Carg18871 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18871
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein of unknown function (DUF3511)
Location	Cucurbita_argyrosperma_scaffold_162 : 206288 .. 206590 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCAGAGGGCACACAGAGAGAGGAGGTCAGTTAAAATCACCGTGTCGGTCGGATACGTATATAGACACTGAGAATCAACAGCAGTTTCCGGCCGCCCAGACGGCGGCGGGGAATAGACACAGCCATTTACACGGTGGTTCGACGTTTTCCAAAGGCGGCTCCGATGAATCGGAGGTGAAAAGGCAAAAAAGGATAGCGAAGTACAAGGCTTACGCTGTAGAAAGCAAATTCAAGGCGTCGATTAGGAGTGGGATTCGGTGGGTAAAAATCAAGTGTGGTGACCTTCTTCGTCGTTGA

mRNA sequence

ATGGCAGCCAGAGGGCACACAGAGAGAGGAGGTCAGTTAAAATCACCGTGTCGGTCGGATACGTATATAGACACTGAGAATCAACAGCAGTTTCCGGCCGCCCAGACGGCGGCGGGGAATAGACACAGCCATTTACACGGTGGTTCGACGTTTTCCAAAGGCGGCTCCGATGAATCGGAGGTGAAAAGGCAAAAAAGGATAGCGAAGTACAAGGCTTACGCTGTAGAAAGCAAATTCAAGGCGTCGATTAGGAGTGGGATTCGGTGGGTAAAAATCAAGTGTGGTGACCTTCTTCGTCGTTGA

Coding sequence (CDS)

ATGGCAGCCAGAGGGCACACAGAGAGAGGAGGTCAGTTAAAATCACCGTGTCGGTCGGATACGTATATAGACACTGAGAATCAACAGCAGTTTCCGGCCGCCCAGACGGCGGCGGGGAATAGACACAGCCATTTACACGGTGGTTCGACGTTTTCCAAAGGCGGCTCCGATGAATCGGAGGTGAAAAGGCAAAAAAGGATAGCGAAGTACAAGGCTTACGCTGTAGAAAGCAAATTCAAGGCGTCGATTAGGAGTGGGATTCGGTGGGTAAAAATCAAGTGTGGTGACCTTCTTCGTCGTTGA

Protein sequence

MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR

Homology

[Close]

BLAST of Carg18871 vs. NCBI nr
Match: KGN47400.1 (hypothetical protein Csa_6G312030 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-25
Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE 60
           MAA+G+ ERGG LKSPCRSDTY           A   A N HSHLHGGS+    G DE E
Sbjct: 1   MAAKGNRERGGVLKSPCRSDTY----------TAAPTAWNTHSHLHGGSSSVSNGHDEPE 60

Query: 61  VKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           VKRQ+RIAKYKAYAVESK K+S+RSGIRWVKIKC +LL+R
Sbjct: 61  VKRQRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]

BLAST of Carg18871 vs. NCBI nr
Match: XP_022138799.1 (uncharacterized protein LOC111009876 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 3.6e-20
Identity = 62/107 (57.94%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MAARGHTERGGQLKSP--CRSDTYIDTEN-----QQQFPAAQTAAGNRHSHLHGGSTFSK 60
           MA  G+ ERG + KS   C SD Y +  N      Q+FPAA     N H H+HGGS+FS 
Sbjct: 1   MATGGNRERGSEFKSAYICSSDNYGNEMNGRSQVNQRFPAAW---NNTHGHMHGGSSFS- 60

Query: 61  GGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           GG DE E KRQ+RIAKYKAYAVESK K+S R+GIRWVKIKC D+  R
Sbjct: 61  GGYDEPEAKRQRRIAKYKAYAVESKLKSSFRNGIRWVKIKCNDIFHR 103

[Close]

BLAST of Carg18871 vs. NCBI nr
Match: XP_024312486.1 (uncharacterized protein LOC112269736 [Brachypodium distachyon] >KQK14521.1 hypothetical protein BRADI_1g16830v3 [Brachypodium distachyon])

HSP 1 Score: 62.8 bits (151), Expect = 7.8e-07
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 47  GGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           G S+    G D++E+KR+ R+A YKAYAVE K KASIR GIRW+K KC  ++ R
Sbjct: 49  GSSSSWLAGPDQAEMKRRGRVASYKAYAVEGKVKASIRRGIRWIKTKCSHIVHR 102

[Close]

BLAST of Carg18871 vs. NCBI nr
Match: XP_009411641.1 (PREDICTED: uncharacterized protein LOC103993342 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 58  ESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLL 99
           + E+KR++R+AKYKAYAVE K K+SIR G RW+KIKC +L+
Sbjct: 86  DPEMKRRRRVAKYKAYAVEGKVKSSIRKGFRWIKIKCSELI 126

[Close]

BLAST of Carg18871 vs. NCBI nr
Match: OMO82040.1 (hypothetical protein COLO4_23268 [Corchorus olitorius])

HSP 1 Score: 61.2 bits (147), Expect = 2.3e-06
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 38  AGNRHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDL 97
           A NR S    G++   GG  + E KR+KRIAKYK Y VE K KAS+R G+RW+K KC  +
Sbjct: 45  AQNRTSRPSQGTSKPWGGFTDPETKRKKRIAKYKVYTVEGKVKASLRKGLRWIKNKCSQI 104

Query: 98  L 99
           +
Sbjct: 105 V 105

[Close]

BLAST of Carg18871 vs. TAIR10
Match: AT2G47480.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-09
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 0


Query: 32  PAAQTAAGNRHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVK 91
           P  + AAG  ++     S+   GG  ++E+KR+KRIA+YKAY VE K K+++++G RW+K
Sbjct: 45  PPGKVAAGRSNA----SSSLRIGGLSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIK 104

Query: 92  IKCGDLLRR 101
            KC  ++ R
Sbjct: 105 NKCCQIVHR 109

[Close]

BLAST of Carg18871 vs. TAIR10
Match: AT3G05725.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 41  RHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLL 99
           R S  H  ST  KG  ++ E+KR++R+AKYK Y+ E K K ++R   +W+KI+C  ++
Sbjct: 66  RRSSSH--STLFKGWWNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKII 121

[Close]

BLAST of Carg18871 vs. TAIR10
Match: AT2G19460.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 47.4 bits (111), Expect = 6.1e-06
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 49  STFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLL 99
           S+ S  G  + +++R+KR+  Y+AY VE K K S R   +W+K KC  LL
Sbjct: 66  SSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLL 115

[Close]

BLAST of Carg18871 vs. TAIR10
Match: AT3G62640.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 43.5 bits (101), Expect = 8.8e-05
Identity = 17/34 (50.00%), Postives = 26/34 (76.47%), Query Frame = 0


Query: 58  ESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVK 92
           ++E KR+KRIA YK YA+E K K++++ G  W+K
Sbjct: 68  DAETKRKKRIATYKTYALEGKVKSTVKKGFHWIK 101

[Close]

BLAST of Carg18871 vs. TAIR10
Match: AT5G11970.1 (Protein of unknown function (DUF3511))

HSP 1 Score: 41.6 bits (96), Expect = 3.4e-04
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 55 GSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVK 92
          G  + E++R+KR+A YK Y VE K K S R+  RW+K
Sbjct: 58 GITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLK 94

[Close]

BLAST of Carg18871 vs. TrEMBL
Match: tr|A0A0A0KCE9|A0A0A0KCE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312030 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-25
Identity = 66/100 (66.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MAARGHTERGGQLKSPCRSDTYIDTENQQQFPAAQTAAGNRHSHLHGGSTFSKGGSDESE 60
           MAA+G+ ERGG LKSPCRSDTY           A   A N HSHLHGGS+    G DE E
Sbjct: 1   MAAKGNRERGGVLKSPCRSDTY----------TAAPTAWNTHSHLHGGSSSVSNGHDEPE 60

Query: 61  VKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           VKRQ+RIAKYKAYAVESK K+S+RSGIRWVKIKC +LL+R
Sbjct: 61  VKRQRRIAKYKAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]

BLAST of Carg18871 vs. TrEMBL
Match: tr|I1GQX4|I1GQX4_BRADI (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=LOC100843845 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-07
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 47  GGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLRR 101
           G S+    G D++E+KR+ R+A YKAYAVE K KASIR GIRW+K KC  ++ R
Sbjct: 49  GSSSSWLAGPDQAEMKRRGRVASYKAYAVEGKVKASIRRGIRWIKTKCSHIVHR 102

[Close]

BLAST of Carg18871 vs. TrEMBL
Match: tr|M0TP99|M0TP99_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103993342 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 26/41 (63.41%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 58  ESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLL 99
           + E+KR++R+AKYKAYAVE K K+SIR G RW+KIKC +L+
Sbjct: 86  DPEMKRRRRVAKYKAYAVEGKVKSSIRKGFRWIKIKCSELI 126

[Close]

BLAST of Carg18871 vs. TrEMBL
Match: tr|A0A2N9HEJ4|A0A2N9HEJ4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38494 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 55  GSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDLLR 100
           G ++ EVKR+KRIAKYK Y VE K KAS+R G+RW+K KC  ++R
Sbjct: 61  GFNDPEVKRKKRIAKYKVYTVEGKVKASLRKGLRWIKNKCSQIVR 105

[Close]

BLAST of Carg18871 vs. TrEMBL
Match: tr|A0A1R3IHJ9|A0A1R3IHJ9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_23268 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 0


Query: 38  AGNRHSHLHGGSTFSKGGSDESEVKRQKRIAKYKAYAVESKFKASIRSGIRWVKIKCGDL 97
           A NR S    G++   GG  + E KR+KRIAKYK Y VE K KAS+R G+RW+K KC  +
Sbjct: 45  AQNRTSRPSQGTSKPWGGFTDPETKRKKRIAKYKVYTVEGKVKASLRKGLRWIKNKCSQI 104

Query: 98  L 99
           +
Sbjct: 105 V 105

The following BLAST results are available for this feature:

BLAST of Carg18871 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47400.1	1.7e-25	66.00	hypothetical protein Csa_6G312030 [Cucumis sativus]	[more]
XP_022138799.1	3.6e-20	57.94	uncharacterized protein LOC111009876 [Momordica charantia]	[more]
XP_024312486.1	7.8e-07	55.56	uncharacterized protein LOC112269736 [Brachypodium distachyon] >KQK14521.1 hypot...	[more]
XP_009411641.1	1.7e-06	63.41	PREDICTED: uncharacterized protein LOC103993342 [Musa acuminata subsp. malaccens...	[more]
OMO82040.1	2.3e-06	50.82	hypothetical protein COLO4_23268 [Corchorus olitorius]	[more]

BLAST of Carg18871 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47480.1	2.0e-09	42.03	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	1.9e-07	41.38	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	6.1e-06	42.00	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	8.8e-05	50.00	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	3.4e-04	48.65	Protein of unknown function (DUF3511)	[more]

BLAST of Carg18871 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18871 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCE9\|A0A0A0KCE9_CUCSA	1.1e-25	66.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G312030 PE=4 SV=1	[more]
tr\|I1GQX4\|I1GQX4_BRADI	5.1e-07	55.56	Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=LOC100843845 PE=4...	[more]
tr\|M0TP99\|M0TP99_MUSAM	1.1e-06	63.41	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103993...	[more]
tr\|A0A2N9HEJ4\|A0A2N9HEJ4_FAGSY	1.5e-06	60.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38494 PE=4 SV=1	[more]
tr\|A0A1R3IHJ9\|A0A1R3IHJ9_9ROSI	1.5e-06	50.82	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_23268 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021899	DUF3511

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18871-RA	Carg18871-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 57..98 e-value: 6.9E-18 score: 64.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..55
None	No IPR available	PANTHER	PTHR33193:SF1	SUBFAMILY NOT NAMED	coord: 17..99
None	No IPR available	PANTHER	PTHR33193	FAMILY NOT NAMED	coord: 17..99

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18871	Cla009265	Watermelon (97103) v1	carwmB0701
Carg18871	Csa6G312030	Cucumber (Chinese Long) v2	carcuB0724
Carg18871	MELO3C021286	Melon (DHL92) v3.5.1	carmeB0700
Carg18871	ClCG06G004770	Watermelon (Charleston Gray)	carwcgB0681
Carg18871	CSPI06G17190	Wild cucumber (PI 183967)	carcpiB0739
Carg18871	Cucsa.069480	Cucumber (Gy14) v1	carcgyB0785
Carg18871	CmaCh08G012580	Cucurbita maxima (Rimu)	carcmaB0988
Carg18871	CmoCh17G003440	Cucurbita moschata (Rifu)	carcmoB0958
Carg18871	CmoCh08G012280	Cucurbita moschata (Rifu)	carcmoB0960
Carg18871	Lsi09G014700	Bottle gourd (USVL1VR-Ls)	carlsiB641
Carg18871	Cp4.1LG17g00440	Cucurbita pepo (Zucchini)	carcpeB0985
Carg18871	Cp4.1LG12g03070	Cucurbita pepo (Zucchini)	carcpeB0984
Carg18871	CsGy6G016680	Cucumber (Gy14) v2	carcgybB0701
Carg18871	MELO3C021286.2	Melon (DHL92) v3.6.1	carmedB0713
Carg18871	CsaV3_6G022560	Cucumber (Chinese Long) v3	carcucB0742
Carg18871	Cla97C06G114230	Watermelon (97103) v2	carwmbB0735
Carg18871	Bhi12G001701	Wax gourd	carwgoB0826

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18871	Carg05532	Silver-seed gourd	carcarB085

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18871	Silver-seed gourd	carcarB316
Carg18871	Cucumber (Gy14) v2	carcgybB0700
Carg18871	Cucumber (Gy14) v1	carcgyB0788
Carg18871	Cucurbita maxima (Rimu)	carcmaB0984
Carg18871	Cucurbita maxima (Rimu)	carcmaB0985
Carg18871	Cucurbita maxima (Rimu)	carcmaB0987
Carg18871	Cucurbita moschata (Rifu)	carcmoB0957
Carg18871	Cucurbita pepo (Zucchini)	carcpeB0986
Carg18871	Cucurbita pepo (Zucchini)	carcpeB0987
Carg18871	Wild cucumber (PI 183967)	carcpiB0738
Carg18871	Cucumber (Chinese Long) v2	carcuB0723
Carg18871	Cucumber (Chinese Long) v3	carcucB0741
Carg18871	Bottle gourd (USVL1VR-Ls)	carlsiB642
Carg18871	Melon (DHL92) v3.5.1	carmeB0701
Carg18871	Melon (DHL92) v3.6.1	carmedB0714
Carg18871	Watermelon (Charleston Gray)	carwcgB0680
Carg18871	Watermelon (97103) v1	carwmB0700
Carg18871	Watermelon (97103) v2	carwmbB0733
Carg18871	Watermelon (97103) v2	carwmbB0734
Carg18871	Wax gourd	carwgoB0828