CmaCh19G002920 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G002920
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr19 : 2234213 .. 2236065 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGTAAGACGGTCAAGCTACATGCACCGGTTTGGCCCAATCATTTAGCAACTCTTTCCAAGATAAGAGAATGTAAATAAAAAAAACATGCCTCACGGCCTGGTGGTCAGCGTAACATTAACGACATTTGTTGTATTGCTCTCATTTGAATGTAATCTCAATTCATTCATGTACTCCTCCTTTACTCGAATGTCAATAAGATCAAATTGAAATTTCGCTTAAAATGTGAGTAACATCCTACCTAATCTATTTGTCACATGAATTACAAGATAAAAAATATTAAAATTAAAACAACTGAAAAAAAATAATAAATAATTACCATCTGACATATTATTTTATTTATTGAGTGGGTCCTTAATATTTGTAGAAATCAATTTTTTGAGTTTATCTTCAAAAAACAAAAACATTTTTGAGTTGAGAATTGACTTTATAGATATATATATATATATATATATATATATTTATTGGTGGGGTTTTGTGTTGGGATGTATAAGAAGAGAAAATGACCTAATTACCATCTCTTTCTTTTCTCCATGAAAACGAATCAGATTTCCAGTTTGTTTATCTCCTTCCTCCTTCGCAGCCAACTCAGATAAGAGATCAAAGGTACCCTCAAATCATTAAACCAATTAAATTTCTTTTGCTTTTGCTTTGTTTCTATCCCTTTTTTGTTTAGAACATATTGTTGTTGTTTTCTTTTATGGAAAAAGGTCAAACACTTTGGAATGTTCTTGGATAAGGCGATTATAGTTAAAATTAGGATAATTTCATAAGATATGGGCTAATTCAATGTGTTTTCGAATGGATTTGCTGGAAACGAAGATAAAAGGGGAGTTTTTGTCCTTAAAGTATGGCGGTGACACCATGGGAGAGTTATTATACATTGACCGATGAAAACAATGGGGAAGAAGAAACCCAATTGCCAAAAGGTGGCGAAGCATTGTGTGGTGAGAAAGGTGGGTCTATGGCAGAAGTTGCAGCATTATTGGGTTTGGAGGAAGACATTTATGGAGGTTTTGGGAGAGAAAATGAGGCATTTCCACCAGCCATGAATGCCAATATTGAACCCTCTAATGCTAAGAAAGAAGAACATAATGCTAGAGAAAGACAAAGGAGGATGGAGCTTTCTCAGTTGTACTTTTCCCTTCGATCCTTGCTTCCTAATGCTCGACGATCCAAGGTCCGTATGTATTACTTCTCGTTTTTTAGGTTAAATTACACGTTCCATCCAAACCCGTTTAAGTTTGTGGATATTTGTGATATTCGAGTAAAGGAGAGGTACATGAATGAATCAAAGTGACATTTGAATGAGAGCGAAGATTGCTAAGAAAAGTTTAAAAGAATGGAAAGATACTATCTAAGGTGTACCTTCTTTTTCGGTAACTTAGTCTAAAAATGGTTATTGTAGCATAAACTCTCGTGACTTTACTTTTAGTTTTCTAAAAAGGTCTCATAGAGATGTATTCCTTTACTTATAAACCTATGATCAATCCCTTAATTAGTCGACGAGGGACTCCTCCCCCAGCAATCCTCAACAAAGAACTCTAGAGCAAAGTGAGCAATTCTATATTTTGTGACGTTTTAAGAGTTTTTCTAGTAAGTATGTGAGTGATGACAAAATATGCTAAAATGATATATGCTGGTGTAGGAGGATAATCTTTACTTCTAGAATCAAAGAGTAAGTAACTTGACCATGTTGCAAGCTGGATTCCGAATCCTAATACGAATCTTGGACATGGGTCATTACAACATTTTATGTTGAAAACATGCAATAGGATCGACCTGTAGCCCAAGTGGTTTGGACATTTCCAAATGCTTTTACTCCTTTTGTTCTATGAATCTCGACTAA

mRNA sequence

ATGACAGATTTCCAGTTTGTTTATCTCCTTCCTCCTTCGCAGCCAACTCAGATAAGAGATCAAAGTATGGCGGTGACACCATGGGAGAGTTATTATACATTGACCGATGAAAACAATGGGGAAGAAGAAACCCAATTGCCAAAAGGTGGCGAAGCATTGTGTGGTGAGAAAGGTGGGTCTATGGCAGAAGTTGCAGCATTATTGGGTTTGGAGGAAGACATTTATGGAGGTTTTGGGAGAGAAAATGAGGCATTTCCACCAGCCATGAATGCCAATATTGAACCCTCTAATGCTAAGAAAGAAGAACATAATGCTAGAGAAAGACAAAGGAGGATGGAGCTTTCTCAGTTGTACTTTTCCCTTCGATCCTTGCTTCCTAATGCTCGACGATCCAAGGTCCGATCGACCTGTAGCCCAAGTGGTTTGGACATTTCCAAATGCTTTTACTCCTTTTGTTCTATGAATCTCGACTAA

Coding sequence (CDS)

ATGACAGATTTCCAGTTTGTTTATCTCCTTCCTCCTTCGCAGCCAACTCAGATAAGAGATCAAAGTATGGCGGTGACACCATGGGAGAGTTATTATACATTGACCGATGAAAACAATGGGGAAGAAGAAACCCAATTGCCAAAAGGTGGCGAAGCATTGTGTGGTGAGAAAGGTGGGTCTATGGCAGAAGTTGCAGCATTATTGGGTTTGGAGGAAGACATTTATGGAGGTTTTGGGAGAGAAAATGAGGCATTTCCACCAGCCATGAATGCCAATATTGAACCCTCTAATGCTAAGAAAGAAGAACATAATGCTAGAGAAAGACAAAGGAGGATGGAGCTTTCTCAGTTGTACTTTTCCCTTCGATCCTTGCTTCCTAATGCTCGACGATCCAAGGTCCGATCGACCTGTAGCCCAAGTGGTTTGGACATTTCCAAATGCTTTTACTCCTTTTGTTCTATGAATCTCGACTAA

Protein sequence

MTDFQFVYLLPPSQPTQIRDQSMAVTPWESYYTLTDENNGEEETQLPKGGEALCGEKGGSMAEVAALLGLEEDIYGGFGRENEAFPPAMNANIEPSNAKKEEHNARERQRRMELSQLYFSLRSLLPNARRSKVRSTCSPSGLDISKCFYSFCSMNLD

Homology

[Close]

BLAST of CmaCh19G002920 vs. TrEMBL
Match: A0A0A0KGG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417860 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 67/148 (45.27%), Postives = 81/148 (54.73%), Query Frame = 1


Query: 23  MAVTPWESYYTLTDENNGEEETQLP---------------------KGGEA---LCGEKG 82
           M++ PWE +  L DE+NG EE + P                     K GE    L  E  
Sbjct: 1   MSLIPWEEHI-LIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEII 60

Query: 83  GSMAEVAALLGLEED---IYGGFGRENEAFPPAMNANI---EP-----SNAKKEEHNARE 136
           GS+ E + LLGLEE+   I G   REN    P  + N+   EP     +NAKKEEHNARE
Sbjct: 61  GSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARE 120

[Close]

BLAST of CmaCh19G002920 vs. NCBI nr
Match: gi|659097032|ref|XP_008449406.1| (PREDICTED: transcription factor bHLH100 [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.8e-17
Identity = 73/144 (50.69%), Postives = 85/144 (59.03%), Query Frame = 1


Query: 23  MAVTPWESYYTLTDENNGEEETQLP-------------------KGGEALCGEK---GGS 82
           M++TPWE +  L DE+NG EE + P                    G EAL       G S
Sbjct: 1   MSLTPWEEHI-LIDEDNGIEEEETPLRNWSNNNGELEEIIRLSKSGEEALLLPNEIIGRS 60

Query: 83  MAEVAALLGLEE--DIYGGFGRENEAF--PPAMNA-NIEPSN-----AKKEEHNARERQR 135
           + E + LLGL+E  +IYG   REN     PP++NA N EPSN     AKKEEHNARERQR
Sbjct: 61  LVEDSTLLGLKESDNIYGVLERENSKLFPPPSINAHNEEPSNSNKENAKKEEHNARERQR 120

[Close]

BLAST of CmaCh19G002920 vs. NCBI nr
Match: gi|700192730|gb|KGN47934.1| (hypothetical protein Csa_6G417860 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 5.3e-14
Identity = 67/148 (45.27%), Postives = 81/148 (54.73%), Query Frame = 1


Query: 23  MAVTPWESYYTLTDENNGEEETQLP---------------------KGGEA---LCGEKG 82
           M++ PWE +  L DE+NG EE + P                     K GE    L  E  
Sbjct: 1   MSLIPWEEHI-LIDEDNGIEEKENPLRNWSNNNGELEEIFIDIQSSKSGEEALLLPNEII 60

Query: 83  GSMAEVAALLGLEED---IYGGFGRENEAFPPAMNANI---EP-----SNAKKEEHNARE 136
           GS+ E + LLGLEE+   I G   REN    P  + N+   EP     +NAKKEEHNARE
Sbjct: 61  GSLVEDSTLLGLEENDHSIDGVLERENSKLFPPTSINVHNEEPSNSNKANAKKEEHNARE 120

The following BLAST results are available for this feature:

BLAST of CmaCh19G002920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh19G002920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGG0_CUCSA	3.7e-14	45.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G417860 PE=4 SV=1	[more]

BLAST of CmaCh19G002920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh19G002920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097032\|ref\|XP_008449406.1\|	1.8e-17	50.69	PREDICTED: transcription factor bHLH100 [Cucumis melo]	[more]
gi\|700192730\|gb\|KGN47934.1\|	5.3e-14	45.27	hypothetical protein Csa_6G417860 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G002920.1	CmaCh19G002920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 97..131 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 99..132 score: 2.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 98..157 score: 9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 96..133 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G002920	Cucsa.184810	Cucumber (Gy14) v1	cgycmaB0526
CmaCh19G002920	Csa6G417860	Cucumber (Chinese Long) v2	cmacuB523
CmaCh19G002920	CSPI06G22350	Wild cucumber (PI 183967)	cmacpiB529
CmaCh19G002920	CmoCh19G003210	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G002920	Cp4.1LG15g02630	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G002920	MELO3C031137.2	Melon (DHL92) v3.6.1	cmamedB554
CmaCh19G002920	CsaV3_6G037460	Cucumber (Chinese Long) v3	cmacucB0634
CmaCh19G002920	Bhi05G000595	Wax gourd	cmawgoB0655
CmaCh19G002920	Carg24593	Silver-seed gourd	carcmaB0916

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G002920	Cucurbita maxima (Rimu)	cmacmaB153
CmaCh19G002920	Cucurbita moschata (Rifu)	cmacmoB493
CmaCh19G002920	Melon (DHL92) v3.5.1	cmameB479
CmaCh19G002920	Watermelon (Charleston Gray)	cmawcgB443
CmaCh19G002920	Watermelon (97103) v1	cmawmB475
CmaCh19G002920	Cucurbita pepo (Zucchini)	cmacpeB538
CmaCh19G002920	Bottle gourd (USVL1VR-Ls)	cmalsiB482
CmaCh19G002920	Cucumber (Gy14) v2	cgybcmaB785
CmaCh19G002920	Silver-seed gourd	carcmaB1029
CmaCh19G002920	Watermelon (97103) v2	cmawmbB551