CSPI06G22350 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G22350
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 20271126 .. 20273143 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTGATACCATGGGAGGAACATATATTGATTGATGAAGACAATGGAATTGAAGAGAAAGAAAATCCATTAAGAAATTGGAGTAATAATAATGGGGAATTAGAAGAAATATTTATCGATATCCAATCATCAAAAAGTGGAGAAGAAGCATTATTATTACCAAATGAAATAATTGGATCACTTGTGGAAGATTCAACATTATTGGGTTTGGAGGAAAATGATCATAGTATTGATGGAGTTTTAGAGAGAGAAAATTCAAAATTATTTCCACCAACATCCATTAATGTTCATAATGAAGAACCCTCAAATTCAAATAAAGCAAATGCAAAGAAAGAAGAACACAATGCTAGAGAAAGACAAAGGAGGTTGAAACTCTCTCACTCCTATTTTTCACTTCGCTCTTTGCTTCCCAATGCTAGAAGATCAAAGGTTAGTATATATTTCACTTTTTTATTTTTATTGTTGTTGGTTTAAGATTTTTTTTTTCCTTTATCCATAAATTTTAAACAATGTCTTATAGGTTTTTGAAGTTTTTAAAAACTATAAAATGTTCAATCTTATATATAGTCAAGGGACAACCTCGACAGAAAAGATCCTTATGAGAATCTAGTAAATAATTTGAAGTATGAATTCTTGATCATGAATACGTTCTAGAAGTGCTCAAACCCACCAAATTTACTTCAATTTCGATCCTTAGATAAAGATTACCTTAACATCAAACCTGTTGAGCTAAATAATATGTTTTTAGACTCAAATATTGCCATAAGATCGAAAAGCTCTCTGGACAAAAGAGATCAAAATTCATTCATTGTAAAAACTATCCAAAGTTAAATATGATAAGGCAAAACCTTTTATATGGTCTCCAAGTGAAGCCCTAATGCCAAATGATCAATCATGCATGCCAAAATTACAAAATAACATCTACTTATAAATATTTCACAAAAGGAATAAAATTGAAAAACATAAAAGTTATGATCAATATATATAGATGAAAATATATGAACAATATATAGTTTGATATCCTAGGCACTTCAAATCAAAAAAGGGTTTGGAGTCACTACAACACATGAGGTTTAAGTGAGTTGAATACTAAATATTCTTCACAATAATTTGAAACCCTAATAATAATTTGAAGTTTTGTTTGCAGAAAAGATGGAGCGCAGGAACCATAATCGACAAAGTTGTAGACTACATTCCAACACTACAAAAAGAGATTGAAAATATGAACCAAAAGAAACAAAAACTGATAAAAGCAAAAAACAATATGAGCAATAATAATGAAAGAGTATCAGTATCAGTTGAAGAAAATGAAGGGTTAGATCAATATTATAATAATATCAATCCAACTGTTTCAATCCATCAACTTTGCAAAGGAGAAGTCATAATCCAAATATGCATAAACCCAAGAAATAATAATAATAAGTTGTCAAATTTGATAGAAAAGGCAGAAGCAGAAGGCCTAAGGATCATTGGTGCTTCCACAGTTTCTGTTTCTCATGACCATCAGATTCTTACCTCCCATTTGCATATTCAGGTATTTGTACAATTATGTTCCTTTGGAAAAAAAAATACTTATGCTTTGTTTTCGTTTTCGTTTTCCATTATATTATATATATATAGCCTTTGGGGTGAAATAATTTGTATTTTCAATTAAAGTTATGCCAATTTGATGATATATAACAACAATTTCATTACTTTTTAAAAATTAGATTTAGGTTAAATGATAAGAAATGCATTAACTTTTCAAGTTTTGGAACCCCATAATCTTAATTTATTGATTATACAGTCTCAAATGCTGTTAATCATTAAAAATTCACGAGATTGAGGACATCCATCCAACAGAAAGAACCCTAACATTCTTGTTAAGAAAGATTTAAAAGAAGTGATGGGTTTCATTATTACACCTTGAATTGATGATGAATTGTATATTTGTGCAGATGATGGATAGGAGTTTACAAGAAGCTGCTGATTATGAATCAATGTTAAGAAAAAGGGTAATCTCTTGGCTATGTTGA

mRNA sequence

ATGTCATTGATACCATGGGAGGAACATATATTGATTGATGAAGACAATGGAATTGAAGAGAAAGAAAATCCATTAAGAAATTGGAGTAATAATAATGGGGAATTAGAAGAAATATTTATCGATATCCAATCATCAAAAAGTGGAGAAGAAGCATTATTATTACCAAATGAAATAATTGGATCACTTGTGGAAGATTCAACATTATTGGGTTTGGAGGAAAATGATCATAGTATTGATGGAGTTTTAGAGAGAGAAAATTCAAAATTATTTCCACCAACATCCATTAATGTTCATAATGAAGAACCCTCAAATTCAAATAAAGCAAATGCAAAGAAAGAAGAACACAATGCTAGAGAAAGACAAAGGAGGTTGAAACTCTCTCACTCCTATTTTTCACTTCGCTCTTTGCTTCCCAATGCTAGAAGATCAAAGGCAGAAGCAGAAGGCCTAAGGATCATTGGTGCTTCCACAGTTTCTGTTTCTCATGACCATCAGATTCTTACCTCCCATTTGCATATTCAGATGATGGATAGGAGTTTACAAGAAGCTGCTGATTATGAATCAATGTTAAGAAAAAGGGTAATCTCTTGGCTATGTTGA

Coding sequence (CDS)

ATGTCATTGATACCATGGGAGGAACATATATTGATTGATGAAGACAATGGAATTGAAGAGAAAGAAAATCCATTAAGAAATTGGAGTAATAATAATGGGGAATTAGAAGAAATATTTATCGATATCCAATCATCAAAAAGTGGAGAAGAAGCATTATTATTACCAAATGAAATAATTGGATCACTTGTGGAAGATTCAACATTATTGGGTTTGGAGGAAAATGATCATAGTATTGATGGAGTTTTAGAGAGAGAAAATTCAAAATTATTTCCACCAACATCCATTAATGTTCATAATGAAGAACCCTCAAATTCAAATAAAGCAAATGCAAAGAAAGAAGAACACAATGCTAGAGAAAGACAAAGGAGGTTGAAACTCTCTCACTCCTATTTTTCACTTCGCTCTTTGCTTCCCAATGCTAGAAGATCAAAGGCAGAAGCAGAAGGCCTAAGGATCATTGGTGCTTCCACAGTTTCTGTTTCTCATGACCATCAGATTCTTACCTCCCATTTGCATATTCAGATGATGGATAGGAGTTTACAAGAAGCTGCTGATTATGAATCAATGTTAAGAAAAAGGGTAATCTCTTGGCTATGTTGA

Homology

[Close]

BLAST of CSPI06G22350 vs. TrEMBL
Match: A0A0A0KGG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417860 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 4.9e-104
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60
           MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG
Sbjct: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60

Query: 61  SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER 120
           SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER
Sbjct: 61  SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER 120

Query: 121 QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL 180
           QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL
Sbjct: 121 QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL 180

Query: 181 QEAADYESMLRKRVISWLC 200
           QEAADYESMLRKRVISWLC
Sbjct: 181 QEAADYESMLRKRVISWLC 199

[Close]

BLAST of CSPI06G22350 vs. NCBI nr
Match: gi|700192730|gb|KGN47934.1| (hypothetical protein Csa_6G417860 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 7.0e-104
Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1


Query: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60
           MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG
Sbjct: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60

Query: 61  SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER 120
           SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER
Sbjct: 61  SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARER 120

Query: 121 QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL 180
           QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL
Sbjct: 121 QRRLKLSHSYFSLRSLLPNARRSKAEAEGLRIIGASTVSVSHDHQILTSHLHIQMMDRSL 180

Query: 181 QEAADYESMLRKRVISWLC 200
           QEAADYESMLRKRVISWLC
Sbjct: 181 QEAADYESMLRKRVISWLC 199

[Close]

BLAST of CSPI06G22350 vs. NCBI nr
Match: gi|659097032|ref|XP_008449406.1| (PREDICTED: transcription factor bHLH100 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 6.4e-57
Identity = 127/145 (87.59%), Postives = 133/145 (91.72%), Query Frame = 1


Query: 1   MSLIPWEEHILIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEIIG 60
           MSL PWEEHILIDEDNGIEE+E PLRNWSNNNGELEEI   I+ SKSGEEALLLPNEIIG
Sbjct: 1   MSLTPWEEHILIDEDNGIEEEETPLRNWSNNNGELEEI---IRLSKSGEEALLLPNEIIG 60

Query: 61  -SLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARE 120
            SLVEDSTLLGL+E+D +I GVLERENSKLFPP SIN HNEEPSNSNK NAKKEEHNARE
Sbjct: 61  RSLVEDSTLLGLKESD-NIYGVLERENSKLFPPPSINAHNEEPSNSNKENAKKEEHNARE 120

Query: 121 RQRRLKLSHSYFSLRSLLPNARRSK 145
           RQRRL+LSHSYFSLRSLLPNARRSK
Sbjct: 121 RQRRLELSHSYFSLRSLLPNARRSK 141

The following BLAST results are available for this feature:

BLAST of CSPI06G22350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G22350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGG0_CUCSA	4.9e-104	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417860 PE=4 SV=1	[more]

BLAST of CSPI06G22350 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G22350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192730\|gb\|KGN47934.1\|	7.0e-104	100.00	hypothetical protein Csa_6G417860 [Cucumis sativus]	[more]
gi\|659097032\|ref\|XP_008449406.1\|	6.4e-57	87.59	PREDICTED: transcription factor bHLH100 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G22350.1	CSPI06G22350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 109..148 score: 2.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 111..143 score: 6.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 110..190 score: 9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 102..144 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G22350	Csa6G417860	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G22350	Lsi03G008520	Bottle gourd (USVL1VR-Ls)	cpilsiB454
CSPI06G22350	MELO3C031137.2	Melon (DHL92) v3.6.1	cpimedB478
CSPI06G22350	CsaV3_6G037460	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G22350	Bhi05G000595	Wax gourd	cpiwgoB565
CSPI06G22350	Cucsa.184810	Cucumber (Gy14) v1	cgycpiB292
CSPI06G22350	CmaCh19G002920	Cucurbita maxima (Rimu)	cmacpiB529
CSPI06G22350	CmoCh19G003210	Cucurbita moschata (Rifu)	cmocpiB522
CSPI06G22350	Cp4.1LG15g02630	Cucurbita pepo (Zucchini)	cpecpiB253
CSPI06G22350	Carg24593	Silver-seed gourd	carcpiB0674

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G22350	Melon (DHL92) v3.5.1	cpimeB491
CSPI06G22350	Watermelon (Charleston Gray)	cpiwcgB441
CSPI06G22350	Cucurbita pepo (Zucchini)	cpecpiB691
CSPI06G22350	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G22350	Silver-seed gourd	carcpiB0425
CSPI06G22350	Silver-seed gourd	carcpiB0768
CSPI06G22350	Watermelon (97103) v2	cpiwmbB537
CSPI06G22350	Cucurbita maxima (Rimu)	cmacpiB137
CSPI06G22350	Cucurbita moschata (Rifu)	cmocpiB128