CSPI07G04240 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI07G04240
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionWound-responsive family protein
LocationChr7 : 3248420 .. 3249056 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTTGGAGAGCCCAAATTTGCCACTTCTAAAATCCTCTCTCTCTAAACAAATTGGTGACAATTTTTCTTCATGGCTGGTGAGCAACAACAGTATACGACTAACTTCAATTCTAATTCCTCCATCAAAACTAACTTCTCTATTTATCCTAATCATACTTCTAGTAAGTATTCTTCTTCTTCTTCTTCCAAGTATCCCACCAAATTTTCTCACAATGGCTCCGTCTCTCAGGGTGAGAAAGACAAGATAAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATGTATTTGAGTTGTTGGGGCCCTAATTCATGATGTGAAATTTTCATTCAAGAAATTAATCAAAGACTTGAAACATCATTGATGCAAGAAAAAATTTAAGACGGTATTTCAAACCCTACATCAGAGCGCACATGGTTATGAAACGAATCATATGTGTAATCAACTGTTATCCACGTCGGCGAAACATCCATATTGTGACAGGTGTTATTCATCTTTCACTTCTGATTTTTTTTAAGACTTTGTTAGTATAACTACTTAGTGGTGGATCGAAAAGGAGATGGTACATTAGAAGCTATCGAGAACCGAAAATGATGATGATTTAATTTTGAGCGTCTAACTTTGATACTCTACGAGGCA

mRNA sequence

ATGGCTGGTGAGCAACAACAGTATACGACTAACTTCAATTCTAATTCCTCCATCAAAACTAACTTCTCTATTTATCCTAATCATACTTCTAGTAAGTATTCTTCTTCTTCTTCTTCCAAGTATCCCACCAAATTTTCTCACAATGGCTCCGTCTCTCAGGGTGAGAAAGACAAGATAAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATGTATTTGAGTTGTTGGGGCCCTAATTCATGA

Coding sequence (CDS)

ATGGCTGGTGAGCAACAACAGTATACGACTAACTTCAATTCTAATTCCTCCATCAAAACTAACTTCTCTATTTATCCTAATCATACTTCTAGTAAGTATTCTTCTTCTTCTTCTTCCAAGTATCCCACCAAATTTTCTCACAATGGCTCCGTCTCTCAGGGTGAGAAAGACAAGATAAAAAAGGCTGAAGAGTCTCTTCGAACCGTCATGTATTTGAGTTGTTGGGGCCCTAATTCATGA
Homology
[Close]
BLAST of CSPI07G04240 vs. TrEMBL
Match: A0A0A0K1Q2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046140 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.1e-33
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1 

Query: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKYSSSSSSKYPTKFSHNGSVSQGEKDKIK 60
          MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSK SSSSSSKYPTKFSHNGSVSQGEKDKIK
Sbjct: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSK-SSSSSSKYPTKFSHNGSVSQGEKDKIK 60

Query: 61 KAEESLRTVMYLSCWGPNS 80
          KAEESLRTVMYLSCWGPNS
Sbjct: 61 KAEESLRTVMYLSCWGPNS 78

[Close]
BLAST of CSPI07G04240 vs. TrEMBL
Match: M5WPM4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014141mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.5e-06
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1 

Query: 29 TSSKYSSSSSSKYPTKFSHN---GSVSQGEKDKIKKAEESLRTVMYLSCWGPN 79
          +SS  SSSSSSK   +FS +   G+      DK+K+AEESLRTVMYLSCWGPN
Sbjct: 32 SSSSSSSSSSSKQAWRFSSSVDSGAFKAANSDKVKQAEESLRTVMYLSCWGPN 84

[Close]
BLAST of CSPI07G04240 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 52.8 bits (125), Expect = 1.2e-07
Identity = 29/47 (61.70%), Postives = 32/47 (68.09%), Query Frame = 1 

Query: 32 KYSSSSSSKYPTKFSHNGSVSQGEKDKIKKAEESLRTVMYLSCWGPN 79
          ++SSSS S   T        S GE +K KKAEESLRTVMYLSCWGPN
Sbjct: 52 RFSSSSVSAAVT--------SSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]
BLAST of CSPI07G04240 vs. NCBI nr
Match: gi|700188342|gb|KGN43575.1| (hypothetical protein Csa_7G046140 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 4.4e-33
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1 

Query: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKYSSSSSSKYPTKFSHNGSVSQGEKDKIK 60
          MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSK SSSSSSKYPTKFSHNGSVSQGEKDKIK
Sbjct: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSK-SSSSSSKYPTKFSHNGSVSQGEKDKIK 60

Query: 61 KAEESLRTVMYLSCWGPNS 80
          KAEESLRTVMYLSCWGPNS
Sbjct: 61 KAEESLRTVMYLSCWGPNS 78

[Close]
BLAST of CSPI07G04240 vs. NCBI nr
Match: gi|659110689|ref|XP_008455360.1| (PREDICTED: uncharacterized protein LOC103495546 [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 6.0e-30
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 1 

Query: 1  MAGEQQQYTTNFNSNSSIKTNFSIYPNHTSSKYSSSSSSKYPTKFSHNGSVSQGEKDKIK 60
          MAGEQQQYT NFNSNSSIKTNFS+YPNHTSSK   SSSSKYPTKFSHNGS+SQGEKDKIK
Sbjct: 1  MAGEQQQYT-NFNSNSSIKTNFSVYPNHTSSK--CSSSSKYPTKFSHNGSISQGEKDKIK 60

Query: 61 KAEESLRTVMYLSCWGPNS 80
          KAEESLRTVMYLSCWGPNS
Sbjct: 61 KAEESLRTVMYLSCWGPNS 76

[Close]
BLAST of CSPI07G04240 vs. NCBI nr
Match: gi|595904701|ref|XP_007213997.1| (hypothetical protein PRUPE_ppa014141mg [Prunus persica])

HSP 1 Score: 58.2 bits (139), Expect = 7.9e-06
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1 

Query: 29 TSSKYSSSSSSKYPTKFSHN---GSVSQGEKDKIKKAEESLRTVMYLSCWGPN 79
          +SS  SSSSSSK   +FS +   G+      DK+K+AEESLRTVMYLSCWGPN
Sbjct: 32 SSSSSSSSSSSKQAWRFSSSVDSGAFKAANSDKVKQAEESLRTVMYLSCWGPN 84

The following BLAST results are available for this feature:
BLAST of CSPI07G04240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI07G04240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1Q2_CUCSA3.1e-3398.73Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046140 PE=4 SV=1[more]
M5WPM4_PRUPE5.5e-0660.38Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014141mg PE=4 SV=1[more]
BLAST of CSPI07G04240 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10270.11.2e-0761.70 Wound-responsive family protein[more]
BLAST of CSPI07G04240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188342|gb|KGN43575.1|4.4e-3398.73hypothetical protein Csa_7G046140 [Cucumis sativus][more]
gi|659110689|ref|XP_008455360.1|6.0e-3092.41PREDICTED: uncharacterized protein LOC103495546 [Cucumis melo][more]
gi|595904701|ref|XP_007213997.1|7.9e-0660.38hypothetical protein PRUPE_ppa014141mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G04240.1CSPI07G04240.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 27..77
score: 2.4
NoneNo IPR availablePANTHERPTHR33090FAMILY NOT NAMEDcoord: 55..78
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI07G04240Cla007721Watermelon (97103) v1cpiwmB614
CSPI07G04240Csa7G046140Cucumber (Chinese Long) v2cpicuB354
CSPI07G04240MELO3C018771Melon (DHL92) v3.5.1cpimeB538
CSPI07G04240Lsi11G015100Bottle gourd (USVL1VR-Ls)cpilsiB505
CSPI07G04240MELO3C018771.2Melon (DHL92) v3.6.1cpimedB523
CSPI07G04240CsaV3_7G004080Cucumber (Chinese Long) v3cpicucB415
CSPI07G04240Cla97C02G027810Watermelon (97103) v2cpiwmbB553
CSPI07G04240Bhi05G001569Wax gourdcpiwgoB673
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI07G04240Silver-seed gourdcarcpiB0034
CSPI07G04240Silver-seed gourdcarcpiB0176
CSPI07G04240Silver-seed gourdcarcpiB0673
CSPI07G04240Silver-seed gourdcarcpiB0755
CSPI07G04240Silver-seed gourdcarcpiB0911
CSPI07G04240Cucumber (Chinese Long) v3cpicucB380
CSPI07G04240Cucumber (Chinese Long) v3cpicucB409
CSPI07G04240Watermelon (97103) v2cpiwmbB562
CSPI07G04240Watermelon (97103) v2cpiwmbB539
CSPI07G04240Wax gourdcpiwgoB694
CSPI07G04240Wax gourdcpiwgoB699
CSPI07G04240Wild cucumber (PI 183967)cpicpiB050
CSPI07G04240Wild cucumber (PI 183967)cpicpiB188
CSPI07G04240Cucumber (Gy14) v1cgycpiB029
CSPI07G04240Cucumber (Gy14) v1cgycpiB176
CSPI07G04240Cucumber (Gy14) v1cgycpiB220
CSPI07G04240Cucurbita maxima (Rimu)cmacpiB144
CSPI07G04240Cucurbita maxima (Rimu)cmacpiB233
CSPI07G04240Cucurbita maxima (Rimu)cmacpiB533
CSPI07G04240Cucurbita maxima (Rimu)cmacpiB650
CSPI07G04240Cucurbita moschata (Rifu)cmocpiB131
CSPI07G04240Cucurbita moschata (Rifu)cmocpiB220
CSPI07G04240Cucurbita moschata (Rifu)cmocpiB419
CSPI07G04240Cucurbita moschata (Rifu)cmocpiB524
CSPI07G04240Cucurbita moschata (Rifu)cmocpiB568
CSPI07G04240Cucurbita moschata (Rifu)cmocpiB643
CSPI07G04240Melon (DHL92) v3.5.1cpimeB575
CSPI07G04240Watermelon (Charleston Gray)cpiwcgB566
CSPI07G04240Watermelon (Charleston Gray)cpiwcgB574
CSPI07G04240Watermelon (Charleston Gray)cpiwcgB583
CSPI07G04240Watermelon (97103) v1cpiwmB600
CSPI07G04240Watermelon (97103) v1cpiwmB612
CSPI07G04240Cucurbita pepo (Zucchini)cpecpiB257
CSPI07G04240Cucurbita pepo (Zucchini)cpecpiB301
CSPI07G04240Cucurbita pepo (Zucchini)cpecpiB692
CSPI07G04240Cucurbita pepo (Zucchini)cpecpiB768
CSPI07G04240Bottle gourd (USVL1VR-Ls)cpilsiB500
CSPI07G04240Bottle gourd (USVL1VR-Ls)cpilsiB516
CSPI07G04240Bottle gourd (USVL1VR-Ls)cpilsiB522
CSPI07G04240Melon (DHL92) v3.6.1cpimedB509
CSPI07G04240Melon (DHL92) v3.6.1cpimedB560
CSPI07G04240Cucumber (Gy14) v2cgybcpiB332