Cp4.1LG12g03070 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g03070
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDUF3511 domain protein
LocationCp4.1LG12 : 2018010 .. 2018261 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCCAACGGAAACAGAGGCAGAGGAAGAGAGCTAAAAAAACCTTGTAGATCAGATACGTACGTAAGCAGTGAGAACCACCAGCTACCGGCGGCTTCAACGGCGGCGTGCCACGATGAACCGGAGGCTAAAAGGCAACGGCGGGTTGCGAAGTACAAGGCCTACGCCGTCGAAAGCAAATTCAAAGCATCGCTTAGGAATGGGATTCGGTGGGTTAAGATCAAGTGTAGTGAGCTTCTTAACCGTTGA

mRNA sequence

ATGGCTGCCAACGGAAACAGAGGCAGAGGAAGAGAGCTAAAAAAACCTTGTAGATCAGATACGTACGTAAGCAGTGAGAACCACCAGCTACCGGCGGCTTCAACGGCGGCGTGCCACGATGAACCGGAGGCTAAAAGGCAACGGCGGGTTGCGAAGTACAAGGCCTACGCCGTCGAAAGCAAATTCAAAGCATCGCTTAGGAATGGGATTCGGTGGGTTAAGATCAAGTGTAGTGAGCTTCTTAACCGTTGA

Coding sequence (CDS)

ATGGCTGCCAACGGAAACAGAGGCAGAGGAAGAGAGCTAAAAAAACCTTGTAGATCAGATACGTACGTAAGCAGTGAGAACCACCAGCTACCGGCGGCTTCAACGGCGGCGTGCCACGATGAACCGGAGGCTAAAAGGCAACGGCGGGTTGCGAAGTACAAGGCCTACGCCGTCGAAAGCAAATTCAAAGCATCGCTTAGGAATGGGATTCGGTGGGTTAAGATCAAGTGTAGTGAGCTTCTTAACCGTTGA

Protein sequence

MAANGNRGRGRELKKPCRSDTYVSSENHQLPAASTAACHDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLNR
Homology
[Close]
BLAST of Cp4.1LG12g03070 vs. TrEMBL
Match: A0A0A0KCE9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G312030 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 1 

Query: 1  MAANGNRGRGRELKKPCRSDTYVSSE-----NHQLPAASTAAC--HDEPEAKRQRRVAKY 60
          MAA GNR RG  LK PCRSDTY ++      +  L   S++    HDEPE KRQRR+AKY
Sbjct: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60

Query: 61 KAYAVESKFKASLRNGIRWVKIKCSELLNR 84
          KAYAVESK K+SLR+GIRWVKIKC+ELL R
Sbjct: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]
BLAST of Cp4.1LG12g03070 vs. TrEMBL
Match: M0RPK9_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-10
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 32  AASTAACHDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLN 83
           A S+A C  +PEAKR+RRVA YKAYAVE K KAS R G RW+K+KCSEL++
Sbjct: 94  AGSSAWCFTDPEAKRRRRVASYKAYAVEGKVKASFRKGFRWIKVKCSELVH 144

[Close]
BLAST of Cp4.1LG12g03070 vs. TrEMBL
Match: M0TP99_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-10
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 

Query: 34  STAACHDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLN 83
           S+A C  +PE KR+RRVAKYKAYAVE K K+S+R G RW+KIKCSEL++
Sbjct: 79  SSAWCFGDPEMKRRRRVAKYKAYAVEGKVKSSIRKGFRWIKIKCSELIH 127

[Close]
BLAST of Cp4.1LG12g03070 vs. TrEMBL
Match: C5WMK1_SORBI (Putative uncharacterized protein Sb01g037750 OS=Sorghum bicolor GN=Sb01g037750 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1 

Query: 5   GNRGRGRELKKPCRSDTY---VSSENHQLPAASTAACHDEPEAKRQRRVAKYKAYAVESK 64
           G+R     +K P RS      VS+ +     A +A C  +PE KR+RRVA YKAY+VE K
Sbjct: 36  GDRRLDIVVKPPARSPPPPLPVSTRSGGSGGAGSAWCFSDPEMKRRRRVASYKAYSVEGK 95

Query: 65  FKASLRNGIRWVKIKCSELLN 83
            KAS R G RW+K KCSEL++
Sbjct: 96  VKASFRRGFRWIKAKCSELIH 116

[Close]
BLAST of Cp4.1LG12g03070 vs. TrEMBL
Match: A0A0D9VT39_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 35  TAACHDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLN 83
           +A C  +PE KR+RRVA YKAY+VE K KASLR G RW+K KCSEL++
Sbjct: 69  SAWCFSDPEMKRRRRVASYKAYSVEGKVKASLRRGFRWIKAKCSELIH 116

[Close]
BLAST of Cp4.1LG12g03070 vs. TAIR10
Match: AT2G47480.1 (AT2G47480.1 Protein of unknown function (DUF3511))

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-08
Identity = 22/43 (51.16%), Postives = 35/43 (81.40%), Query Frame = 1 

Query: 41  EPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLNR 84
           + E KR++R+A+YKAY VE K K++L+NG RW+K KC ++++R
Sbjct: 67  DAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHR 109

[Close]
BLAST of Cp4.1LG12g03070 vs. TAIR10
Match: AT3G05725.1 (AT3G05725.1 Protein of unknown function (DUF3511))

HSP 1 Score: 53.9 bits (128), Expect = 5.4e-08
Identity = 22/43 (51.16%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 40  DEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLN 83
           ++PE KR+RRVAKYK Y+ E K K +LR   +W+KI+CS++++
Sbjct: 80  NDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIH 122

[Close]
BLAST of Cp4.1LG12g03070 vs. TAIR10
Match: AT2G19460.1 (AT2G19460.1 Protein of unknown function (DUF3511))

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-06
Identity = 20/42 (47.62%), Postives = 30/42 (71.43%), Query Frame = 1 

Query: 41  EPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLN 83
           +P+ +R++RV  Y+AY VE K K S R   +W+K KC++LLN
Sbjct: 75  DPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

[Close]
BLAST of Cp4.1LG12g03070 vs. NCBI nr
Match: gi|700192196|gb|KGN47400.1| (hypothetical protein Csa_6G312030 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 1 

Query: 1  MAANGNRGRGRELKKPCRSDTYVSSE-----NHQLPAASTAAC--HDEPEAKRQRRVAKY 60
          MAA GNR RG  LK PCRSDTY ++      +  L   S++    HDEPE KRQRR+AKY
Sbjct: 1  MAAKGNRERGGVLKSPCRSDTYTAAPTAWNTHSHLHGGSSSVSNGHDEPEVKRQRRIAKY 60

Query: 61 KAYAVESKFKASLRNGIRWVKIKCSELLNR 84
          KAYAVESK K+SLR+GIRWVKIKC+ELL R
Sbjct: 61 KAYAVESKLKSSLRSGIRWVKIKCNELLQR 90

[Close]
BLAST of Cp4.1LG12g03070 vs. NCBI nr
Match: gi|695070922|ref|XP_009382510.1| (PREDICTED: uncharacterized protein LOC103970456 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 72.0 bits (175), Expect = 5.5e-10
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 32  AASTAACHDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLN 83
           A S+A C  +PEAKR+RRVA YKAYAVE K KAS R G RW+K+KCSEL++
Sbjct: 94  AGSSAWCFTDPEAKRRRRVASYKAYAVEGKVKASFRKGFRWIKVKCSELVH 144

[Close]
BLAST of Cp4.1LG12g03070 vs. NCBI nr
Match: gi|695047519|ref|XP_009411641.1| (PREDICTED: uncharacterized protein LOC103993342 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-09
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 

Query: 34  STAACHDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLN 83
           S+A C  +PE KR+RRVAKYKAYAVE K K+S+R G RW+KIKCSEL++
Sbjct: 79  SSAWCFGDPEMKRRRRVAKYKAYAVEGKVKSSIRKGFRWIKIKCSELIH 127

[Close]
BLAST of Cp4.1LG12g03070 vs. NCBI nr
Match: gi|944226828|gb|KQK91232.1| (hypothetical protein SETIT_040166mg, partial [Setaria italica])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 35  TAACHDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLN 83
           +A C  +PE KR+RRVA YKAY+VE K KASLR G RW+K KCSEL++
Sbjct: 103 SAWCFSDPEMKRRRRVASYKAYSVEGKVKASLRRGFRWIKAKCSELIH 150

[Close]
BLAST of Cp4.1LG12g03070 vs. NCBI nr
Match: gi|514819917|ref|XP_004984650.1| (PREDICTED: uncharacterized protein LOC101764593 [Setaria italica])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 

Query: 35  TAACHDEPEAKRQRRVAKYKAYAVESKFKASLRNGIRWVKIKCSELLN 83
           +A C  +PE KR+RRVA YKAY+VE K KASLR G RW+K KCSEL++
Sbjct: 81  SAWCFSDPEMKRRRRVASYKAYSVEGKVKASLRRGFRWIKAKCSELIH 128

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g03070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g03070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCE9_CUCSA1.2e-1963.33Uncharacterized protein OS=Cucumis sativus GN=Csa_6G312030 PE=4 SV=1[more]
M0RPK9_MUSAM3.8e-1066.67Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
M0TP99_MUSAM8.5e-1067.35Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1[more]
C5WMK1_SORBI1.2e-0848.15Putative uncharacterized protein Sb01g037750 OS=Sorghum bicolor GN=Sb01g037750 P... [more]
A0A0D9VT39_9ORYZ1.2e-0864.58Uncharacterized protein OS=Leersia perrieri PE=4 SV=1[more]
BLAST of Cp4.1LG12g03070 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47480.13.2e-0851.16 Protein of unknown function (DUF3511)[more]
AT3G05725.15.4e-0851.16 Protein of unknown function (DUF3511)[more]
AT2G19460.11.0e-0647.62 Protein of unknown function (DUF3511)[more]
BLAST of Cp4.1LG12g03070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192196|gb|KGN47400.1|1.7e-1963.33hypothetical protein Csa_6G312030 [Cucumis sativus][more]
gi|695070922|ref|XP_009382510.1|5.5e-1066.67PREDICTED: uncharacterized protein LOC103970456 [Musa acuminata subsp. malaccens... [more]
gi|695047519|ref|XP_009411641.1|1.2e-0967.35PREDICTED: uncharacterized protein LOC103993342 [Musa acuminata subsp. malaccens... [more]
gi|944226828|gb|KQK91232.1|1.8e-0864.58hypothetical protein SETIT_040166mg, partial [Setaria italica][more]
gi|514819917|ref|XP_004984650.1|1.8e-0864.58PREDICTED: uncharacterized protein LOC101764593 [Setaria italica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021899DUF3511
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g03070.1Cp4.1LG12g03070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 40..82
score: 2.9
NoneNo IPR availablePANTHERPTHR33193FAMILY NOT NAMEDcoord: 33..80
score: 8.7
NoneNo IPR availablePANTHERPTHR33193:SF1SUBFAMILY NOT NAMEDcoord: 33..80
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g03070Cucsa.069480Cucumber (Gy14) v1cgycpeB0107
Cp4.1LG12g03070CmaCh17G003550Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g03070CmaCh08G012580Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g03070CmoCh08G012280Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g03070CmoCh17G003440Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g03070Cla009265Watermelon (97103) v1cpewmB161
Cp4.1LG12g03070Csa6G312030Cucumber (Chinese Long) v2cpecuB151
Cp4.1LG12g03070MELO3C021286Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g03070ClCG06G004770Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g03070CSPI06G17190Wild cucumber (PI 183967)cpecpiB153
Cp4.1LG12g03070Lsi09G014700Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g03070MELO3C021286.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g03070CsaV3_6G022560Cucumber (Chinese Long) v3cpecucB0175
Cp4.1LG12g03070Bhi12G001701Wax gourdcpewgoB0173
Cp4.1LG12g03070Bhi11G001045Wax gourdcpewgoB0170
Cp4.1LG12g03070CsGy6G016680Cucumber (Gy14) v2cgybcpeB731
Cp4.1LG12g03070Carg05532Silver-seed gourdcarcpeB0099
Cp4.1LG12g03070Carg18871Silver-seed gourdcarcpeB0984
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g03070Cp4.1LG17g00440Cucurbita pepo (Zucchini)cpecpeB158
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g03070Cucurbita pepo (Zucchini)cpecpeB109
Cp4.1LG12g03070Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g03070Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g03070Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g03070Cucurbita maxima (Rimu)cmacpeB812
Cp4.1LG12g03070Cucurbita moschata (Rifu)cmocpeB225
Cp4.1LG12g03070Cucurbita moschata (Rifu)cmocpeB766
Cp4.1LG12g03070Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g03070Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g03070Bottle gourd (USVL1VR-Ls)cpelsiB118
Cp4.1LG12g03070Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g03070Watermelon (97103) v1cpewmB152
Cp4.1LG12g03070Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g03070Cucumber (Gy14) v2cgybcpeB179
Cp4.1LG12g03070Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g03070Melon (DHL92) v3.6.1cpemedB169
Cp4.1LG12g03070Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g03070Silver-seed gourdcarcpeB0393
Cp4.1LG12g03070Cucumber (Chinese Long) v3cpecucB0149
Cp4.1LG12g03070Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g03070Wax gourdcpewgoB0186
Cp4.1LG12g03070Wax gourdcpewgoB0188