Csa6G312030 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G312030
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChromosome chr9 scaffold_7, whole genome shotgun sequence; contains IPR021899 (Protein of unknown function DUF3511)
LocationChr6 : 14855599 .. 14855954 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATACATATTTTTAAAATTTTTCTTTTTACCTTCCTCTCGTGAATTTCCAATGGCTGCCAAAGGAAACAGAGAGAGAGGTGGTGTGCTTAAATCACCGTGTAGGTCAGATACGTATACGGCGGCGCCAACGGCGTGGAATACGCATAGCCATTTACACGGTGGTTCGTCGTCGGTTTCTAACGGCCACGATGAACCGGAGGTTAAAAGGCAACGGCGGATTGCGAAGTACAAGGCTTACGCCGTTGAAAGCAAATTGAAATCGTCGCTTAGAAGTGGGATTCGGTGGGTAAAGATCAAATGCAATGAGCTTCTTCAACGTTGATATTTAATTGATTTAATTATTTCAATTTTCA

mRNA sequence

ATGGCTGCCAAAGGAAACAGAGAGAGAGGTGGTGTGCTTAAATCACCGTGTAGGTCAGATACGTATACGGCGGCGCCAACGGCGTGGAATACGCATAGCCATTTACACGGTGGTTCGTCGTCGGTTTCTAACGGCCACGATGAACCGGAGGTTAAAAGGCAACGGCGGATTGCGAAGTACAAGGCTTACGCCGTTGAAAGCAAATTGAAATCGTCGCTTAGAAGTGGGATTCGGTGGGTAAAGATCAAATGCAATGAGCTTCTTCAACGTTGA

Coding sequence (CDS)

ATGGCTGCCAAAGGAAACAGAGAGAGAGGTGGTGTGCTTAAATCACCGTGTAGGTCAGATACGTATACGGCGGCGCCAACGGCGTGGAATACGCATAGCCATTTACACGGTGGTTCGTCGTCGGTTTCTAACGGCCACGATGAACCGGAGGTTAAAAGGCAACGGCGGATTGCGAAGTACAAGGCTTACGCCGTTGAAAGCAAATTGAAATCGTCGCTTAGAAGTGGGATTCGGTGGGTAAAGATCAAATGCAATGAGCTTCTTCAACGTTGA

Protein sequence

MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR*
Homology
[Close]
BLAST of Csa6G312030 vs. TrEMBL
Match: A0A0A0KCE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G312030 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 8.9e-45
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60
          MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY
Sbjct: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60

Query: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 91
          KAYAVESKLKSSLRSGIRWVKIKCNELLQR
Sbjct: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]
BLAST of Csa6G312030 vs. TrEMBL
Match: A0A0A9PAJ0_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-10
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 

Query: 5   GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYA 64
           G+R    V+K P RS      P   +T S   GGS + +    +PE+KR+RR+A YKAY+
Sbjct: 30  GDRRIDVVVKPPARSPP---PPLPASTKSG--GGSGASAWCFSDPEMKRRRRVASYKAYS 89

Query: 65  VESKLKSSLRSGIRWVKIKCNELL 89
           VE K+KSSLR G RW+K KC+EL+
Sbjct: 90  VEGKVKSSLRRGFRWIKTKCSELI 108

[Close]
BLAST of Csa6G312030 vs. TrEMBL
Match: M0TP99_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.5e-10
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1 

Query: 7   RERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAVE 66
           R +G V  S  RS     AP      S     S S +    +PE+KR+RR+AKYKAYAVE
Sbjct: 48  RVKGNVPSSRRRSPDPPFAPPRRGVSS---SSSRSSAWCFGDPEMKRRRRVAKYKAYAVE 107

Query: 67  SKLKSSLRSGIRWVKIKCNELL 89
            K+KSS+R G RW+KIKC+EL+
Sbjct: 108 GKVKSSIRKGFRWIKIKCSELI 126

[Close]
BLAST of Csa6G312030 vs. TrEMBL
Match: K4AMM2_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_040166mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 5   GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNG-----HDEPEVKRQRRIAK 64
           G+R    V+K P RS      P   +T S   GGS     G       +PE+KR+RR+A 
Sbjct: 64  GDRRLDIVVKPPARSPP---PPLPASTRSGGGGGSGGGGVGGSAWCFSDPEMKRRRRVAS 123

Query: 65  YKAYAVESKLKSSLRSGIRWVKIKCNELL 89
           YKAY+VE K+K+SLR G RW+K KC+EL+
Sbjct: 124 YKAYSVEGKVKASLRRGFRWIKAKCSELI 149

[Close]
BLAST of Csa6G312030 vs. TrEMBL
Match: C5WMK1_SORBI (Putative uncharacterized protein Sb01g037750 OS=Sorghum bicolor GN=Sb01g037750 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-09
Identity = 39/84 (46.43%), Postives = 52/84 (61.90%), Query Frame = 1 

Query: 5   GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYA 64
           G+R    V+K P RS      P   +T S   GG+ S     D PE+KR+RR+A YKAY+
Sbjct: 36  GDRRLDIVVKPPARSPP---PPLPVSTRSGGSGGAGSAWCFSD-PEMKRRRRVASYKAYS 95

Query: 65  VESKLKSSLRSGIRWVKIKCNELL 89
           VE K+K+S R G RW+K KC+EL+
Sbjct: 96  VEGKVKASFRRGFRWIKAKCSELI 115

[Close]
BLAST of Csa6G312030 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 60.1 bits (144), Expect = 8.3e-10
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 19  SDTYTAAPTAWNTHSHLHGGSSSVSN--GHDEPEVKRQRRIAKYKAYAVESKLKSSLRSG 78
           S +YT  PT      +   G SS S+  G  +P+++R++R+  Y+AY VE KLK S R  
Sbjct: 44  STSYTDYPTRIPEDQNPKKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKS 103

Query: 79  IRWVKIKCNELL 89
            +W+K KCN+LL
Sbjct: 104 FKWIKDKCNKLL 115

[Close]
BLAST of Csa6G312030 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 

Query: 36  HGGSSSVSNGHDEPEVKRQRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR 91
           +  SS    G  + E+KR++RIA+YKAY VE K+KS+L++G RW+K KC +++ R
Sbjct: 55  NASSSLRIGGLSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHR 109

[Close]
BLAST of Csa6G312030 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 57.0 bits (136), Expect = 7.0e-09
Identity = 28/83 (33.73%), Postives = 47/83 (56.63%), Query Frame = 1 

Query: 14  KSPCRSDTYT--------AAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAV 73
           +SP ++D +           P   ++HS L  G        ++PE+KR+RR+AKYK Y+ 
Sbjct: 45  RSPIKTDIWRKMSYKDMPVRPRRSSSHSTLFKG------WWNDPEIKRKRRVAKYKLYSA 104

Query: 74  ESKLKSSLRSGIRWVKIKCNELL 89
           E K+K +LR   +W+KI+C++++
Sbjct: 105 EGKMKITLRKSYKWIKIQCSKII 121

[Close]
BLAST of Csa6G312030 vs. TAIR10
Match: AT5G11970.1 (AT5G11970.1 Protein of unknown function (DUF3511))

HSP 1 Score: 47.4 bits (111), Expect = 5.6e-06
Identity = 20/48 (41.67%), Postives = 31/48 (64.58%), Query Frame = 1 

Query: 41  SVSNGHDEPEVKRQRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELL 89
           S S G  +PE++R++R+A YK Y VE K+K S R+  RW+K +  +++
Sbjct: 54  SKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVV 101

[Close]
BLAST of Csa6G312030 vs. TAIR10
Match: AT4G09890.1 (AT4G09890.1 Protein of unknown function (DUF3511))

HSP 1 Score: 47.0 bits (110), Expect = 7.3e-06
Identity = 25/71 (35.21%), Postives = 42/71 (59.15%), Query Frame = 1 

Query: 19 SDTYTAAPTAWNTHSHLHGGSSSVS---NG---HDEPEVKRQRRIAKYKAYAVESKLKSS 78
          S +YT   ++++T    +  + S S   NG   + +PE+KR++R+A Y  +A E KLKS+
Sbjct: 5  SKSYTEYSSSFSTDEFGYDQNRSNSYNFNGPCINTDPEMKRKKRVASYNLFATEEKLKST 64

Query: 79 LRSGIRWVKIK 84
          L++  +W+K K
Sbjct: 65 LKNSFKWIKNK 75

[Close]
BLAST of Csa6G312030 vs. NCBI nr
Match: gi|700192196|gb|KGN47400.1| (hypothetical protein Csa_6G312030 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60
          MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY
Sbjct: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60

Query: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 91
          KAYAVESKLKSSLRSGIRWVKIKCNELLQR
Sbjct: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]
BLAST of Csa6G312030 vs. NCBI nr
Match: gi|695047519|ref|XP_009411641.1| (PREDICTED: uncharacterized protein LOC103993342 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-10
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1 

Query: 7   RERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAVE 66
           R +G V  S  RS     AP      S     S S +    +PE+KR+RR+AKYKAYAVE
Sbjct: 48  RVKGNVPSSRRRSPDPPFAPPRRGVSS---SSSRSSAWCFGDPEMKRRRRVAKYKAYAVE 107

Query: 67  SKLKSSLRSGIRWVKIKCNELL 89
            K+KSS+R G RW+KIKC+EL+
Sbjct: 108 GKVKSSIRKGFRWIKIKCSELI 126

[Close]
BLAST of Csa6G312030 vs. NCBI nr
Match: gi|944226828|gb|KQK91232.1| (hypothetical protein SETIT_040166mg, partial [Setaria italica])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 5   GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNG-----HDEPEVKRQRRIAK 64
           G+R    V+K P RS      P   +T S   GGS     G       +PE+KR+RR+A 
Sbjct: 64  GDRRLDIVVKPPARSPP---PPLPASTRSGGGGGSGGGGVGGSAWCFSDPEMKRRRRVAS 123

Query: 65  YKAYAVESKLKSSLRSGIRWVKIKCNELL 89
           YKAY+VE K+K+SLR G RW+K KC+EL+
Sbjct: 124 YKAYSVEGKVKASLRRGFRWIKAKCSELI 149

[Close]
BLAST of Csa6G312030 vs. NCBI nr
Match: gi|514819917|ref|XP_004984650.1| (PREDICTED: uncharacterized protein LOC101764593 [Setaria italica])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 5   GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNG-----HDEPEVKRQRRIAK 64
           G+R    V+K P RS      P   +T S   GGS     G       +PE+KR+RR+A 
Sbjct: 42  GDRRLDIVVKPPARSPP---PPLPASTRSGGGGGSGGGGVGGSAWCFSDPEMKRRRRVAS 101

Query: 65  YKAYAVESKLKSSLRSGIRWVKIKCNELL 89
           YKAY+VE K+K+SLR G RW+K KC+EL+
Sbjct: 102 YKAYSVEGKVKASLRRGFRWIKAKCSELI 127

[Close]
BLAST of Csa6G312030 vs. NCBI nr
Match: gi|296083284|emb|CBI22920.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-09
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 6   NRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAV 65
           N +  GV   P RS   + +       ++ +  SSS S G  +PE+KR++RIA YKAY V
Sbjct: 29  NMQVSGVSYPPPRSGKTSVSK------NYYYEDSSSSSWGFSDPEIKRRKRIALYKAYGV 88

Query: 66  ESKLKSSLRSGIRWVKIKCNELL 89
           E K+K+SLR G RWVK KC++L+
Sbjct: 89  EGKMKASLRGGFRWVKNKCSQLI 105

The following BLAST results are available for this feature:
BLAST of Csa6G312030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCE9_CUCSA8.9e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G312030 PE=4 SV=1[more]
A0A0A9PAJ0_ARUDO4.2e-1047.62Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
M0TP99_MUSAM5.5e-1048.78Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
K4AMM2_SETIT1.2e-0944.94Uncharacterized protein OS=Setaria italica GN=SETIT_040166mg PE=4 SV=1[more]
C5WMK1_SORBI2.7e-0946.43Putative uncharacterized protein Sb01g037750 OS=Sorghum bicolor GN=Sb01g037750 P... [more]
BLAST of Csa6G312030 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19460.18.3e-1041.67 Protein of unknown function (DUF3511)[more]
AT2G47480.11.1e-0947.27 Protein of unknown function (DUF3511)[more]
AT3G05725.17.0e-0933.73 Protein of unknown function (DUF3511)[more]
AT5G11970.15.6e-0641.67 Protein of unknown function (DUF3511)[more]
AT4G09890.17.3e-0635.21 Protein of unknown function (DUF3511)[more]
BLAST of Csa6G312030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192196|gb|KGN47400.1|1.3e-44100.00hypothetical protein Csa_6G312030 [Cucumis sativus][more]
gi|695047519|ref|XP_009411641.1|7.8e-1048.78PREDICTED: uncharacterized protein LOC103993342 [Musa acuminata subsp. malaccens... [more]
gi|944226828|gb|KQK91232.1|1.7e-0944.94hypothetical protein SETIT_040166mg, partial [Setaria italica][more]
gi|514819917|ref|XP_004984650.1|1.7e-0944.94PREDICTED: uncharacterized protein LOC101764593 [Setaria italica][more]
gi|296083284|emb|CBI22920.3|3.9e-0944.58unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G312030.1Csa6G312030.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 47..88
score: 1.4
NoneNo IPR availablePANTHERPTHR33193FAMILY NOT NAMEDcoord: 36..87
score: 1.1
NoneNo IPR availablePANTHERPTHR33193:SF1SUBFAMILY NOT NAMEDcoord: 36..87
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G312030Cla009265Watermelon (97103) v1cuwmB538
Csa6G312030MELO3C021286Melon (DHL92) v3.5.1cumeB445
Csa6G312030ClCG06G004770Watermelon (Charleston Gray)cuwcgB477
Csa6G312030Lsi09G014700Bottle gourd (USVL1VR-Ls)culsiB403
Csa6G312030MELO3C021286.2Melon (DHL92) v3.6.1cumedB426
Csa6G312030Cla97C06G114230Watermelon (97103) v2cuwmbB469
Csa6G312030Bhi12G001701Wax gourdcuwgoB547
Csa6G312030CSPI06G17190Wild cucumber (PI 183967)cpicuB313
Csa6G312030Cucsa.069480Cucumber (Gy14) v1cgycuB064
Csa6G312030CmaCh08G012580Cucurbita maxima (Rimu)cmacuB904
Csa6G312030CmoCh08G012280Cucurbita moschata (Rifu)cmocuB891
Csa6G312030CmoCh17G003440Cucurbita moschata (Rifu)cmocuB368
Csa6G312030Cp4.1LG12g03070Cucurbita pepo (Zucchini)cpecuB151
Csa6G312030Cp4.1LG17g00440Cucurbita pepo (Zucchini)cpecuB324
Csa6G312030CsGy6G016680Cucumber (Gy14) v2cgybcuB281
Csa6G312030Carg18871Silver-seed gourdcarcuB0724
Csa6G312030Carg05532Silver-seed gourdcarcuB0079
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G312030Watermelon (97103) v2cuwmbB465
Csa6G312030Wax gourdcuwgoB558
Csa6G312030Cucumber (Chinese Long) v2cucuB120
Csa6G312030Cucumber (Gy14) v1cgycuB371
Csa6G312030Cucurbita maxima (Rimu)cmacuB378
Csa6G312030Cucurbita maxima (Rimu)cmacuB845
Csa6G312030Cucurbita moschata (Rifu)cmocuB254
Csa6G312030Melon (DHL92) v3.5.1cumeB497
Csa6G312030Watermelon (Charleston Gray)cuwcgB428
Csa6G312030Watermelon (Charleston Gray)cuwcgB474
Csa6G312030Watermelon (97103) v1cuwmB497
Csa6G312030Cucurbita pepo (Zucchini)cpecuB625
Csa6G312030Cucurbita pepo (Zucchini)cpecuB875
Csa6G312030Bottle gourd (USVL1VR-Ls)culsiB463
Csa6G312030Cucumber (Gy14) v2cgybcuB146
Csa6G312030Melon (DHL92) v3.6.1cumedB477
Csa6G312030Silver-seed gourdcarcuB0307