Csa7G046140 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G046140
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR022251 (Protein of unknown function wound-induced)
Location	Chr7 : 2762319 .. 2762555 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGTGAGCAACAACAGTATACGACTAACTTCAATTCTAATTCCTCCATCAAAACTAACTTCTCTATTTATCCTAATCATACTTCTAGTAAGTCTTCTTCTTCTTCTTCCAAGTATCCCACCAAATTTTCTCACAATGGCTCCGTCTCTCAGGGTGAGAAAGACAAGATAAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATGTATTTGAGTTGTTGGGGCCCTAATTCATGA

mRNA sequence

ATGGCTGGTGAGCAACAACAGTATACGACTAACTTCAATTCTAATTCCTCCATCAAAACTAACTTCTCTATTTATCCTAATCATACTTCTAGTAAGTCTTCTTCTTCTTCTTCCAAGTATCCCACCAAATTTTCTCACAATGGCTCCGTCTCTCAGGGTGAGAAAGACAAGATAAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATGTATTTGAGTTGTTGGGGCCCTAATTCATGA

Coding sequence (CDS)

ATGGCTGGTGAGCAACAACAGTATACGACTAACTTCAATTCTAATTCCTCCATCAAAACTAACTTCTCTATTTATCCTAATCATACTTCTAGTAAGTCTTCTTCTTCTTCTTCCAAGTATCCCACCAAATTTTCTCACAATGGCTCCGTCTCTCAGGGTGAGAAAGACAAGATAAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATGTATTTGAGTTGTTGGGGCCCTAATTCATGA

Protein sequence

MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVSQGEKDKIKKAEESLRTVMYLSCWGPNS*

Homology

[Close]

BLAST of Csa7G046140 vs. TrEMBL
Match: A0A0A0K1Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046140 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.5e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVSQGEKDKIKK 60
          MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVSQGEKDKIKK
Sbjct: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVSQGEKDKIKK 60

Query: 61 AEESLRTVMYLSCWGPNS 79
          AEESLRTVMYLSCWGPNS
Sbjct: 61 AEESLRTVMYLSCWGPNS 78

[Close]

BLAST of Csa7G046140 vs. TrEMBL
Match: M5WPM4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014141mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-07
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 29 TSSKSSSSSSKYPTKFSHN---GSVSQGEKDKIKKAEESLRTVMYLSCWGPN 78
          +SS SSSSSSK   +FS +   G+      DK+K+AEESLRTVMYLSCWGPN
Sbjct: 33 SSSSSSSSSSKQAWRFSSSVDSGAFKAANSDKVKQAEESLRTVMYLSCWGPN 84

[Close]

BLAST of Csa7G046140 vs. TrEMBL
Match: A0A0D2UL79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G023600 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-07
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 16 SSIKTNFSIYPNHTSSKSSSSSSKYPTKFSH---NGSV--SQGEKDKIKKAEESLRTVMY 75
          S ++TN     + +SS SSSSSSK   +FS+   +G+V  +    +++K+AEESLRTVM+
Sbjct: 26 SKLETNLRSLKDSSSSSSSSSSSKQARRFSNTVDSGTVKAAAATNERLKQAEESLRTVMF 85

Query: 76 LSCWGPNS 79
          LSCWGPNS
Sbjct: 86 LSCWGPNS 93

[Close]

BLAST of Csa7G046140 vs. TrEMBL
Match: W9QP69_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002783 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 34/69 (49.28%), Postives = 45/69 (65.22%), Query Frame = 1


Query: 15 NSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSH------NGSVSQGEKDKIKKAEESLRTV 74
          +SS  +  S   + +SS SSSSSSK  + FS       N + +  + D++K+AEESLRTV
Sbjct: 24 DSSASSTSSTSSSSSSSSSSSSSSKKASLFSGALDQSININGTAAKNDRLKQAEESLRTV 83

Query: 75 MYLSCWGPN 78
          MYLSCWGPN
Sbjct: 84 MYLSCWGPN 92

[Close]

BLAST of Csa7G046140 vs. TrEMBL
Match: A0A067JLI7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21346 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-06
Identity = 32/62 (51.61%), Postives = 41/62 (66.13%), Query Frame = 1


Query: 20 TNFSIYPNHTSSKSSSSSSKYPTKFS----HNGSVSQGEKDKIKKAEESLRTVMYLSCWG 78
          T+ +I     S+ +SSSSSK    FS     +G+    + DK+K+AEESLRTVMYLSCWG
Sbjct: 29 TDSTIKSLRDSTCASSSSSKQARLFSGAVSDSGAFKANKNDKLKQAEESLRTVMYLSCWG 88

[Close]

BLAST of Csa7G046140 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.0e-08
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1


Query: 32 KSSSSSSKYPTKFSHNGSVSQGEKDKIKKAEESLRTVMYLSCWGPN 78
          +S S   ++ +        S GE +K KKAEESLRTVMYLSCWGPN
Sbjct: 45 RSVSQGKRFSSSSVSAAVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]

BLAST of Csa7G046140 vs. NCBI nr
Match: gi|700188342|gb|KGN43575.1| (hypothetical protein Csa_7G046140 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.0e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1


Query: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVSQGEKDKIKK 60
          MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVSQGEKDKIKK
Sbjct: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVSQGEKDKIKK 60

Query: 61 AEESLRTVMYLSCWGPNS 79
          AEESLRTVMYLSCWGPNS
Sbjct: 61 AEESLRTVMYLSCWGPNS 78

[Close]

BLAST of Csa7G046140 vs. NCBI nr
Match: gi|659110689|ref|XP_008455360.1| (PREDICTED: uncharacterized protein LOC103495546 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 2.2e-32
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 1


Query: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVSQGEKDKIKK 60
          MAGEQQQYT NFNSNSSIKTNFS+YPNHTSSK SS SSKYPTKFSHNGS+SQGEKDKIKK
Sbjct: 1  MAGEQQQYT-NFNSNSSIKTNFSVYPNHTSSKCSS-SSKYPTKFSHNGSISQGEKDKIKK 60

Query: 61 AEESLRTVMYLSCWGPNS 79
          AEESLRTVMYLSCWGPNS
Sbjct: 61 AEESLRTVMYLSCWGPNS 76

[Close]

BLAST of Csa7G046140 vs. NCBI nr
Match: gi|823243777|ref|XP_012454544.1| (PREDICTED: uncharacterized protein LOC105776442 [Gossypium raimondii])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 34/68 (50.00%), Postives = 48/68 (70.59%), Query Frame = 1


Query: 16 SSIKTNFSIYPNHTSSKSSSSSSKYPTKFSH---NGSV--SQGEKDKIKKAEESLRTVMY 75
          S ++TN     + +SS SSSSSSK   +FS+   +G+V  +    +++K+AEESLRTVM+
Sbjct: 26 SKLETNLRSLKDSSSSSSSSSSSKQARRFSNTVDSGTVKAAAATNERLKQAEESLRTVMF 85

Query: 76 LSCWGPNS 79
          LSCWGPNS
Sbjct: 86 LSCWGPNS 93

[Close]

BLAST of Csa7G046140 vs. NCBI nr
Match: gi|595904701|ref|XP_007213997.1| (hypothetical protein PRUPE_ppa014141mg [Prunus persica])

HSP 1 Score: 63.2 bits (152), Expect = 2.4e-07
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 1


Query: 29 TSSKSSSSSSKYPTKFSHN---GSVSQGEKDKIKKAEESLRTVMYLSCWGPN 78
          +SS SSSSSSK   +FS +   G+      DK+K+AEESLRTVMYLSCWGPN
Sbjct: 33 SSSSSSSSSSKQAWRFSSSVDSGAFKAANSDKVKQAEESLRTVMYLSCWGPN 84

[Close]

BLAST of Csa7G046140 vs. NCBI nr
Match: gi|645236841|ref|XP_008224930.1| (PREDICTED: uncharacterized protein LOC103324627 [Prunus mume])

HSP 1 Score: 61.2 bits (147), Expect = 9.2e-07
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 29 TSSKSSSSSSKYPTKFSHN---GSVSQGEKDKIKKAEESLRTVMYLSCWGPN 78
          +SS S SSSS    +FS +   G+   G  DK+K+AEESLRTVMYLSCWGPN
Sbjct: 31 SSSSSCSSSSSSSWRFSSSVDSGAFKAGNSDKVKQAEESLRTVMYLSCWGPN 82

The following BLAST results are available for this feature:

BLAST of Csa7G046140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1Q2_CUCSA	3.5e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046140 PE=4 SV=1	[more]
M5WPM4_PRUPE	1.7e-07	61.54	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014141mg PE=4 SV=1	[more]
A0A0D2UL79_GOSRA	1.7e-07	50.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G023600 PE=4 SV=1	[more]
W9QP69_9ROSA	1.4e-06	49.28	Uncharacterized protein OS=Morus notabilis GN=L484_002783 PE=4 SV=1	[more]
A0A067JLI7_JATCU	4.1e-06	51.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21346 PE=4 SV=1	[more]

BLAST of Csa7G046140 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10270.1	3.0e-08	54.35	Wound-responsive family protein	[more]

BLAST of Csa7G046140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188342\|gb\|KGN43575.1\|	5.0e-37	100.00	hypothetical protein Csa_7G046140 [Cucumis sativus]	[more]
gi\|659110689\|ref\|XP_008455360.1\|	2.2e-32	93.59	PREDICTED: uncharacterized protein LOC103495546 [Cucumis melo]	[more]
gi\|823243777\|ref\|XP_012454544.1\|	2.4e-07	50.00	PREDICTED: uncharacterized protein LOC105776442 [Gossypium raimondii]	[more]
gi\|595904701\|ref\|XP_007213997.1\|	2.4e-07	61.54	hypothetical protein PRUPE_ppa014141mg [Prunus persica]	[more]
gi\|645236841\|ref\|XP_008224930.1\|	9.2e-07	59.62	PREDICTED: uncharacterized protein LOC103324627 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G046140.1	Csa7G046140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 27..76 score: 1.4
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 32..77 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G046140	Cla007721	Watermelon (97103) v1	cuwmB596
Csa7G046140	MELO3C018771	Melon (DHL92) v3.5.1	cumeB530
Csa7G046140	ClCG02G001350	Watermelon (Charleston Gray)	cuwcgB546
Csa7G046140	Lsi11G015100	Bottle gourd (USVL1VR-Ls)	culsiB494
Csa7G046140	MELO3C018771.2	Melon (DHL92) v3.6.1	cumedB509
Csa7G046140	Cla97C02G027810	Watermelon (97103) v2	cuwmbB529
Csa7G046140	Bhi05G001569	Wax gourd	cuwgoB662
Csa7G046140	CSPI07G04240	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G046140	Wax gourd	cuwgoB683
Csa7G046140	Wax gourd	cuwgoB687
Csa7G046140	Cucumber (Chinese Long) v2	cucuB044
Csa7G046140	Cucumber (Gy14) v1	cgycuB028
Csa7G046140	Cucumber (Gy14) v1	cgycuB173
Csa7G046140	Cucumber (Gy14) v1	cgycuB215
Csa7G046140	Cucurbita maxima (Rimu)	cmacuB147
Csa7G046140	Cucurbita maxima (Rimu)	cmacuB231
Csa7G046140	Cucurbita maxima (Rimu)	cmacuB426
Csa7G046140	Cucurbita maxima (Rimu)	cmacuB527
Csa7G046140	Cucurbita maxima (Rimu)	cmacuB643
Csa7G046140	Cucurbita moschata (Rifu)	cmocuB132
Csa7G046140	Cucurbita moschata (Rifu)	cmocuB218
Csa7G046140	Cucurbita moschata (Rifu)	cmocuB415
Csa7G046140	Cucurbita moschata (Rifu)	cmocuB518
Csa7G046140	Cucurbita moschata (Rifu)	cmocuB632
Csa7G046140	Melon (DHL92) v3.5.1	cumeB518
Csa7G046140	Melon (DHL92) v3.5.1	cumeB564
Csa7G046140	Watermelon (Charleston Gray)	cuwcgB537
Csa7G046140	Watermelon (Charleston Gray)	cuwcgB553
Csa7G046140	Watermelon (97103) v1	cuwmB581
Csa7G046140	Watermelon (97103) v1	cuwmB593
Csa7G046140	Cucurbita pepo (Zucchini)	cpecuB257
Csa7G046140	Cucurbita pepo (Zucchini)	cpecuB526
Csa7G046140	Cucurbita pepo (Zucchini)	cpecuB690
Csa7G046140	Cucurbita pepo (Zucchini)	cpecuB765
Csa7G046140	Bottle gourd (USVL1VR-Ls)	culsiB490
Csa7G046140	Bottle gourd (USVL1VR-Ls)	culsiB502
Csa7G046140	Bottle gourd (USVL1VR-Ls)	culsiB507
Csa7G046140	Cucumber (Gy14) v2	cgybcuB289
Csa7G046140	Cucumber (Gy14) v2	cgybcuB324
Csa7G046140	Melon (DHL92) v3.6.1	cumedB498
Csa7G046140	Melon (DHL92) v3.6.1	cumedB541
Csa7G046140	Silver-seed gourd	carcuB0032
Csa7G046140	Silver-seed gourd	carcuB0170
Csa7G046140	Silver-seed gourd	carcuB0664
Csa7G046140	Silver-seed gourd	carcuB0739
Csa7G046140	Silver-seed gourd	carcuB0891
Csa7G046140	Silver-seed gourd	carcuB0965
Csa7G046140	Watermelon (97103) v2	cuwmbB514
Csa7G046140	Watermelon (97103) v2	cuwmbB536