Csa6G067960 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G067960
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Classical arabinogalactan protein 25
Location	Chr6 : 4834616 .. 4835141 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAATAATAACAACAACAACAATAGCTCTCCTTGGATTTTCACAAATATATTAGGCTACACACCCTCCAGTGATTTCATCATCATTAGAATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCACCATTGCTTGCTTTACCATCTGTACCCAATCCAAAACCCAGCTCGCCTTTTCAAGAACTCTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGTGATAAGATTCCCTCTGCAACTGGTTCTTCTATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGATGACTTCGAAGCTCTTGGCCCTGATTCCTCTGCCCTTTCGCCATTTGGCCTCCCAGGTTCCTTTGCACCTCCTAATTCCTTGCCTTGCTATTCAAATTGGCTTCTTCTTCTTCTCAATGGCTTAGCACTACTTACCTTCTCTATGCACTTACATTGATTCTGGAAACATCTTTCTGCATAAAGGAGTTCCAATTCTACTTGTACTTGATCCCCCCCCC

mRNA sequence

ATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCACCATTGCTTGCTTTACCATCTGTACCCAATCCAAAACCCAGCTCGCCTTTTCAAGAACTCTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGTGATAAGATTCCCTCTGCAACTGGTTCTTCTATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGATGACTTCGAAGCTCTTGGCCCTGATTCCTCTGCCCTTTCGCCATTTGGCCTCCCAGGTTCCTTTGCACCTCCTAATTCCTTGCCTTGCTATTCAAATTGGCTTCTTCTTCTTCTCAATGGCTTAGCACTACTTACCTTCTCTATGCACTTACATTGA

Coding sequence (CDS)

ATGGCCTCCTTTTGGTATTGTTCAGCAGTCATTATGGTTTTCATGGCCTCACCATTGCTTGCTTTACCATCTGTACCCAATCCAAAACCCAGCTCGCCTTTTCAAGAACTCTCCCCTGAAATTGCTCCATTATTGCCTTCTACTGGTGATAAGATTCCCTCTGCAACTGGTTCTTCTATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGATGACTTCGAAGCTCTTGGCCCTGATTCCTCTGCCCTTTCGCCATTTGGCCTCCCAGGTTCCTTTGCACCTCCTAATTCCTTGCCTTGCTATTCAAATTGGCTTCTTCTTCTTCTCAATGGCTTAGCACTACTTACCTTCTCTATGCACTTACATTGA

Protein sequence

MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFSMHLH*

Homology

[Close]

BLAST of Csa6G067960 vs. Swiss-Prot
Match: AGP25_ARATH (Classical arabinogalactan protein 25 OS=Arabidopsis thaliana GN=AGP25 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-13
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 3   SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIP 62
           +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   
Sbjct: 2   AFSFLNKLLIIF----IFIFISLSSSSPTISLVQQLSPEIAPLLPSPGDALPSDDGSG-- 61

Query: 63  TIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNSLPCYSNWLLLLL 112
           TIPS+PSPP+PD  +   PD  A SPF  P   S +PP SLP     L+ L+
Sbjct: 62  TIPSSPSPPDPDTNDGSYPDPLAFSPFASPPVSSPSPPPSLPSAGVLLISLI 107

[Close]

BLAST of Csa6G067960 vs. TrEMBL
Match: A0A0A0KBF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067960 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.3e-66
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60
           MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFS 120
           PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFS
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFS 120

Query: 121 MHLH 125
           MHLH
Sbjct: 121 MHLH 124

[Close]

BLAST of Csa6G067960 vs. TrEMBL
Match: A0A061ENG2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021121 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-21
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 1   MASFWYCSAVIMVFMASPLLALPS------VP---------NPKPSSPFQELSPEIAPLL 60
           MASFW+    IM FMASPLL+L S      +P         +  P +PFQELSP+IAPL 
Sbjct: 1   MASFWFLLLHIMFFMASPLLSLASSQLSSDIPTVSASPVSMSDPPLAPFQELSPDIAPLF 60

Query: 61  PSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFG-LPG 93
           PS G  +P+ TGSS+PTIPS+PSPPNPDD  A GPDS+A  PFG LPG
Sbjct: 61  PSPGGVVPT-TGSSMPTIPSSPSPPNPDDVMAAGPDSAAFPPFGSLPG 107

[Close]

BLAST of Csa6G067960 vs. TrEMBL
Match: K7MAL5_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-18
Identity = 64/113 (56.64%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 10  VIMVFMASPLLA------LPSVPN------------PKPSS--PFQELSPEIAPLLPSTG 69
           +IM FM SPLL+      +P VP             P PSS  PFQELSP+IAPLLPS G
Sbjct: 13  IIMAFMPSPLLSSYSQEPIPKVPTLSSSPATLTDPPPSPSSLSPFQELSPDIAPLLPSPG 72

Query: 70  DKIPS-ATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP-GSFAPPNSL 101
             +P+ A GS IPTIPSNPSPPNPDD  A GP  SA SPFG P  S AP  SL
Sbjct: 73  GVLPTPAAGSDIPTIPSNPSPPNPDDIIAPGP-LSAFSPFGSPLSSNAPTTSL 124

[Close]

BLAST of Csa6G067960 vs. TrEMBL
Match: A0A0R0G9N0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G098700 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-18
Identity = 64/113 (56.64%), Postives = 70/113 (61.95%), Query Frame = 1


Query: 10  VIMVFMASPLLA------LPSVPN------------PKPSS--PFQELSPEIAPLLPSTG 69
           +IM FM SPLL+      +P VP             P PSS  PFQELSP+IAPLLPS G
Sbjct: 3   IIMAFMPSPLLSSYSQEPIPKVPTLSSSPATLTDPPPSPSSLSPFQELSPDIAPLLPSPG 62

Query: 70  DKIPS-ATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFGLP-GSFAPPNSL 101
             +P+ A GS IPTIPSNPSPPNPDD  A GP  SA SPFG P  S AP  SL
Sbjct: 63  GVLPTPAAGSDIPTIPSNPSPPNPDDIIAPGP-LSAFSPFGSPLSSNAPTTSL 114

[Close]

BLAST of Csa6G067960 vs. TrEMBL
Match: B9HY55_POPTR (Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0010s03290g PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.7e-18
Identity = 59/118 (50.00%), Postives = 70/118 (59.32%), Query Frame = 1


Query: 1   MASFWYCSAVIMVFMASPLLAL-----------------PSVPNPKPSSPFQELSPEIAP 60
           MASF +   +I+  M  PLL+                  P + NP P SP QELSP+IAP
Sbjct: 1   MASFCFFIVLIVPLMIFPLLSSSTQLNSKTSPYPISTSPPFLTNPPPPSPLQELSPDIAP 60

Query: 61  LLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFG-LPGSFAPPNSL 101
           LLPS G  +PS T SS+PTIPS PSPPNPD+  A GP +SA SP G LP S A P +L
Sbjct: 61  LLPSPGGVLPSPTVSSVPTIPSTPSPPNPDEVVAPGP-ASAFSPLGALPASSASPRNL 117

[Close]

BLAST of Csa6G067960 vs. TAIR10
Match: AT5G18690.1 (AT5G18690.1 arabinogalactan protein 25)

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 1


Query: 3   SFWYCSAVIMVFMASPLLALPSVPNPKPS-SPFQELSPEIAPLLPSTGDKIPSATGSSIP 62
           +F + + ++++F    +    S+ +  P+ S  Q+LSPEIAPLLPS GD +PS  GS   
Sbjct: 2   AFSFLNKLLIIF----IFIFISLSSSSPTISLVQQLSPEIAPLLPSPGDALPSDDGSG-- 61

Query: 63  TIPSNPSPPNPDDFEALGPDSSALSPFGLP--GSFAPPNSLPCYSNWLLLLL 112
           TIPS+PSPP+PD  +   PD  A SPF  P   S +PP SLP     L+ L+
Sbjct: 62  TIPSSPSPPDPDTNDGSYPDPLAFSPFASPPVSSPSPPPSLPSAGVLLISLI 107

[Close]

BLAST of Csa6G067960 vs. NCBI nr
Match: gi|778710996|ref|XP_011656664.1| (PREDICTED: classical arabinogalactan protein 25 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 4.7e-66
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60
           MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFS 120
           PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFS
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFS 120

Query: 121 MHLH 125
           MHLH
Sbjct: 121 MHLH 124

[Close]

BLAST of Csa6G067960 vs. NCBI nr
Match: gi|659117243|ref|XP_008458497.1| (PREDICTED: classical arabinogalactan protein 25 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 1.8e-65
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1


Query: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60
           MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLTFS 120
           PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALL FS
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPNSLPCYSNWLLLLLNGLALLAFS 120

Query: 121 MHLH 125
           MHLH
Sbjct: 121 MHLH 124

[Close]

BLAST of Csa6G067960 vs. NCBI nr
Match: gi|590660668|ref|XP_007035460.1| (Uncharacterized protein TCM_021121 [Theobroma cacao])

HSP 1 Score: 110.2 bits (274), Expect = 2.7e-21
Identity = 62/108 (57.41%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 1   MASFWYCSAVIMVFMASPLLALPS------VP---------NPKPSSPFQELSPEIAPLL 60
           MASFW+    IM FMASPLL+L S      +P         +  P +PFQELSP+IAPL 
Sbjct: 1   MASFWFLLLHIMFFMASPLLSLASSQLSSDIPTVSASPVSMSDPPLAPFQELSPDIAPLF 60

Query: 61  PSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFG-LPG 93
           PS G  +P+ TGSS+PTIPS+PSPPNPDD  A GPDS+A  PFG LPG
Sbjct: 61  PSPGGVVPT-TGSSMPTIPSSPSPPNPDDVMAAGPDSAAFPPFGSLPG 107

[Close]

BLAST of Csa6G067960 vs. NCBI nr
Match: gi|1009159634|ref|XP_015897918.1| (PREDICTED: classical arabinogalactan protein 26-like [Ziziphus jujuba])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 66/133 (49.62%), Postives = 82/133 (61.65%), Query Frame = 1


Query: 1   MASFWYCSAVIMVFMASPLLALPSV-PNPK------------------------PSSPFQ 60
           MASF     +IM+F+ASPLL+LPS  PNPK                        PSS +Q
Sbjct: 1   MASFCLHLLLIMIFLASPLLSLPSSQPNPKASSSSSNTISASPASALSSNPQPTPSSAYQ 60

Query: 61  ELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFG-LPGSF 108
           ELSP+I+PLLP +G  +P+  GSSIPTIPSN SPPNPDD  A GP  SAL+PFG +P S 
Sbjct: 61  ELSPDISPLLPKSGAVLPTPIGSSIPTIPSNLSPPNPDDLVASGP-FSALAPFGSMPISS 120

[Close]

BLAST of Csa6G067960 vs. NCBI nr
Match: gi|1009149765|ref|XP_015892654.1| (PREDICTED: classical arabinogalactan protein 26-like [Ziziphus jujuba])

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-19
Identity = 66/133 (49.62%), Postives = 82/133 (61.65%), Query Frame = 1


Query: 1   MASFWYCSAVIMVFMASPLLALPSV-PNPK------------------------PSSPFQ 60
           MASF     +IM+F+ASPLL+LPS  PNPK                        PSS +Q
Sbjct: 1   MASFCLHLLLIMIFLASPLLSLPSSQPNPKASSSSSNIISASPASALSSNPQPTPSSAYQ 60

Query: 61  ELSPEIAPLLPSTGDKIPSATGSSIPTIPSNPSPPNPDDFEALGPDSSALSPFG-LPGSF 108
           ELSP+I+PLLP +G  +P+  GSSIPTIPSN SPPNPDD  A GP  SAL+PFG +P S 
Sbjct: 61  ELSPDISPLLPKSGAVLPTPIGSSIPTIPSNLSPPNPDDLVASGP-FSALAPFGSMPISS 120

The following BLAST results are available for this feature:

BLAST of Csa6G067960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP25_ARATH	2.7e-13	42.86	Classical arabinogalactan protein 25 OS=Arabidopsis thaliana GN=AGP25 PE=3 SV=1	[more]

BLAST of Csa6G067960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBF8_CUCSA	3.3e-66	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067960 PE=4 SV=1	[more]
A0A061ENG2_THECC	1.9e-21	57.41	Uncharacterized protein OS=Theobroma cacao GN=TCM_021121 PE=4 SV=1	[more]
K7MAL5_SOYBN	3.4e-18	56.64	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0R0G9N0_SOYBN	3.4e-18	56.64	Uncharacterized protein OS=Glycine max GN=GLYMA_15G098700 PE=4 SV=1	[more]
B9HY55_POPTR	5.7e-18	50.00	Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0010s03290g PE=...	[more]

BLAST of Csa6G067960 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18690.1	1.5e-14	42.86	arabinogalactan protein 25	[more]

BLAST of Csa6G067960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778710996\|ref\|XP_011656664.1\|	4.7e-66	100.00	PREDICTED: classical arabinogalactan protein 25 [Cucumis sativus]	[more]
gi\|659117243\|ref\|XP_008458497.1\|	1.8e-65	99.19	PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]	[more]
gi\|590660668\|ref\|XP_007035460.1\|	2.7e-21	57.41	Uncharacterized protein TCM_021121 [Theobroma cacao]	[more]
gi\|1009159634\|ref\|XP_015897918.1\|	1.5e-19	49.62	PREDICTED: classical arabinogalactan protein 26-like [Ziziphus jujuba]	[more]
gi\|1009149765\|ref\|XP_015892654.1\|	1.5e-19	49.62	PREDICTED: classical arabinogalactan protein 26-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G067960.1	Csa6G067960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35725	FAMILY NOT NAMED	coord: 1..123 score: 1.2
None	No IPR available	PANTHER	PTHR35725:SF2	CLASSICAL ARABINOGALACTAN PROTEIN 25	coord: 1..123 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G067960	Cla009336	Watermelon (97103) v1	cuwmB545
Csa6G067960	MELO3C021367	Melon (DHL92) v3.5.1	cumeB427
Csa6G067960	ClCG06G005430	Watermelon (Charleston Gray)	cuwcgB481
Csa6G067960	Lsi09G013920	Bottle gourd (USVL1VR-Ls)	culsiB395
Csa6G067960	MELO3C021367.2	Melon (DHL92) v3.6.1	cumedB407
Csa6G067960	Cla97C06G114950	Watermelon (97103) v2	cuwmbB473
Csa6G067960	Bhi12G001561	Wax gourd	cuwgoB546
Csa6G067960	CSPI06G05370	Wild cucumber (PI 183967)	cpicuB314
Csa6G067960	Cucsa.363280	Cucumber (Gy14) v1	cgycuB511
Csa6G067960	CmaCh17G003040	Cucurbita maxima (Rimu)	cmacuB370
Csa6G067960	CmoCh08G011750	Cucurbita moschata (Rifu)	cmocuB881
Csa6G067960	CmoCh17G002940	Cucurbita moschata (Rifu)	cmocuB360
Csa6G067960	Cp4.1LG12g02530	Cucurbita pepo (Zucchini)	cpecuB144
Csa6G067960	Cp4.1LG17g00970	Cucurbita pepo (Zucchini)	cpecuB325
Csa6G067960	CsGy6G005340	Cucumber (Gy14) v2	cgybcuB282
Csa6G067960	Carg15956	Silver-seed gourd	carcuB0351
Csa6G067960	Carg05486	Silver-seed gourd	carcuB0074

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G067960	Melon (DHL92) v3.5.1	cumeB496
Csa6G067960	Watermelon (Charleston Gray)	cuwcgB472
Csa6G067960	Watermelon (97103) v1	cuwmB494
Csa6G067960	Cucurbita pepo (Zucchini)	cpecuB631
Csa6G067960	Bottle gourd (USVL1VR-Ls)	culsiB460
Csa6G067960	Cucumber (Gy14) v2	cgybcuB141
Csa6G067960	Melon (DHL92) v3.6.1	cumedB475
Csa6G067960	Silver-seed gourd	carcuB0634
Csa6G067960	Watermelon (97103) v2	cuwmbB461
Csa6G067960	Wax gourd	cuwgoB557
Csa6G067960	Cucumber (Chinese Long) v2	cucuB113
Csa6G067960	Cucumber (Gy14) v1	cgycuB375
Csa6G067960	Cucurbita maxima (Rimu)	cmacuB271
Csa6G067960	Cucurbita maxima (Rimu)	cmacuB896
Csa6G067960	Cucurbita moschata (Rifu)	cmocuB259