Cp4.1LG04g02720 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g02720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG04 : 7667530 .. 7667802 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAATCTTCGTTTCAGCTCAAAACTTGCTCCATTCATGGCTGTCCTTTTCATAGGGATGCTTCTCGTCACTGTCGCCGGCCGCCATGCAACGCCGCCATGGACGACGGAGGAGGTCACTGAGAGCAGCAACAGCATTATGATAATGCGTAAATTTGGTTATAGCAAAACCCAAATGGAGCATTTGAGAAGACTCTCTTCTTCCACTGACAGATACACTCCTGGAGGACCTGATTCTCAACATCATTCTCATCCACCTCGTCTACCGTAG

mRNA sequence

ATGGCCAATCTTCGTTTCAGCTCAAAACTTGCTCCATTCATGGCTGTCCTTTTCATAGGGATGCTTCTCGTCACTGTCGCCGGCCGCCATGCAACGCCGCCATGGACGACGGAGGAGGTCACTGAGAGCAGCAACAGCATTATGATAATGCGTAAATTTGGTTATAGCAAAACCCAAATGGAGCATTTGAGAAGACTCTCTTCTTCCACTGACAGATACACTCCTGGAGGACCTGATTCTCAACATCATTCTCATCCACCTCGTCTACCGTAG

Coding sequence (CDS)

ATGGCCAATCTTCGTTTCAGCTCAAAACTTGCTCCATTCATGGCTGTCCTTTTCATAGGGATGCTTCTCGTCACTGTCGCCGGCCGCCATGCAACGCCGCCATGGACGACGGAGGAGGTCACTGAGAGCAGCAACAGCATTATGATAATGCGTAAATTTGGTTATAGCAAAACCCAAATGGAGCATTTGAGAAGACTCTCTTCTTCCACTGACAGATACACTCCTGGAGGACCTGATTCTCAACATCATTCTCATCCACCTCGTCTACCGTAG

Protein sequence

MANLRFSSKLAPFMAVLFIGMLLVTVAGRHATPPWTTEEVTESSNSIMIMRKFGYSKTQMEHLRRLSSSTDRYTPGGPDSQHHSHPPRLP
Homology
[Close]
BLAST of Cp4.1LG04g02720 vs. TrEMBL
Match: A0A0A0KGI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419510 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.0e-21
Identity = 63/92 (68.48%), Postives = 69/92 (75.00%), Query Frame = 1 

Query: 4  LRFSSKLAP-FMAVLFIGMLLVTVAGRHATPP-WTTEEVTE--SSNSIMIMRKFGYSKTQ 63
          LRF+  LAP  MAVLF+ ML+      HAT   WT EE TE  SS+S M+MRKFGYSK Q
Sbjct: 3  LRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQ 62

Query: 64 MEHLRRLSSS-TDRYTPGGPDSQHHSHPPRLP 91
          MEHLRRLSSS T+RY PGGPDSQHHS PPRLP
Sbjct: 63 MEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 94

[Close]
BLAST of Cp4.1LG04g02720 vs. NCBI nr
Match: gi|700192750|gb|KGN47954.1| (hypothetical protein Csa_6G419510 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 5.7e-21
Identity = 63/92 (68.48%), Postives = 69/92 (75.00%), Query Frame = 1 

Query: 4  LRFSSKLAP-FMAVLFIGMLLVTVAGRHATPP-WTTEEVTE--SSNSIMIMRKFGYSKTQ 63
          LRF+  LAP  MAVLF+ ML+      HAT   WT EE TE  SS+S M+MRKFGYSK Q
Sbjct: 3  LRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQ 62

Query: 64 MEHLRRLSSS-TDRYTPGGPDSQHHSHPPRLP 91
          MEHLRRLSSS T+RY PGGPDSQHHS PPRLP
Sbjct: 63 MEHLRRLSSSSTERYIPGGPDSQHHSQPPRLP 94

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g02720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g02720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGI4_CUCSA4.0e-2168.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G419510 PE=4 SV=1[more]
BLAST of Cp4.1LG04g02720 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g02720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192750|gb|KGN47954.1|5.7e-2168.48hypothetical protein Csa_6G419510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g02720.1Cp4.1LG04g02720.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g02720CmaCh19G010380Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g02720CmoCh11G020030Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g02720CmoCh19G010680Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g02720Cla016272Watermelon (97103) v1cpewmB633
Cp4.1LG04g02720Csa6G419510Cucumber (Chinese Long) v2cpecuB683
Cp4.1LG04g02720MELO3C014424Melon (DHL92) v3.5.1cpemeB634
Cp4.1LG04g02720ClCG09G011330Watermelon (Charleston Gray)cpewcgB579
Cp4.1LG04g02720Lsi11G016860Bottle gourd (USVL1VR-Ls)cpelsiB531
Cp4.1LG04g02720MELO3C014424.2Melon (DHL92) v3.6.1cpemedB758
Cp4.1LG04g02720CsaV3_6G037620Cucumber (Chinese Long) v3cpecucB0854
Cp4.1LG04g02720CsGy6G021740Cucumber (Gy14) v2cgybcpeB838
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g02720Cp4.1LG15g08450Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g02720Wax gourdcpewgoB0854
Cp4.1LG04g02720Wax gourdcpewgoB0865
Cp4.1LG04g02720Cucurbita pepo (Zucchini)cpecpeB306
Cp4.1LG04g02720Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g02720Cucumber (Gy14) v1cgycpeB0511
Cp4.1LG04g02720Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g02720Cucurbita maxima (Rimu)cmacpeB573
Cp4.1LG04g02720Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g02720Cucurbita moschata (Rifu)cmocpeB524
Cp4.1LG04g02720Cucurbita moschata (Rifu)cmocpeB592
Cp4.1LG04g02720Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g02720Wild cucumber (PI 183967)cpecpiB687
Cp4.1LG04g02720Bottle gourd (USVL1VR-Ls)cpelsiB523
Cp4.1LG04g02720Watermelon (Charleston Gray)cpewcgB592
Cp4.1LG04g02720Watermelon (Charleston Gray)cpewcgB622
Cp4.1LG04g02720Watermelon (97103) v1cpewmB637
Cp4.1LG04g02720Watermelon (97103) v1cpewmB651
Cp4.1LG04g02720Watermelon (97103) v1cpewmB668
Cp4.1LG04g02720Silver-seed gourdcarcpeB0047
Cp4.1LG04g02720Silver-seed gourdcarcpeB0547
Cp4.1LG04g02720Silver-seed gourdcarcpeB0754