Csa6G417860 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G417860
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)
Location	Chr6 : 19233355 .. 19235385 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTGATACCATGGGAGGAACATATATTGATTGATGAAGACAATGGAATTGAAGAGAAAGAAAATCCATTAAGAAATTGGAGTAATAATAATGGGGAATTAGAAGAAATATTTATCGATATCCAATCATCAAAAAGTGGAGAAGAAGCATTATTATTACCAAATGAAATAATTGGATCACTTGTGGAAGATTCAACATTATTGGGTTTGGAGGAAAATGATCATAGTATTGATGGAGTTTTAGAGAGAGAAAATTCAAAATTATTTCCACCAACATCCATTAATGTTCATAATGAAGAACCCTCAAATTCAAATAAAGCAAATGCAAAGAAAGAAGAACACAATGCTAGAGAAAGACAAAGGAGGTTGAAACTCTCTCACTCCTATTTTTCACTTCGCTCTTTGCTTCCCAATGCTAGAAGATCAAAGGTTAGTATATATTTCACTTTTTTATTTTTATTGTTGTTGGTTTTTAAGATTTTTTTTTTTCTTTTATCCATAAATTTTAAACAATGTCTTATAGGTTTTTGAAGTTTTTAAAAACTATAAAATGTTCAATCTTATATATAGTCAAGGGACAACCTCGACAGAAAAGATCCTTATGAGAATCTAGTAAATAATTTGAAGTATGAATTCTTGATCATGAATACGTTCTAGAAGTGCTCAAACCCACCAAATTTACTTCAATTTCGATCCTTAGATAAAGATTACCTTAACATCAAACCTGTTGAGCTAAATAATATGTTTTTAGACCCAAATATTGCCATAAGATCGAAAAGCTCTCTGGACAAAAGAGATCAAAATTCATTCATTGTAAAAACTGTCCAAAGTTAAATATGATAAGGCAAAACCTTTTATATGGTTTCCAAGTGAAGCCCTAATGCCAAATGATCAATCATGCATGCCAAAATTACAAAATAACATCTCTACTTATAAATATTTCACAAAAGGAATAAAATTGAAAAACATAAAAGTTATGATCAATATATATAGATGAAAATATATGAACAATATATAGTTTGATATCCTAGGCACTTCAAATCAAAAAAGGGTTTGGAGTCACTACAACACATGAGGTTTAAGTGAGTTGAATACTAAATATTCTTCACAATAATTTGAAACCCTAATAATAATTTGAAGTTTTGTTTGCAGAAAAGATGGAGCGCAGGAACCATAATCGACAAAGTTGTAGACTACATTCCAACACTACAAAAAGAGATTGAAAATATGAACCAAAAGAAACAAAAATTGATAAAAGCAAAAAAAAATATGAGCAATAATAATGAAAGAGTATCAGTATCAGTTGAAGAAAATGAAGGGTTAGATCAATATTATAATAATATCAATCCAACTGTTTCAATCCATCAACTTTGCAAAGGAGAAGTCATAATCCAAATATGCATAAACCCAAGAAATAATAATAATAAGTTGTCAAATTTGATAGAAAAGGCAGAAGCAGAAGGCCTAAGGATCATTGGTGCTTCCACAGTTTCTGTTTCTCATGACCATCAGATTCTTACCTCCCATTTGCATATTCAGGTATTTGTACAATTATGTTCCTTTGGAAAAAAAAATACTTATGCTTTGTTTTCGTTTTCGTTTTCCATTATATTATATATTTATATATATATAGCCTTTGGGGTGAAATAATTTGTATTCTCAGTTAAAGTTATGCCAATTTGATGATATATAACAACAATTTCATTACTTTTTAAAAATTAGATTTAGGTTAAATTATAAGAAATGCATTAACTTTTCAAGTTTTGGAACCCCATAATCTTAATTTATTGATTATACAGTCTCAAATGCTGTTAATCATTAAAAATTCACGAGATTGAGGACATCCATCCAACAGAAAGAACCCTAACATTCTTGTTAAGAAAGATTTAAAAGAAGTGATGGGTTTCATTATTACACCTTGAATTGATGATGAATTGTATATTTGTGCAGATGATGGATAGGAGTTTACAAGAAGCTGCTGATTATGAATCAATGTTAAGAAAAAGGGTAATCTCTTGGCTATGTTGA

mRNA sequence

ATGTCATTGATACCATGGGAGGAACATATATTGATTGATGAAGACAATGGAATTGAAGAGAAAGAAAATCCATTAAGAAATTGGAGTAATAATAATGGGGAATTAGAAGAAATATTTATCGATATCCAATCATCAAAAAGTGGAGAAGAAGCATTATTATTACCAAATGAAATAATTGGATCACTTGTGGAAGATTCAACATTATTGGGTTTGGAGGAAAATGATCATAGTATTGATGGAGTTTTAGAGAGAGAAAATTCAAAATTATTTCCACCAACATCCATTAATGTTCATAATGAAGAACCCTCAAATTCAAATAAAGCAAATGCAAAGAAAGAAGAACACAATGCTAGAGAAAGACAAAGGAGGTTGAAACTCTCTCACTCCTATTTTTCACTTCGCTCTTTGCTTCCCAATGCTAGAAGATCAAAGGCAGAAGCAGAAGGCCTAAGGATCATTGGTGCTTCCACAGTTTCTGTTTCTCATGACCATCAGATTCTTACCTCCCATTTGCATATTCAGATGATGGATAGGAGTTTACAAGAAGCTGCTGATTATGAATCAATGTTAAGAAAAAGGGTAATCTCTTGGCTATGTTGA

Coding sequence (CDS)

ATGTCATTGATACCATGGGAGGAACATATATTGATTGATGAAGACAATGGAATTGAAGAGAAAGAAAATCCATTAAGAAATTGGAGTAATAATAATGGGGAATTAGAAGAAATATTTATCGATATCCAATCATCAAAAAGTGGAGAAGAAGCATTATTATTACCAAATGAAATAATTGGATCACTTGTGGAAGATTCAACATTATTGGGTTTGGAGGAAAATGATCATAGTATTGATGGAGTTTTAGAGAGAGAAAATTCAAAATTATTTCCACCAACATCCATTAATGTTCATAATGAAGAACCCTCAAATTCAAATAAAGCAAATGCAAAGAAAGAAGAACACAATGCTAGAGAAAGACAAAGGAGGTTGAAACTCTCTCACTCCTATTTTTCACTTCGCTCTTTGCTTCCCAATGCTAGAAGATCAAAGGCAGAAGCAGAAGGCCTAAGGATCATTGGTGCTTCCACAGTTTCTGTTTCTCATGACCATCAGATTCTTACCTCCCATTTGCATATTCAGATGATGGATAGGAGTTTACAAGAAGCTGCTGATTATGAATCAATGTTAAGAAAAAGGGTAATCTCTTGGCTATGTTGA

Protein sequence

MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIGSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARERQRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC*

Homology

[Close]

BLAST of Csa6G417860 vs. TrEMBL
Match: A0A0A0KGG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417860 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.6e-107
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60
           MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG
Sbjct: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60

Query: 61  SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER 120
           SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER
Sbjct: 61  SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER 120

Query: 121 QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL 180
           QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL
Sbjct: 121 QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL 180

Query: 181 QEAADYESMLRKRVISWLC 200
           QEAADYESMLRKRVISWLC
Sbjct: 181 QEAADYESMLRKRVISWLC 199

[Close]

BLAST of Csa6G417860 vs. NCBI nr
Match: gi|700192730|gb|KGN47934.1| (hypothetical protein Csa_6G417860 [Cucumis sativus])

HSP 1 Score: 396.7 bits (1018), Expect = 2.3e-107
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60
           MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG
Sbjct: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60

Query: 61  SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER 120
           SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER
Sbjct: 61  SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER 120

Query: 121 QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL 180
           QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL
Sbjct: 121 QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL 180

Query: 181 QEAADYESMLRKRVISWLC 200
           QEAADYESMLRKRVISWLC
Sbjct: 181 QEAADYESMLRKRVISWLC 199

[Close]

BLAST of Csa6G417860 vs. NCBI nr
Match: gi|659097032|ref|XP_008449406.1| (PREDICTED: transcription factor bHLH100 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 2.1e-60
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60
           MSL PWEEHILIDEDNGIEE+E PLRNWSNNNGELEEI   I+ SKSGEEALLLPNEIIG
Sbjct: 1   MSLTPWEEHILIDEDNGIEEEETPLRNWSNNNGELEEI---IRLSKSGEEALLLPNEIIG 60

Query: 61  -SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARE 120
            SLVEDSTLLGL+E+D +I GVLERENSKLFPP SIN HNEEPSNSNK NAKKEEHNARE
Sbjct: 61  RSLVEDSTLLGLKESD-NIYGVLERENSKLFPPPSINAHNEEPSNSNKENAKKEEHNARE 120

Query: 121 RQRRLKLSHSYFSLRSLLPNARRSK 145
           RQRRL+LSHSYFSLRSLLPNARRSK
Sbjct: 121 RQRRLELSHSYFSLRSLLPNARRSK 141

[Close]

BLAST of Csa6G417860 vs. NCBI nr
Match: gi|659097032|ref|XP_008449406.1| (PREDICTED: transcription factor bHLH100 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1


Query: 144 KAEAEGLRIIGASTVSVSH-DHQILTSHLHIQMMDRSLQEAADYESMLRKRVISWLC 200
           KAE EGLRIIGASTVSVSH DHQILTSHLH+QMMDRSLQEAAD +S+ RKRVISWLC
Sbjct: 244 KAEEEGLRIIGASTVSVSHHDHQILTSHLHVQMMDRSLQEAADNKSISRKRVISWLC 300

The following BLAST results are available for this feature:

BLAST of Csa6G417860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGG0_CUCSA	1.6e-107	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417860 PE=4 SV=1	[more]

BLAST of Csa6G417860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192730\|gb\|KGN47934.1\|	2.3e-107	100.00	hypothetical protein Csa_6G417860 [Cucumis sativus]	[more]
gi\|659097032\|ref\|XP_008449406.1\|	2.1e-60	87.59	PREDICTED: transcription factor bHLH100 [Cucumis melo]	[more]
gi\|659097032\|ref\|XP_008449406.1\|	2.2e-17	87.72	PREDICTED: transcription factor bHLH100 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000166	nucleotide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU102884	cucumber EST collection version 3.0	transcribed_cluster
CU142109	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G417860.1	Csa6G417860.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU102884	CU102884	transcribed_cluster
CU142109	CU142109	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 109..148 score: 2.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 111..143 score: 6.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 110..190 score: 9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 102..144 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G417860	Lsi03G008520	Bottle gourd (USVL1VR-Ls)	culsiB446
Csa6G417860	MELO3C031137.2	Melon (DHL92) v3.6.1	cumedB469
Csa6G417860	Bhi05G000595	Wax gourd	cuwgoB560
Csa6G417860	CSPI06G22350	Wild cucumber (PI 183967)	cpicuB313
Csa6G417860	Cucsa.184810	Cucumber (Gy14) v1	cgycuB282
Csa6G417860	CmaCh19G002920	Cucurbita maxima (Rimu)	cmacuB523
Csa6G417860	CmoCh19G003210	Cucurbita moschata (Rifu)	cmocuB515
Csa6G417860	Cp4.1LG15g02630	Cucurbita pepo (Zucchini)	cpecuB251
Csa6G417860	Carg24593	Silver-seed gourd	carcuB0665

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G417860	Cucurbita pepo (Zucchini)	cpecuB687
Csa6G417860	Cucumber (Gy14) v2	cgybcuB281
Csa6G417860	Silver-seed gourd	carcuB0421
Csa6G417860	Silver-seed gourd	carcuB0752
Csa6G417860	Watermelon (97103) v2	cuwmbB511
Csa6G417860	Watermelon (97103) v2	cuwmbB513
Csa6G417860	Cucurbita maxima (Rimu)	cmacuB140
Csa6G417860	Cucurbita moschata (Rifu)	cmocuB128
Csa6G417860	Melon (DHL92) v3.5.1	cumeB489
Csa6G417860	Watermelon (Charleston Gray)	cuwcgB421
Csa6G417860	Watermelon (Charleston Gray)	cuwcgB422