CmaCh19G010380 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G010380
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCLAVATA3/ESR-RELATED 7
LocationCma_Chr19 : 8815631 .. 8815909 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCACCCATCACCGTTTCAACCCAAAATTTGCTCCATTAATGGGCGTTCTTTTCATGGTGATGCTTGTCACTGCGGCGGCCGGCCGCCATGCAGTGCCGCTGAGGACGGAGGCGGCGGCCATTGAAGGTGGCAGCAGCAGCATGATAATGCGTAGGTTGGGTTATACCAAAAGCCAAATGGAGCATTTAAGAAGGCTTTCTTCTTCCACTGCAAGATACATACCTGGAGGGCCTGATTCTCAACATCATTCTCGATCACCTCGTTTACCGTAG

mRNA sequence

ATGGCAGCCACCCATCACCGTTTCAACCCAAAATTTGCTCCATTAATGGGCGTTCTTTTCATGGTGATGCTTGTCACTGCGGCGGCCGGCCGCCATGCAGTGCCGCTGAGGACGGAGGCGGCGGCCATTGAAGGTGGCAGCAGCAGCATGATAATGCGTAGGTTGGGTTATACCAAAAGCCAAATGGAGCATTTAAGAAGGCTTTCTTCTTCCACTGCAAGATACATACCTGGAGGGCCTGATTCTCAACATCATTCTCGATCACCTCGTTTACCGTAG

Coding sequence (CDS)

ATGGCAGCCACCCATCACCGTTTCAACCCAAAATTTGCTCCATTAATGGGCGTTCTTTTCATGGTGATGCTTGTCACTGCGGCGGCCGGCCGCCATGCAGTGCCGCTGAGGACGGAGGCGGCGGCCATTGAAGGTGGCAGCAGCAGCATGATAATGCGTAGGTTGGGTTATACCAAAAGCCAAATGGAGCATTTAAGAAGGCTTTCTTCTTCCACTGCAAGATACATACCTGGAGGGCCTGATTCTCAACATCATTCTCGATCACCTCGTTTACCGTAG

Protein sequence

MAATHHRFNPKFAPLMGVLFMVMLVTAAAGRHAVPLRTEAAAIEGGSSSMIMRRLGYTKSQMEHLRRLSSSTARYIPGGPDSQHHSRSPRLP
Homology
[Close]
BLAST of CmaCh19G010380 vs. TrEMBL
Match: A0A0A0KGI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419510 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.2e-18
Identity = 59/91 (64.84%), Postives = 64/91 (70.33%), Query Frame = 1 

Query: 7  RFNPKFAP-LMGVLFMVMLVTAAAGRHAVPLR---TEAAAIEGGSSSMIMRRLGYTKSQM 66
          RFN   AP LM VLFM MLVTAA   HA  L     EA      SS+M+MR+ GY+K QM
Sbjct: 4  RFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQM 63

Query: 67 EHLRRLSSS-TARYIPGGPDSQHHSRSPRLP 93
          EHLRRLSSS T RYIPGGPDSQHHS+ PRLP
Sbjct: 64 EHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 94

[Close]
BLAST of CmaCh19G010380 vs. NCBI nr
Match: gi|700192750|gb|KGN47954.1| (hypothetical protein Csa_6G419510 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 4.6e-18
Identity = 59/91 (64.84%), Postives = 64/91 (70.33%), Query Frame = 1 

Query: 7  RFNPKFAP-LMGVLFMVMLVTAAAGRHAVPLR---TEAAAIEGGSSSMIMRRLGYTKSQM 66
          RFN   AP LM VLFM MLVTAA   HA  L     EA      SS+M+MR+ GY+K QM
Sbjct: 4  RFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQM 63

Query: 67 EHLRRLSSS-TARYIPGGPDSQHHSRSPRLP 93
          EHLRRLSSS T RYIPGGPDSQHHS+ PRLP
Sbjct: 64 EHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 94

The following BLAST results are available for this feature:
BLAST of CmaCh19G010380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh19G010380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGI4_CUCSA3.2e-1864.84Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419510 PE=4 SV=1[more]
BLAST of CmaCh19G010380 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh19G010380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192750|gb|KGN47954.1|4.6e-1864.84hypothetical protein Csa_6G419510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G010380.1CmaCh19G010380.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G010380Cla016272Watermelon (97103) v1cmawmB477
CmaCh19G010380Csa6G419510Cucumber (Chinese Long) v2cmacuB519
CmaCh19G010380MELO3C014424Melon (DHL92) v3.5.1cmameB476
CmaCh19G010380ClCG09G011330Watermelon (Charleston Gray)cmawcgB446
CmaCh19G010380CmoCh11G020030Cucurbita moschata (Rifu)cmacmoB492
CmaCh19G010380Lsi11G016860Bottle gourd (USVL1VR-Ls)cmalsiB474
CmaCh19G010380Cp4.1LG15g08450Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G010380Cp4.1LG04g02720Cucurbita pepo (Zucchini)cmacpeB537
CmaCh19G010380MELO3C014424.2Melon (DHL92) v3.6.1cmamedB552
CmaCh19G010380CsaV3_6G037620Cucumber (Chinese Long) v3cmacucB0628
CmaCh19G010380Cla97C09G174060Watermelon (97103) v2cmawmbB554
CmaCh19G010380Bhi05G001830Wax gourdcmawgoB0650
CmaCh19G010380CsGy6G021740Cucumber (Gy14) v2cgybcmaB780
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G010380Melon (DHL92) v3.6.1cmamedB522
CmaCh19G010380Melon (DHL92) v3.6.1cmamedB534
CmaCh19G010380Silver-seed gourdcarcmaB0039
CmaCh19G010380Silver-seed gourdcarcmaB0547
CmaCh19G010380Silver-seed gourdcarcmaB0745
CmaCh19G010380Cucumber (Chinese Long) v3cmacucB0630
CmaCh19G010380Cucumber (Chinese Long) v3cmacucB0638
CmaCh19G010380Watermelon (97103) v2cmawmbB528
CmaCh19G010380Wax gourdcmawgoB0654
CmaCh19G010380Wax gourdcmawgoB0666
CmaCh19G010380Cucurbita maxima (Rimu)cmacmaB148
CmaCh19G010380Cucurbita maxima (Rimu)cmacmaB442
CmaCh19G010380Cucurbita maxima (Rimu)cmacmaB454
CmaCh19G010380Cucurbita maxima (Rimu)cmacmaB463
CmaCh19G010380Cucumber (Gy14) v1cgycmaB0041
CmaCh19G010380Cucumber (Gy14) v1cgycmaB0524
CmaCh19G010380Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G010380Cucurbita moschata (Rifu)cmacmoB514
CmaCh19G010380Cucurbita moschata (Rifu)cmacmoB526
CmaCh19G010380Wild cucumber (PI 183967)cmacpiB525
CmaCh19G010380Wild cucumber (PI 183967)cmacpiB532
CmaCh19G010380Wild cucumber (PI 183967)cmacpiB533
CmaCh19G010380Cucumber (Chinese Long) v2cmacuB526
CmaCh19G010380Cucumber (Chinese Long) v2cmacuB527
CmaCh19G010380Melon (DHL92) v3.5.1cmameB452
CmaCh19G010380Melon (DHL92) v3.5.1cmameB461
CmaCh19G010380Melon (DHL92) v3.5.1cmameB484
CmaCh19G010380Watermelon (Charleston Gray)cmawcgB458
CmaCh19G010380Watermelon (97103) v1cmawmB498
CmaCh19G010380Watermelon (97103) v1cmawmB500
CmaCh19G010380Cucurbita pepo (Zucchini)cmacpeB527
CmaCh19G010380Cucurbita pepo (Zucchini)cmacpeB534
CmaCh19G010380Cucurbita pepo (Zucchini)cmacpeB546
CmaCh19G010380Bottle gourd (USVL1VR-Ls)cmalsiB471
CmaCh19G010380Cucumber (Gy14) v2cgybcmaB781
CmaCh19G010380Cucumber (Gy14) v2cgybcmaB944