ClCG02G001350 (gene) Watermelon (Charleston Gray)

NameClCG02G001350
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 1507515 .. 1508335 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCAGAAACTGGTGAGCAACAATGCACTAACTACAATTCCAATTCCTCCATGAAAACTTTCTCTATTTACCCTAATTGTACTTCTACCAAGTTTTCTTCTTCTTCTTCTTCTTCCTCAAAACACCCCACCAAATTTCCCCATAATGGCTCCATCTCCGGCGCCAAACACGGCGGTGATAGGGACAAGTTCAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATGTATTTGAGCTGTTGGGGTCCTAATTCATGATGACGTACGTTTTTTTAACCATTTATTTCCAGAAATTATTCGAGGAGTTGACGAAATAAATTTTAAAGATGGTATTTCCAACCTATATTTTGAAAGGTGGCTATGCAACCAACTAATTTTGAACATATATCAACCGTTATCGTCAGTCGACAATCATATTGTAATGTTCTTATTAAATTTTCATTTGCCGTTGGTGTGCGTTTTCCTACAAAAATTGTAGCATTGTAGATGGAAGGAATTAGGCTTTGTTGCTATAAATTAGTGGTGGATCGATCGGAGAATGGTGCATTGGCAGTTTAGTTTGACACTCCACGAGGCGAAGTTTTTGTAGTCATTAATTTGATTATTTTGTGCCTCGTTTTTAATTTGATTAACTTGCATTTTGTAATGCATTTATATTTTGGTAATCAACTTTTATGTTTGTCTTGTTTTAAGTTTTTAACATTAGAAATTTATTTAAGTTGGTAAGGAAAGTAGCATGTTTCTATGTATATTAATTTAAGGCAGTCGATTTTGAACTAAAATTTTTATTTTGTAGAAAATTAGATCTTGAATTTGAATAA

mRNA sequence

ATGGGTGCAGAAACTGGTGAGCAACAATGCACTAACTACAATTCCAATTCCTCCATGAAAACTTTCTCTATTTACCCTAATTGTACTTCTACCAAGTTTTCTTCTTCTTCTTCTTCTTCCTCAAAACACCCCACCAAATTTCCCCATAATGGCTCCATCTCCGGCGCCAAACACGGCGGTGATAGGGACAAGTTCAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATAAAATTAGATCTTGAATTTGAATAA

Coding sequence (CDS)

ATGGGTGCAGAAACTGGTGAGCAACAATGCACTAACTACAATTCCAATTCCTCCATGAAAACTTTCTCTATTTACCCTAATTGTACTTCTACCAAGTTTTCTTCTTCTTCTTCTTCTTCCTCAAAACACCCCACCAAATTTCCCCATAATGGCTCCATCTCCGGCGCCAAACACGGCGGTGATAGGGACAAGTTCAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATAAAATTAGATCTTGAATTTGAATAA

Protein sequence

MGAETGEQQCTNYNSNSSMKTFSIYPNCTSTKFSSSSSSSSKHPTKFPHNGSISGAKHGGDRDKFKKAEESLRTVIKLDLEFE
BLAST of ClCG02G001350 vs. TrEMBL
Match: A0A0A0K1Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046140 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-14
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1

Query: 6  GEQQ--CTNYNSNSSMKT-FSIYPNCTSTKFSSSSSSSSKHPTKFPHNGSISGAKHGGDR 65
          GEQQ   TN+NSNSS+KT FSIYPN TS+K   SSSSSSK+PTKF HNGS+S     G++
Sbjct: 3  GEQQQYTTNFNSNSSIKTNFSIYPNHTSSK---SSSSSSKYPTKFSHNGSVS----QGEK 62

Query: 66 DKFKKAEESLRTVIKL 79
          DK KKAEESLRTV+ L
Sbjct: 63 DKIKKAEESLRTVMYL 71

BLAST of ClCG02G001350 vs. NCBI nr
Match: gi|700188342|gb|KGN43575.1| (hypothetical protein Csa_7G046140 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-14
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1

Query: 6  GEQQ--CTNYNSNSSMKT-FSIYPNCTSTKFSSSSSSSSKHPTKFPHNGSISGAKHGGDR 65
          GEQQ   TN+NSNSS+KT FSIYPN TS+K   SSSSSSK+PTKF HNGS+S     G++
Sbjct: 3  GEQQQYTTNFNSNSSIKTNFSIYPNHTSSK---SSSSSSKYPTKFSHNGSVS----QGEK 62

Query: 66 DKFKKAEESLRTVIKL 79
          DK KKAEESLRTV+ L
Sbjct: 63 DKIKKAEESLRTVMYL 71

BLAST of ClCG02G001350 vs. NCBI nr
Match: gi|659110689|ref|XP_008455360.1| (PREDICTED: uncharacterized protein LOC103495546 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1

Query: 7  EQQCTNYNSNSSMKT-FSIYPNCTSTKFSSSSSSSSKHPTKFPHNGSISGAKHGGDRDKF 66
          +QQ TN+NSNSS+KT FS+YPN TS+K     SSSSK+PTKF HNGSIS     G++DK 
Sbjct: 5  QQQYTNFNSNSSIKTNFSVYPNHTSSK----CSSSSKYPTKFSHNGSISQ----GEKDKI 64

Query: 67 KKAEESLRTVIKL 79
          KKAEESLRTV+ L
Sbjct: 65 KKAEESLRTVMYL 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K1Q2_CUCSA1.5e-1468.42Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046140 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700188342|gb|KGN43575.1|2.1e-1468.42hypothetical protein Csa_7G046140 [Cucumis sativus][more]
gi|659110689|ref|XP_008455360.1|1.4e-1365.75PREDICTED: uncharacterized protein LOC103495546 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G001350.1ClCG02G001350.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G001350Bottle gourd (USVL1VR-Ls)lsiwcgB060
ClCG02G001350Bottle gourd (USVL1VR-Ls)lsiwcgB128
ClCG02G001350Cucumber (Gy14) v2cgybwcgB506
ClCG02G001350Melon (DHL92) v3.6.1medwcgB137
ClCG02G001350Melon (DHL92) v3.6.1medwcgB190
ClCG02G001350Melon (DHL92) v3.6.1medwcgB514
ClCG02G001350Silver-seed gourdcarwcgB0032
ClCG02G001350Silver-seed gourdcarwcgB0329
ClCG02G001350Silver-seed gourdcarwcgB0624
ClCG02G001350Silver-seed gourdcarwcgB0696
ClCG02G001350Silver-seed gourdcarwcgB0851
ClCG02G001350Cucumber (Chinese Long) v3cucwcgB036
ClCG02G001350Cucumber (Chinese Long) v3cucwcgB476
ClCG02G001350Watermelon (97103) v2wcgwmbB155
ClCG02G001350Wax gourdwcgwgoB295
ClCG02G001350Wax gourdwcgwgoB310
ClCG02G001350Watermelon (Charleston Gray)wcgwcgB088
ClCG02G001350Watermelon (Charleston Gray)wcgwcgB123
ClCG02G001350Cucumber (Gy14) v1cgywcgB023
ClCG02G001350Cucumber (Gy14) v1cgywcgB248
ClCG02G001350Cucurbita maxima (Rimu)cmawcgB102
ClCG02G001350Cucurbita maxima (Rimu)cmawcgB190
ClCG02G001350Cucurbita maxima (Rimu)cmawcgB460
ClCG02G001350Cucurbita maxima (Rimu)cmawcgB532
ClCG02G001350Cucurbita maxima (Rimu)cmawcgB580
ClCG02G001350Cucurbita moschata (Rifu)cmowcgB094
ClCG02G001350Cucurbita moschata (Rifu)cmowcgB181
ClCG02G001350Cucurbita moschata (Rifu)cmowcgB459
ClCG02G001350Cucurbita moschata (Rifu)cmowcgB484
ClCG02G001350Cucurbita moschata (Rifu)cmowcgB529
ClCG02G001350Cucurbita moschata (Rifu)cmowcgB576
ClCG02G001350Wild cucumber (PI 183967)cpiwcgB036
ClCG02G001350Wild cucumber (PI 183967)cpiwcgB478
ClCG02G001350Wild cucumber (PI 183967)cpiwcgB574
ClCG02G001350Cucumber (Chinese Long) v2cuwcgB032
ClCG02G001350Cucumber (Chinese Long) v2cuwcgB456
ClCG02G001350Melon (DHL92) v3.5.1mewcgB146
ClCG02G001350Melon (DHL92) v3.5.1mewcgB519
ClCG02G001350Watermelon (97103) v1wcgwmB183
ClCG02G001350Watermelon (97103) v1wcgwmB194
ClCG02G001350Cucurbita pepo (Zucchini)cpewcgB233
ClCG02G001350Cucurbita pepo (Zucchini)cpewcgB596
ClCG02G001350Cucurbita pepo (Zucchini)cpewcgB665