Cp4.1LG15g02630 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g02630
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG15 : 2560376 .. 2561724 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGACACCATGGGAGAGTTATTATACATTGACCGATGAAAACAATGGGGAAGAACAAACCCTATTGCCAAAAGGTGGCGAAGCATTGTGTGGTGAGATTGGTGGGTCTATGGGGGAAGTTGCAGCATTATTGGGTTTGGAGGAAGACATTTATGGAGGTTTAGGGAGAGAAAATGCAGCATTTCCACCAGCCATGAATGCCAATATTGAACCCTCTAATGCTAAGAAAGAAGAACATAATGCTAGAGAAAGACAAAGGAGGATGGAGCTTTCTCAATTGTACTTTTCCCTTCGATCCTTGCTTCCTAATGCTCGACGATCCAAGGTTCGTATGTATTCTTCTCGTTTTTTAGGTTAAATTACACGTTTCATCCAAACCCTTTTTAAGTTTGCGGATATTTGTGATATTCGAGTAAAGGAGAGAGGTACATGAATGAATCAAAGTCCCATTCGAATGAGAGATACTAAGAAAAGTTTGAATTGAAAGTTATTATCTATACTAATAAAGTGTACCTTCCTTTTCGGTAACTCAATTGTAAGAACTCCAAAGTTAAGTGACATTTGTTTGGAACAATTCTATTTCTTGTGACCTCCTAAAAATTTTTCTAGTTAGCGTGTGAGAACAAAAGATGCTGAAATGATCTGTGCTGGTCTAAGAGGATAATCTTTACTTCTAGAAGCGAAGAGTAAGTAACTTGCCATGTCGTGGGCAAATATTGAGGATACGAGGTGTCGAGAATCTAGATTCCAAATCCTATTGCAAATCTTGGAGATGGGTCATTACAACATTTCATGTTGAAACCATGCAATAGGATCGGCTTGTGATGTTTCTAAATGCTTCTACTCTTTTGGTTCTATGAGTCTCGACTAACTCTGTTATGCAATAAGAAATCCACAAATGAGTGAAAAGACCAATACAGATGGATAGAAAGCTAATGTTTTTCCCCTCGAAGCCAAAAATCTTTCTTTCTTCTCCATGGCAAAGGTCTAACCTTAAAAGAGTGTGTCATAAGTGTGGTTAAAGTCCTATTCAACAAAATCATCAAAGTTTAGGAATCTATAGACATTTTTAAAGGTTAGAGAGAGATATGAACGATAAAGAAGATAGAAACCCTAATATTTGAGGGTTATTGCAGAAGAGGTGGAGCTCGACGACCATAATCGACAAAGTTGTAGATTACATTCCCACACTACAAAAGGAGATTGAAAATATGAAGGAAAAGAAGCAAAAAATGATAAAAGAGAAAGGAAAGAGTAATGAAAGAGTATTAGTGGATGAAAAGGAAGGGTTAGAAAATGATAATCTAAGTGTTTTGGTGCATCAAGTTTGCAAAGGAGAAGTGA

mRNA sequence

ATGGCTGTGACACCATGGGAGAGTTATTATACATTGACCGATGAAAACAATGGGGAAGAACAAACCCTATTGCCAAAAGGTGGCGAAGCATTGTGTGGTGAGATTGGTGGGTCTATGGGGGAAGTTGCAGCATTATTGGGTTTGGAGGAAGACATTTATGGAGGTTTAGGGAGAGAAAATGCAGCATTTCCACCAGCCATGAATGCCAATATTGAACCCTCTAATGCTAAGAAAGAAGAACATAATGCTAGAGAAAGACAAAGGAGGATGGAGCTTTCTCAATTGTACTTTTCCCTTCGATCCTTGCTTCCTAATGCTCGACGATCCAAGTTTGCAAAGGAGAAGTGA

Coding sequence (CDS)

ATGGCTGTGACACCATGGGAGAGTTATTATACATTGACCGATGAAAACAATGGGGAAGAACAAACCCTATTGCCAAAAGGTGGCGAAGCATTGTGTGGTGAGATTGGTGGGTCTATGGGGGAAGTTGCAGCATTATTGGGTTTGGAGGAAGACATTTATGGAGGTTTAGGGAGAGAAAATGCAGCATTTCCACCAGCCATGAATGCCAATATTGAACCCTCTAATGCTAAGAAAGAAGAACATAATGCTAGAGAAAGACAAAGGAGGATGGAGCTTTCTCAATTGTACTTTTCCCTTCGATCCTTGCTTCCTAATGCTCGACGATCCAAGTTTGCAAAGGAGAAGTGA

Protein sequence

MAVTPWESYYTLTDENNGEEQTLLPKGGEALCGEIGGSMGEVAALLGLEEDIYGGLGRENAAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLRSLLPNARRSKFAKEK
Homology
[Close]
BLAST of Cp4.1LG15g02630 vs. TrEMBL
Match: A0A0A0KGG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417860 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.3e-15
Identity = 69/149 (46.31%), Postives = 83/149 (55.70%), Query Frame = 1 

Query: 1   MAVTPWESYYTLTDENNGEEQTLLP---------------------KGGEA---LCGEIG 60
           M++ PWE +  L DE+NG E+   P                     K GE    L  EI 
Sbjct: 1   MSLIPWEEHI-LIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEII 60

Query: 61  GSMGEVAALLGLEED---IYGGLGRENAAFPPAMNANI---EP-----SNAKKEEHNARE 115
           GS+ E + LLGLEE+   I G L REN+   P  + N+   EP     +NAKKEEHNARE
Sbjct: 61  GSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARE 120

[Close]
BLAST of Cp4.1LG15g02630 vs. NCBI nr
Match: gi|659097032|ref|XP_008449406.1| (PREDICTED: transcription factor bHLH100 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 2.2e-17
Identity = 75/142 (52.82%), Postives = 88/142 (61.97%), Query Frame = 1 

Query: 1   MAVTPWESYYTLTDENNG--EEQT-----------------LLPKGGEALCGE---IGGS 60
           M++TPWE +  L DE+NG  EE+T                 L   G EAL      IG S
Sbjct: 1   MSLTPWEEHI-LIDEDNGIEEEETPLRNWSNNNGELEEIIRLSKSGEEALLLPNEIIGRS 60

Query: 61  MGEVAALLGLEE--DIYGGLGRENAAF--PPAMNA-NIEPSN-----AKKEEHNARERQR 111
           + E + LLGL+E  +IYG L REN+    PP++NA N EPSN     AKKEEHNARERQR
Sbjct: 61  LVEDSTLLGLKESDNIYGVLERENSKLFPPPSINAHNEEPSNSNKENAKKEEHNARERQR 120

[Close]
BLAST of Cp4.1LG15g02630 vs. NCBI nr
Match: gi|700192730|gb|KGN47934.1| (hypothetical protein Csa_6G417860 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-14
Identity = 69/149 (46.31%), Postives = 83/149 (55.70%), Query Frame = 1 

Query: 1   MAVTPWESYYTLTDENNGEEQTLLP---------------------KGGEA---LCGEIG 60
           M++ PWE +  L DE+NG E+   P                     K GE    L  EI 
Sbjct: 1   MSLIPWEEHI-LIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEII 60

Query: 61  GSMGEVAALLGLEED---IYGGLGRENAAFPPAMNANI---EP-----SNAKKEEHNARE 115
           GS+ E + LLGLEE+   I G L REN+   P  + N+   EP     +NAKKEEHNARE
Sbjct: 61  GSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARE 120

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g02630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g02630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KGG0_CUCSA9.3e-1546.31Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417860 PE=4 SV=1[more]
BLAST of Cp4.1LG15g02630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g02630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659097032|ref|XP_008449406.1|2.2e-1752.82PREDICTED: transcription factor bHLH100 [Cucumis melo][more]
gi|700192730|gb|KGN47934.1|1.3e-1446.31hypothetical protein Csa_6G417860 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g02630.1Cp4.1LG15g02630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 75..109
score: 3.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 77..110
score: 2.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 76..115
score: 10
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 74..108
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g02630Cucsa.184810Cucumber (Gy14) v1cgycpeB0506
Cp4.1LG15g02630CmaCh19G002920Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g02630CmoCh19G003210Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g02630Csa6G417860Cucumber (Chinese Long) v2cpecuB251
Cp4.1LG15g02630CSPI06G22350Wild cucumber (PI 183967)cpecpiB253
Cp4.1LG15g02630MELO3C031137.2Melon (DHL92) v3.6.1cpemedB279
Cp4.1LG15g02630CsaV3_6G037460Cucumber (Chinese Long) v3cpecucB0318
Cp4.1LG15g02630Bhi05G000595Wax gourdcpewgoB0329
Cp4.1LG15g02630Carg24593Silver-seed gourdcarcpeB0919
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g02630Cucurbita pepo (Zucchini)cpecpeB268
Cp4.1LG15g02630Cucurbita maxima (Rimu)cmacpeB120
Cp4.1LG15g02630Cucurbita moschata (Rifu)cmocpeB094
Cp4.1LG15g02630Bottle gourd (USVL1VR-Ls)cpelsiB206
Cp4.1LG15g02630Watermelon (Charleston Gray)cpewcgB219
Cp4.1LG15g02630Watermelon (97103) v1cpewmB239
Cp4.1LG15g02630Melon (DHL92) v3.5.1cpemeB238
Cp4.1LG15g02630Cucumber (Gy14) v2cgybcpeB752
Cp4.1LG15g02630Silver-seed gourdcarcpeB1034