Csa6G419510 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G419510
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 19345343 .. 19345692 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCATCAGATACTCAATAACTTTGCATGCAAATCTTCTCATAGCACCACTTTTTTTCTCCTTCAATGGCACTTCGTTTCAACAAAATACTTGCTCCTCCATTGATGGCTGTTCTTTTCATGGCCATGCTTGTCACGGCAGCAACCGACCCCCATGCAACGGCGCTGCTGTGGACAGTGGAGGAGGCTACTGAAAGAATCAGCAGCAGCAGCAATATGGTAATGCGAAAGTTTGGTTATAGCAAAAGGCAAATGGAACATTTAAGAAGACTTTCTTCTTCCTCTACTGAAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCAACCACCTCGTTTGCCTTAG

mRNA sequence

ATGGCACTTCGTTTCAACAAAATACTTGCTCCTCCATTGATGGCTGTTCTTTTCATGGCCATGCTTGTCACGGCAGCAACCGACCCCCATGCAACGGCGCTGCTGTGGACAGTGGAGGAGGCTACTGAAAGAATCAGCAGCAGCAGCAATATGGTAATGCGAAAGTTTGGTTATAGCAAAAGGCAAATGGAACATTTAAGAAGACTTTCTTCTTCCTCTACTGAAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCAACCACCTCGTTTGCCTTAG

Coding sequence (CDS)

ATGGCACTTCGTTTCAACAAAATACTTGCTCCTCCATTGATGGCTGTTCTTTTCATGGCCATGCTTGTCACGGCAGCAACCGACCCCCATGCAACGGCGCTGCTGTGGACAGTGGAGGAGGCTACTGAAAGAATCAGCAGCAGCAGCAATATGGTAATGCGAAAGTTTGGTTATAGCAAAAGGCAAATGGAACATTTAAGAAGACTTTCTTCTTCCTCTACTGAAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCAACCACCTCGTTTGCCTTAG

Protein sequence

MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQMEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP*
Homology
[Close]
BLAST of Csa6G419510 vs. TrEMBL
Match: A0A0A0KGI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419510 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60
          MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK
Sbjct: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60

Query: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 95
          RQMEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP
Sbjct: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 94

[Close]
BLAST of Csa6G419510 vs. NCBI nr
Match: gi|700192750|gb|KGN47954.1| (hypothetical protein Csa_6G419510 [Cucumis sativus])

HSP 1 Score: 189.9 bits (481), Expect = 2.1e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60
          MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK
Sbjct: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60

Query: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 95
          RQMEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP
Sbjct: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 94

The following BLAST results are available for this feature:
BLAST of Csa6G419510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGI4_CUCSA1.4e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419510 PE=4 SV=1[more]
BLAST of Csa6G419510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192750|gb|KGN47954.1|2.1e-45100.00hypothetical protein Csa_6G419510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G419510.1Csa6G419510.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G419510Cla016272Watermelon (97103) v1cuwmB445
Csa6G419510MELO3C014424Melon (DHL92) v3.5.1cumeB491
Csa6G419510ClCG09G011330Watermelon (Charleston Gray)cuwcgB417
Csa6G419510Lsi11G016860Bottle gourd (USVL1VR-Ls)culsiB427
Csa6G419510MELO3C014424.2Melon (DHL92) v3.6.1cumedB471
Csa6G419510Cla97C09G174060Watermelon (97103) v2cuwmbB508
Csa6G419510Bhi05G001830Wax gourdcuwgoB564
Csa6G419510CmaCh19G010380Cucurbita maxima (Rimu)cmacuB519
Csa6G419510CmoCh19G010680Cucurbita moschata (Rifu)cmocuB510
Csa6G419510CmoCh11G020030Cucurbita moschata (Rifu)cmocuB125
Csa6G419510Cp4.1LG04g02720Cucurbita pepo (Zucchini)cpecuB683
Csa6G419510Cp4.1LG15g08450Cucurbita pepo (Zucchini)cpecuB247
Csa6G419510CsGy6G021740Cucumber (Gy14) v2cgybcuB281
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G419510Watermelon (97103) v2cuwmbB438
Csa6G419510Watermelon (97103) v2cuwmbB511
Csa6G419510Wax gourdcuwgoB560
Csa6G419510Wax gourdcuwgoB567
Csa6G419510Wax gourdcuwgoB613
Csa6G419510Cucumber (Gy14) v1cgycuB282
Csa6G419510Cucurbita maxima (Rimu)cmacuB139
Csa6G419510Cucurbita maxima (Rimu)cmacuB140
Csa6G419510Cucurbita maxima (Rimu)cmacuB559
Csa6G419510Cucurbita maxima (Rimu)cmacuB523
Csa6G419510Cucurbita maxima (Rimu)cmacuB638
Csa6G419510Cucurbita moschata (Rifu)cmocuB515
Csa6G419510Cucurbita moschata (Rifu)cmocuB551
Csa6G419510Cucurbita moschata (Rifu)cmocuB629
Csa6G419510Melon (DHL92) v3.5.1cumeB436
Csa6G419510Watermelon (Charleston Gray)cuwcgB448
Csa6G419510Watermelon (97103) v1cuwmB522
Csa6G419510Cucurbita pepo (Zucchini)cpecuB751
Csa6G419510Bottle gourd (USVL1VR-Ls)culsiB422
Csa6G419510Melon (DHL92) v3.6.1cumedB417
Csa6G419510Silver-seed gourdcarcuB0029
Csa6G419510Silver-seed gourdcarcuB0421
Csa6G419510Silver-seed gourdcarcuB0561
Csa6G419510Silver-seed gourdcarcuB0665