CSPI06G17190 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G17190
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionProtein of unknown function (DUF3511)
LocationChr6 : 15497825 .. 15498197 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCTCAGTTTTCGTACCATTTTTCCTCTCAAATGAAAATGAATTAAATATATACATATTTTAAAAAATTTTCTTTTTACCTTCCTCTCGTGAATTTCCAATGGCTGCCAAAGGAAACAGAGAGAGAGGTGGTGTGCTTAAATCACCGTGTAGGTCAGATACGTATACGGCGGCGCCAACGGCGTGGAATACGCATAGCCATTTACACGGTGGTTCGTCGTCGGTTTCTAACGGCCACGATGAACCGGAGGTTAAAAGGCAACGGCGGATTGCGAAGTACAAGGCTTACGCCGTTGAAAGCAAATTGAAATCGTCGCTTAGAAGTGGGATTCGGTGGGTAAAGATCAAATGCAATGAGCTTCTTCAACGTTGA

mRNA sequence

ATGGCTGCCAAAGGAAACAGAGAGAGAGGTGGTGTGCTTAAATCACCGTGTAGGTCAGATACGTATACGGCGGCGCCAACGGCGTGGAATACGCATAGCCATTTACACGGTGGTTCGTCGTCGGTTTCTAACGGCCACGATGAACCGGAGGTTAAAAGGCAACGGCGGATTGCGAAGTACAAGGCTTACGCCGTTGAAAGCAAATTGAAATCGTCGCTTAGAAGTGGGATTCGGTGGGTAAAGATCAAATGCAATGAGCTTCTTCAACGTTGA

Coding sequence (CDS)

ATGGCTGCCAAAGGAAACAGAGAGAGAGGTGGTGTGCTTAAATCACCGTGTAGGTCAGATACGTATACGGCGGCGCCAACGGCGTGGAATACGCATAGCCATTTACACGGTGGTTCGTCGTCGGTTTCTAACGGCCACGATGAACCGGAGGTTAAAAGGCAACGGCGGATTGCGAAGTACAAGGCTTACGCCGTTGAAAGCAAATTGAAATCGTCGCTTAGAAGTGGGATTCGGTGGGTAAAGATCAAATGCAATGAGCTTCTTCAACGTTGA
Homology
[Close]
BLAST of CSPI06G17190 vs. TrEMBL
Match: A0A0A0KCE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G312030 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 7.5e-44
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60
          MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY
Sbjct: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60

Query: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 91
          KAYAVESKLKSSLRSGIRWVKIKCNELLQR
Sbjct: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]
BLAST of CSPI06G17190 vs. TrEMBL
Match: M0TP99_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1 

Query: 7   RERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAVE 66
           R +G V  S  RS     AP      S     S S +    +PE+KR+RR+AKYKAYAVE
Sbjct: 48  RVKGNVPSSRRRSPDPPFAPPRRGVSS---SSSRSSAWCFGDPEMKRRRRVAKYKAYAVE 107

Query: 67  SKLKSSLRSGIRWVKIKCNELL 89
            K+KSS+R G RW+KIKC+EL+
Sbjct: 108 GKVKSSIRKGFRWIKIKCSELI 126

[Close]
BLAST of CSPI06G17190 vs. TrEMBL
Match: A0A0A9PAJ0_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 1 

Query: 5   GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYA 64
           G+R    V+K P RS      P   +T S   GGS + +    +PE+KR+RR+A YKAY+
Sbjct: 30  GDRRIDVVVKPPARSPP---PPLPASTKSG--GGSGASAWCFSDPEMKRRRRVASYKAYS 89

Query: 65  VESKLKSSLRSGIRWVKIKCNELL 89
           VE K+KSSLR G RW+K KC+EL+
Sbjct: 90  VEGKVKSSLRRGFRWIKTKCSELI 108

[Close]
BLAST of CSPI06G17190 vs. TrEMBL
Match: K4AMM2_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_040166mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 5   GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNG-----HDEPEVKRQRRIAK 64
           G+R    V+K P RS      P   +T S   GGS     G       +PE+KR+RR+A 
Sbjct: 64  GDRRLDIVVKPPARSPP---PPLPASTRSGGGGGSGGGGVGGSAWCFSDPEMKRRRRVAS 123

Query: 65  YKAYAVESKLKSSLRSGIRWVKIKCNELL 89
           YKAY+VE K+K+SLR G RW+K KC+EL+
Sbjct: 124 YKAYSVEGKVKASLRRGFRWIKAKCSELI 149

[Close]
BLAST of CSPI06G17190 vs. TrEMBL
Match: D7SY63_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01380 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-08
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 6   NRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAV 65
           N +  GV   P RS   + +       ++ +  SSS S G  +PE+KR++RIA YKAY V
Sbjct: 29  NMQVSGVSYPPPRSGKTSVSK------NYYYEDSSSSSWGFSDPEIKRRKRIALYKAYGV 88

Query: 66  ESKLKSSLRSGIRWVKIKCNELL 89
           E K+K+SLR G RWVK KC++L+
Sbjct: 89  EGKMKASLRGGFRWVKNKCSQLI 105

[Close]
BLAST of CSPI06G17190 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 57.0 bits (136), Expect = 7.0e-09
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1 

Query: 36  HGGSSSVSNGHDEPEVKRQRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR 91
           +  SS    G  + E+KR++RIA+YKAY VE K+KS+L++G RW+K KC +++ R
Sbjct: 55  NASSSLRIGGLSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHR 109

[Close]
BLAST of CSPI06G17190 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 57.0 bits (136), Expect = 7.0e-09
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1 

Query: 19  SDTYTAAPTAWNTHSHLHGGSSSVSN--GHDEPEVKRQRRIAKYKAYAVESKLKSSLRSG 78
           S +YT  PT      +   G SS S+  G  +P+++R++R+  Y+AY VE KLK S R  
Sbjct: 44  STSYTDYPTRIPEDQNPKKGRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKS 103

Query: 79  IRWVKIKCNELL 89
            +W+K KCN+LL
Sbjct: 104 FKWIKDKCNKLL 115

[Close]
BLAST of CSPI06G17190 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-08
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 1 

Query: 14  KSPCRSDTYT--------AAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAV 73
           +SP ++D +           P   ++HS L  G        ++PE+KR+RR+AKYK Y+ 
Sbjct: 45  RSPIKTDIWRKMSYKDMPVRPRRSSSHSTLFKG------WWNDPEIKRKRRVAKYKLYSA 104

Query: 74  ESKLKSSLRSGIRWVKIKCNELL 89
           E K+K +LR   +W+KI+C++++
Sbjct: 105 EGKMKITLRKSYKWIKIQCSKII 121

[Close]
BLAST of CSPI06G17190 vs. NCBI nr
Match: gi|700192196|gb|KGN47400.1| (hypothetical protein Csa_6G312030 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 1 

Query: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60
          MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY
Sbjct: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60

Query: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 91
          KAYAVESKLKSSLRSGIRWVKIKCNELLQR
Sbjct: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]
BLAST of CSPI06G17190 vs. NCBI nr
Match: gi|695047519|ref|XP_009411641.1| (PREDICTED: uncharacterized protein LOC103993342 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-09
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1 

Query: 7   RERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAVE 66
           R +G V  S  RS     AP      S     S S +    +PE+KR+RR+AKYKAYAVE
Sbjct: 48  RVKGNVPSSRRRSPDPPFAPPRRGVSS---SSSRSSAWCFGDPEMKRRRRVAKYKAYAVE 107

Query: 67  SKLKSSLRSGIRWVKIKCNELL 89
            K+KSS+R G RW+KIKC+EL+
Sbjct: 108 GKVKSSIRKGFRWIKIKCSELI 126

[Close]
BLAST of CSPI06G17190 vs. NCBI nr
Match: gi|944226828|gb|KQK91232.1| (hypothetical protein SETIT_040166mg, partial [Setaria italica])

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 5   GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNG-----HDEPEVKRQRRIAK 64
           G+R    V+K P RS      P   +T S   GGS     G       +PE+KR+RR+A 
Sbjct: 64  GDRRLDIVVKPPARSPP---PPLPASTRSGGGGGSGGGGVGGSAWCFSDPEMKRRRRVAS 123

Query: 65  YKAYAVESKLKSSLRSGIRWVKIKCNELL 89
           YKAY+VE K+K+SLR G RW+K KC+EL+
Sbjct: 124 YKAYSVEGKVKASLRRGFRWIKAKCSELI 149

[Close]
BLAST of CSPI06G17190 vs. NCBI nr
Match: gi|514819917|ref|XP_004984650.1| (PREDICTED: uncharacterized protein LOC101764593 [Setaria italica])

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 5   GNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNG-----HDEPEVKRQRRIAK 64
           G+R    V+K P RS      P   +T S   GGS     G       +PE+KR+RR+A 
Sbjct: 42  GDRRLDIVVKPPARSPP---PPLPASTRSGGGGGSGGGGVGGSAWCFSDPEMKRRRRVAS 101

Query: 65  YKAYAVESKLKSSLRSGIRWVKIKCNELL 89
           YKAY+VE K+K+SLR G RW+K KC+EL+
Sbjct: 102 YKAYSVEGKVKASLRRGFRWIKAKCSELI 127

[Close]
BLAST of CSPI06G17190 vs. NCBI nr
Match: gi|296083284|emb|CBI22920.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1 

Query: 6   NRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKYKAYAV 65
           N +  GV   P RS   + +       ++ +  SSS S G  +PE+KR++RIA YKAY V
Sbjct: 29  NMQVSGVSYPPPRSGKTSVSK------NYYYEDSSSSSWGFSDPEIKRRKRIALYKAYGV 88

Query: 66  ESKLKSSLRSGIRWVKIKCNELL 89
           E K+K+SLR G RWVK KC++L+
Sbjct: 89  EGKMKASLRGGFRWVKNKCSQLI 105

The following BLAST results are available for this feature:
BLAST of CSPI06G17190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G17190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCE9_CUCSA7.5e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G312030 PE=4 SV=1[more]
M0TP99_MUSAM4.6e-0948.78Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
A0A0A9PAJ0_ARUDO4.6e-0947.62Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
K4AMM2_SETIT1.3e-0844.94Uncharacterized protein OS=Setaria italica GN=SETIT_040166mg PE=4 SV=1[more]
D7SY63_VITVI1.8e-0844.58Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01380 PE=4 SV=... [more]
BLAST of CSPI06G17190 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47480.17.0e-0947.27 Protein of unknown function (DUF3511)[more]
AT2G19460.17.0e-0941.67 Protein of unknown function (DUF3511)[more]
AT3G05725.14.6e-0833.73 Protein of unknown function (DUF3511)[more]
BLAST of CSPI06G17190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192196|gb|KGN47400.1|1.1e-43100.00hypothetical protein Csa_6G312030 [Cucumis sativus][more]
gi|695047519|ref|XP_009411641.1|6.6e-0948.78PREDICTED: uncharacterized protein LOC103993342 [Musa acuminata subsp. malaccens... [more]
gi|944226828|gb|KQK91232.1|1.9e-0844.94hypothetical protein SETIT_040166mg, partial [Setaria italica][more]
gi|514819917|ref|XP_004984650.1|1.9e-0844.94PREDICTED: uncharacterized protein LOC101764593 [Setaria italica][more]
gi|296083284|emb|CBI22920.3|2.5e-0844.58unnamed protein product [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G17190.1CSPI06G17190.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 47..88
score: 1.4
NoneNo IPR availablePANTHERPTHR33193FAMILY NOT NAMEDcoord: 36..87
score: 1.1
NoneNo IPR availablePANTHERPTHR33193:SF1SUBFAMILY NOT NAMEDcoord: 36..87
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G17190Cla009265Watermelon (97103) v1cpiwmB557
CSPI06G17190Csa6G312030Cucumber (Chinese Long) v2cpicuB313
CSPI06G17190MELO3C021286Melon (DHL92) v3.5.1cpimeB435
CSPI06G17190ClCG06G004770Watermelon (Charleston Gray)cpiwcgB504
CSPI06G17190Lsi09G014700Bottle gourd (USVL1VR-Ls)cpilsiB405
CSPI06G17190MELO3C021286.2Melon (DHL92) v3.6.1cpimedB434
CSPI06G17190CsaV3_6G022560Cucumber (Chinese Long) v3cpicucB365
CSPI06G17190CsaV3_4G001090Cucumber (Chinese Long) v3cpicucB355
CSPI06G17190Cla97C06G114230Watermelon (97103) v2cpiwmbB496
CSPI06G17190Bhi12G001701Wax gourdcpiwgoB551
CSPI06G17190Cucsa.069480Cucumber (Gy14) v1cgycpiB065
CSPI06G17190CmaCh08G012580Cucurbita maxima (Rimu)cmacpiB924
CSPI06G17190CmoCh08G012280Cucurbita moschata (Rifu)cmocpiB904
CSPI06G17190CmoCh17G003440Cucurbita moschata (Rifu)cmocpiB371
CSPI06G17190Cp4.1LG12g03070Cucurbita pepo (Zucchini)cpecpiB153
CSPI06G17190Cp4.1LG17g00440Cucurbita pepo (Zucchini)cpecpiB325
CSPI06G17190CsGy6G016680Cucumber (Gy14) v2cgybcpiB287
CSPI06G17190Carg18871Silver-seed gourdcarcpiB0739
CSPI06G17190Carg05532Silver-seed gourdcarcpiB0083
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G17190Cucumber (Gy14) v1cgycpiB390
CSPI06G17190Cucurbita maxima (Rimu)cmacpiB382
CSPI06G17190Cucurbita maxima (Rimu)cmacpiB862
CSPI06G17190Cucurbita moschata (Rifu)cmocpiB260
CSPI06G17190Cucumber (Chinese Long) v2cpicuB293
CSPI06G17190Melon (DHL92) v3.5.1cpimeB461
CSPI06G17190Melon (DHL92) v3.5.1cpimeB500
CSPI06G17190Watermelon (Charleston Gray)cpiwcgB437
CSPI06G17190Watermelon (Charleston Gray)cpiwcgB499
CSPI06G17190Watermelon (97103) v1cpiwmB514
CSPI06G17190Cucurbita pepo (Zucchini)cpecpiB628
CSPI06G17190Bottle gourd (USVL1VR-Ls)cpilsiB471
CSPI06G17190Melon (DHL92) v3.6.1cpimedB486
CSPI06G17190Cucumber (Gy14) v2cgybcpiB149
CSPI06G17190Silver-seed gourdcarcpiB0311
CSPI06G17190Cucumber (Chinese Long) v3cpicucB344
CSPI06G17190Watermelon (97103) v2cpiwmbB490
CSPI06G17190Wax gourdcpiwgoB563
CSPI06G17190Wild cucumber (PI 183967)cpicpiB135