ClCG02G001350.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G001350.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 1507515 .. 1508335 (-)
Sequence length	252

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGCAGAAACTGGTGAGCAACAATGCACTAACTACAATTCCAATTCCTCCATGAAAACTTTCTCTATTTACCCTAATTGTACTTCTACCAAGTTTTCTTCTTCTTCTTCTTCTTCCTCAAAACACCCCACCAAATTTCCCCATAATGGCTCCATCTCCGGCGCCAAACACGGCGGTGATAGGGACAAGTTCAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATGTATTTGAGCTGTTGGGGTCCTAATTCATGATGACGTACGTTTTTTTAACCATTTATTTCCAGAAATTATTCGAGGAGTTGACGAAATAAATTTTAAAGATGGTATTTCCAACCTATATTTTGAAAGGTGGCTATGCAACCAACTAATTTTGAACATATATCAACCGTTATCGTCAGTCGACAATCATATTGTAATGTTCTTATTAAATTTTCATTTGCCGTTGGTGTGCGTTTTCCTACAAAAATTGTAGCATTGTAGATGGAAGGAATTAGGCTTTGTTGCTATAAATTAGTGGTGGATCGATCGGAGAATGGTGCATTGGCAGTTTAGTTTGACACTCCACGAGGCGAAGTTTTTGTAGTCATTAATTTGATTATTTTGTGCCTCGTTTTTAATTTGATTAACTTGCATTTTGTAATGCATTTATATTTTGGTAATCAACTTTTATGTTTGTCTTGTTTTAAGTTTTTAACATTAGAAATTTATTTAAGTTGGTAAGGAAAGTAGCATGTTTCTATGTATATTAATTTAAGGCAGTCGATTTTGAACTAAAATTTTTATTTTGTAGAAAATTAGATCTTGAATTTGAATAA

mRNA sequence

ATGGGTGCAGAAACTGGTGAGCAACAATGCACTAACTACAATTCCAATTCCTCCATGAAAACTTTCTCTATTTACCCTAATTGTACTTCTACCAAGTTTTCTTCTTCTTCTTCTTCTTCCTCAAAACACCCCACCAAATTTCCCCATAATGGCTCCATCTCCGGCGCCAAACACGGCGGTGATAGGGACAAGTTCAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATAAAATTAGATCTTGAATTTGAATAA

Coding sequence (CDS)

ATGGGTGCAGAAACTGGTGAGCAACAATGCACTAACTACAATTCCAATTCCTCCATGAAAACTTTCTCTATTTACCCTAATTGTACTTCTACCAAGTTTTCTTCTTCTTCTTCTTCTTCCTCAAAACACCCCACCAAATTTCCCCATAATGGCTCCATCTCCGGCGCCAAACACGGCGGTGATAGGGACAAGTTCAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATAAAATTAGATCTTGAATTTGAATAA

Protein sequence

MGAETGEQQCTNYNSNSSMKTFSIYPNCTSTKFSSSSSSSSKHPTKFPHNGSISGAKHGGDRDKFKKAEESLRTVIKLDLEFE

Homology

[Close]

BLAST of ClCG02G001350.1 vs. TrEMBL
Match: A0A0A0K1Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046140 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-14
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 6  GEQQ--CTNYNSNSSMKT-FSIYPNCTSTKFSSSSSSSSKHPTKFPHNGSISGAKHGGDR 65
          GEQQ   TN+NSNSS+KT FSIYPN TS+K   SSSSSSK+PTKF HNGS+S     G++
Sbjct: 3  GEQQQYTTNFNSNSSIKTNFSIYPNHTSSK---SSSSSSKYPTKFSHNGSVS----QGEK 62

Query: 66 DKFKKAEESLRTVIKL 79
          DK KKAEESLRTV+ L
Sbjct: 63 DKIKKAEESLRTVMYL 71

[Close]

BLAST of ClCG02G001350.1 vs. NCBI nr
Match: gi|700188342|gb|KGN43575.1| (hypothetical protein Csa_7G046140 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-14
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 6  GEQQ--CTNYNSNSSMKT-FSIYPNCTSTKFSSSSSSSSKHPTKFPHNGSISGAKHGGDR 65
          GEQQ   TN+NSNSS+KT FSIYPN TS+K   SSSSSSK+PTKF HNGS+S     G++
Sbjct: 3  GEQQQYTTNFNSNSSIKTNFSIYPNHTSSK---SSSSSSKYPTKFSHNGSVS----QGEK 62

Query: 66 DKFKKAEESLRTVIKL 79
          DK KKAEESLRTV+ L
Sbjct: 63 DKIKKAEESLRTVMYL 71

[Close]

BLAST of ClCG02G001350.1 vs. NCBI nr
Match: gi|659110689|ref|XP_008455360.1| (PREDICTED: uncharacterized protein LOC103495546 [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 7  EQQCTNYNSNSSMKT-FSIYPNCTSTKFSSSSSSSSKHPTKFPHNGSISGAKHGGDRDKF 66
          +QQ TN+NSNSS+KT FS+YPN TS+K     SSSSK+PTKF HNGSIS     G++DK 
Sbjct: 5  QQQYTNFNSNSSIKTNFSVYPNHTSSK----CSSSSKYPTKFSHNGSISQ----GEKDKI 64

Query: 67 KKAEESLRTVIKL 79
          KKAEESLRTV+ L
Sbjct: 65 KKAEESLRTVMYL 69

The following BLAST results are available for this feature:

BLAST of ClCG02G001350.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1Q2_CUCSA	1.5e-14	68.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046140 PE=4 SV=1	[more]

BLAST of ClCG02G001350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188342\|gb\|KGN43575.1\|	2.1e-14	68.42	hypothetical protein Csa_7G046140 [Cucumis sativus]	[more]
gi\|659110689\|ref\|XP_008455360.1\|	1.4e-13	65.75	PREDICTED: uncharacterized protein LOC103495546 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G001350	ClCG02G001350	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G001350.1	ClCG02G001350.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G001350.1.cds2	ClCG02G001350.1.cds2	CDS
ClCG02G001350.1.cds1	ClCG02G001350.1.cds1	CDS