Cp4.1LG15g08450 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g08450
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG15 : 8302293 .. 8302574 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCACCCATCATCGTTTCAGCCCAAAATTAGCTCCATTAATGGCCGTTCTTTTCATGGTGATGCTTGTCACCGCGGCGGCCGGCCGCCATGCAGTGCCGCTGAGGACGGAGGCGGCGGCCATTGAAGGCGGTGGCAGCAGCAGCATGATAATGCGTAGGTTGGGTTATACCAAAAGCCAAATGGAGCATTTAAGAAGGCTTTCTTCTTCCACTGCAAGATACATACCTGGAGGGCCTGATTCTCAACATCATTCTCGATCACCTCGTTTGCCGTAG

mRNA sequence

ATGGCAGCCACCCATCATCGTTTCAGCCCAAAATTAGCTCCATTAATGGCCGTTCTTTTCATGGTGATGCTTGTCACCGCGGCGGCCGGCCGCCATGCAGTGCCGCTGAGGACGGAGGCGGCGGCCATTGAAGGCGGTGGCAGCAGCAGCATGATAATGCGTAGGTTGGGTTATACCAAAAGCCAAATGGAGCATTTAAGAAGGCTTTCTTCTTCCACTGCAAGATACATACCTGGAGGGCCTGATTCTCAACATCATTCTCGATCACCTCGTTTGCCGTAG

Coding sequence (CDS)

ATGGCAGCCACCCATCATCGTTTCAGCCCAAAATTAGCTCCATTAATGGCCGTTCTTTTCATGGTGATGCTTGTCACCGCGGCGGCCGGCCGCCATGCAGTGCCGCTGAGGACGGAGGCGGCGGCCATTGAAGGCGGTGGCAGCAGCAGCATGATAATGCGTAGGTTGGGTTATACCAAAAGCCAAATGGAGCATTTAAGAAGGCTTTCTTCTTCCACTGCAAGATACATACCTGGAGGGCCTGATTCTCAACATCATTCTCGATCACCTCGTTTGCCGTAG

Protein sequence

MAATHHRFSPKLAPLMAVLFMVMLVTAAAGRHAVPLRTEAAAIEGGGSSSMIMRRLGYTKSQMEHLRRLSSSTARYIPGGPDSQHHSRSPRLP
Homology
[Close]
BLAST of Cp4.1LG15g08450 vs. TrEMBL
Match: A0A0A0KGI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419510 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.3e-18
Identity = 60/91 (65.93%), Postives = 66/91 (72.53%), Query Frame = 1 

Query: 7  RFSPKLAP-LMAVLFMVMLVTAAAGRHAVPL--RTEAAAIEGGGSSSMIMRRLGYTKSQM 66
          RF+  LAP LMAVLFM MLVTAA   HA  L    E A      SS+M+MR+ GY+K QM
Sbjct: 4  RFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQM 63

Query: 67 EHLRRLSSS-TARYIPGGPDSQHHSRSPRLP 94
          EHLRRLSSS T RYIPGGPDSQHHS+ PRLP
Sbjct: 64 EHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 94

[Close]
BLAST of Cp4.1LG15g08450 vs. NCBI nr
Match: gi|700192750|gb|KGN47954.1| (hypothetical protein Csa_6G419510 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-18
Identity = 60/91 (65.93%), Postives = 66/91 (72.53%), Query Frame = 1 

Query: 7  RFSPKLAP-LMAVLFMVMLVTAAAGRHAVPL--RTEAAAIEGGGSSSMIMRRLGYTKSQM 66
          RF+  LAP LMAVLFM MLVTAA   HA  L    E A      SS+M+MR+ GY+K QM
Sbjct: 4  RFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQM 63

Query: 67 EHLRRLSSS-TARYIPGGPDSQHHSRSPRLP 94
          EHLRRLSSS T RYIPGGPDSQHHS+ PRLP
Sbjct: 64 EHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 94

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g08450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g08450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGI4_CUCSA3.3e-1865.93Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419510 PE=4 SV=1[more]
BLAST of Cp4.1LG15g08450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g08450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192750|gb|KGN47954.1|4.7e-1865.93hypothetical protein Csa_6G419510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g08450.1Cp4.1LG15g08450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g08450CmaCh19G010380Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g08450CmoCh11G020030Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g08450CmoCh19G010680Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g08450Cla016272Watermelon (97103) v1cpewmB241
Cp4.1LG15g08450Csa6G419510Cucumber (Chinese Long) v2cpecuB247
Cp4.1LG15g08450MELO3C014424Melon (DHL92) v3.5.1cpemeB236
Cp4.1LG15g08450ClCG09G011330Watermelon (Charleston Gray)cpewcgB222
Cp4.1LG15g08450Lsi11G016860Bottle gourd (USVL1VR-Ls)cpelsiB201
Cp4.1LG15g08450MELO3C014424.2Melon (DHL92) v3.6.1cpemedB277
Cp4.1LG15g08450CsaV3_6G037620Cucumber (Chinese Long) v3cpecucB0312
Cp4.1LG15g08450CsGy6G021740Cucumber (Gy14) v2cgybcpeB748
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g08450Cp4.1LG04g02720Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g08450Wax gourdcpewgoB0328
Cp4.1LG15g08450Cucurbita pepo (Zucchini)cpecpeB256
Cp4.1LG15g08450Cucurbita pepo (Zucchini)cpecpeB263
Cp4.1LG15g08450Cucurbita pepo (Zucchini)cpecpeB277
Cp4.1LG15g08450Cucumber (Gy14) v1cgycpeB0037
Cp4.1LG15g08450Cucumber (Gy14) v1cgycpeB0504
Cp4.1LG15g08450Cucumber (Gy14) v1cgycpeB0587
Cp4.1LG15g08450Cucurbita maxima (Rimu)cmacpeB115
Cp4.1LG15g08450Cucurbita maxima (Rimu)cmacpeB221
Cp4.1LG15g08450Cucurbita maxima (Rimu)cmacpeB558
Cp4.1LG15g08450Cucurbita maxima (Rimu)cmacpeB873
Cp4.1LG15g08450Cucurbita moschata (Rifu)cmocpeB190
Cp4.1LG15g08450Cucurbita moschata (Rifu)cmocpeB512
Cp4.1LG15g08450Cucurbita moschata (Rifu)cmocpeB567
Cp4.1LG15g08450Cucurbita moschata (Rifu)cmocpeB811
Cp4.1LG15g08450Wild cucumber (PI 183967)cpecpiB249
Cp4.1LG15g08450Wild cucumber (PI 183967)cpecpiB256
Cp4.1LG15g08450Cucumber (Chinese Long) v2cpecuB254
Cp4.1LG15g08450Bottle gourd (USVL1VR-Ls)cpelsiB198
Cp4.1LG15g08450Bottle gourd (USVL1VR-Ls)cpelsiB202
Cp4.1LG15g08450Watermelon (Charleston Gray)cpewcgB230
Cp4.1LG15g08450Watermelon (Charleston Gray)cpewcgB244
Cp4.1LG15g08450Watermelon (97103) v1cpewmB263
Cp4.1LG15g08450Watermelon (97103) v1cpewmB265
Cp4.1LG15g08450Melon (DHL92) v3.5.1cpemeB215
Cp4.1LG15g08450Melon (DHL92) v3.5.1cpemeB243
Cp4.1LG15g08450Cucumber (Gy14) v2cgybcpeB034
Cp4.1LG15g08450Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g08450Silver-seed gourdcarcpeB0042
Cp4.1LG15g08450Silver-seed gourdcarcpeB0541
Cp4.1LG15g08450Silver-seed gourdcarcpeB0751
Cp4.1LG15g08450Silver-seed gourdcarcpeB1121
Cp4.1LG15g08450Cucumber (Chinese Long) v3cpecucB0314
Cp4.1LG15g08450Cucumber (Chinese Long) v3cpecucB0322