Carg15956 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15956
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	classical arabinogalactan protein 25
Location	Cucurbita_argyrosperma_scaffold_080 : 798657 .. 799034 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCTTTTGGTATTGTTCAGCACTCATTACGGCTTTCTTGGCCACACCTTTGCTTGCTTTACCATTTTTGACCTCCACCACTACCAGTTCTCCTTTCCAAGAACTCTCCCCTGAAATTGCTCCATTGCTGCCTTCGACAGGCGATCAGATTCCTTCTGCAACTGGTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATCCAGACGAGTTCGAAGCGCCTGCTCCTGATCCCTCTGCCCTTTCCCCATTCGGCCTGCCAGCTTCCTTCGCAGCGCCTAAGCCCCCCCTGCCTTGCTCTTCAAATGCGCTTCTTCTTCTATCAGCCTTATTAGCAGCACTACATGCCTTCTCTCTGCTCTTACATTGA

mRNA sequence

ATGGCCTGCTTTTGGTATTGTTCAGCACTCATTACGGCTTTCTTGGCCACACCTTTGCTTGCTTTACCATTTTTGACCTCCACCACTACCAGTTCTCCTTTCCAAGAACTCTCCCCTGAAATTGCTCCATTGCTGCCTTCGACAGGCGATCAGATTCCTTCTGCAACTGGTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATCCAGACGAGTTCGAAGCGCCTGCTCCTGATCCCTCTGCCCTTTCCCCATTCGGCCTGCCAGCTTCCTTCGCAGCGCCTAAGCCCCCCCTGCCTTGCTCTTCAAATGCGCTTCTTCTTCTATCAGCCTTATTAGCAGCACTACATGCCTTCTCTCTGCTCTTACATTGA

Coding sequence (CDS)

ATGGCCTGCTTTTGGTATTGTTCAGCACTCATTACGGCTTTCTTGGCCACACCTTTGCTTGCTTTACCATTTTTGACCTCCACCACTACCAGTTCTCCTTTCCAAGAACTCTCCCCTGAAATTGCTCCATTGCTGCCTTCGACAGGCGATCAGATTCCTTCTGCAACTGGTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATCCAGACGAGTTCGAAGCGCCTGCTCCTGATCCCTCTGCCCTTTCCCCATTCGGCCTGCCAGCTTCCTTCGCAGCGCCTAAGCCCCCCCTGCCTTGCTCTTCAAATGCGCTTCTTCTTCTATCAGCCTTATTAGCAGCACTACATGCCTTCTCTCTGCTCTTACATTGA

Protein sequence

MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPLPCSSNALLLLSALLAALHAFSLLLH

Homology

[Close]

BLAST of Carg15956 vs. NCBI nr
Match: XP_008458497.1 (PREDICTED: classical arabinogalactan protein 25 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 5.7e-23
Identity = 90/126 (71.43%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 1   MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SI 60
           MA FWYCSA+I  F+A+PLLALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG S 
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSX 60

Query: 61  PXXXXXXXXXXXDEFEAPAPDPSALSPFGLPASFAAPKPPLPCSSNALLLLSALLAALHA 120
            XXXXXXXXXXX  FEA  PD SALSPFGLP SFA P   LPC SN LLLL   LA L A
Sbjct: 61  XXXXXXXXXXXXXXFEALGPDSSALSPFGLPGSFAPPN-SLPCYSNWLLLLLNGLALL-A 120

Query: 121 FSLLLH 126
           FS+ LH
Sbjct: 121 FSMHLH 124

[Close]

BLAST of Carg15956 vs. NCBI nr
Match: XP_022138732.1 (classical arabinogalactan protein 25 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 5.7e-23
Identity = 95/145 (65.52%), Postives = 100/145 (68.97%), Query Frame = 0


Query: 1   MACFWYCSALITAFLATPLLALP-------------------FLT-STTTSSPFQELSPE 60
           MA FWYCSALI AF+A+ LLALP                   F T S    SPFQELSPE
Sbjct: 1   MASFWYCSALIMAFMASTLLALPSDSLHNPKSSTIISASPSLFTTNSPQPISPFQELSPE 60

Query: 61  IAPLLPSTGDQIPSATGSIPXXXXXXXXXXXDEFEAPAPDPSALSPFGLPASFAAPKPPL 120
           IAPLLPS G  IPSATGSI XXXXXXXXXXXDEFEAPAPDPSALSPFGLP SF AP   L
Sbjct: 61  IAPLLPSPGGNIPSATGSIXXXXXXXXXXXXDEFEAPAPDPSALSPFGLPGSF-APPTAL 120

Query: 121 PCSSNALLLLSALLAALHAFSLLLH 126
           P  SN+LLLL+   +AL  FSL LH
Sbjct: 121 PWYSNSLLLLAG--SALFLFSLPLH 142

[Close]

BLAST of Carg15956 vs. NCBI nr
Match: XP_011656664.1 (PREDICTED: classical arabinogalactan protein 25 [Cucumis sativus] >KGN46189.1 hypothetical protein Csa_6G067960 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.6e-22
Identity = 89/126 (70.63%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 1   MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SI 60
           MA FWYCSA+I  F+A+PLLALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG S 
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSX 60

Query: 61  PXXXXXXXXXXXDEFEAPAPDPSALSPFGLPASFAAPKPPLPCSSNALLLLSALLAALHA 120
            XXXXXXXXXXX  FEA  PD SALSPFGLP SFA P   LPC SN LLLL   LA L  
Sbjct: 61  XXXXXXXXXXXXXXFEALGPDSSALSPFGLPGSFAPPN-SLPCYSNWLLLLLNGLALL-T 120

Query: 121 FSLLLH 126
           FS+ LH
Sbjct: 121 FSMHLH 124

[Close]

BLAST of Carg15956 vs. NCBI nr
Match: XP_023547783.1 (classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.4 bits (220), Expect = 9.7e-15
Identity = 68/125 (54.40%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIP 60
           MA FWYC+A+I AF+A+PLLALP L +   SS FQE                        
Sbjct: 1   MASFWYCAAVIMAFMASPLLALPSLPNPKLSSSFQEXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXDEFEAPAPDPSALSPFGLPASFAAPKPPLPCSSNALLLLSALLAALHAF 120
           XXXX       DEFEAP PD SALSPFGLP SFAAPK PLP  SN+LLLL+AL  +LHAF
Sbjct: 61  XXXXNPSPPNPDEFEAPGPDSSALSPFGLPGSFAAPK-PLPPYSNSLLLLTAL--SLHAF 120

Query: 121 SLLLH 126
            L LH
Sbjct: 121 YLHLH 122

[Close]

BLAST of Carg15956 vs. NCBI nr
Match: XP_022958905.1 (classical arabinogalactan protein 25-like [Cucurbita moschata])

HSP 1 Score: 84.7 bits (208), Expect = 2.4e-13
Identity = 66/125 (52.80%), Postives = 74/125 (59.20%), Query Frame = 0


Query: 1   MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIP 60
           MA FWYC+A+I A +A+PLLALP L +   SS FQE                        
Sbjct: 1   MASFWYCAAVIMALMASPLLALPSLPNPKLSSSFQEXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXDEFEAPAPDPSALSPFGLPASFAAPKPPLPCSSNALLLLSALLAALHAF 120
           XXXX       DEFEAP PD SALSP GLP SFAAPK PLP  SN+LLLL+AL  +LHAF
Sbjct: 61  XXXXNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPK-PLPPYSNSLLLLTAL--SLHAF 120

Query: 121 SLLLH 126
            L LH
Sbjct: 121 YLHLH 122

[Close]

BLAST of Carg15956 vs. TAIR10
Match: AT5G18690.1 (arabinogalactan protein 25)

HSP 1 Score: 44.7 bits (104), Expect = 5.0e-05
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 35 QELSPEIAPLLPSTGDQIPS--ATGSIPXXXXXXXXXXXDEFEAPAPDPSALSPFGLP 91
          Q+LSPEIAPLLPS GD +PS   +G+IP       XXXXD  +   PDP A SPF  P
Sbjct: 31 QQLSPEIAPLLPSPGDALPSDDGSGTIP---SSPSXXXXDTNDGSYPDPLAFSPFASP 85

[Close]

BLAST of Carg15956 vs. Swiss-Prot
Match: sp|Q6NN00|AGP25_ARATH (Classical arabinogalactan protein 25 OS=Arabidopsis thaliana OX=3702 GN=AGP25 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 8.9e-04
Identity = 32/58 (55.17%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 35 QELSPEIAPLLPSTGDQIPS--ATGSIPXXXXXXXXXXXDEFEAPAPDPSALSPFGLP 91
          Q+LSPEIAPLLPS GD +PS   +G+IP       XXXXD  +   PDP A SPF  P
Sbjct: 31 QQLSPEIAPLLPSPGDALPSDDGSGTIP---SSPSXXXXDTNDGSYPDPLAFSPFASP 85

[Close]

BLAST of Carg15956 vs. TrEMBL
Match: tr|A0A1S3C8K2|A0A1S3C8K2_CUCME (classical arabinogalactan protein 25 OS=Cucumis melo OX=3656 GN=LOC103497889 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.7e-23
Identity = 90/126 (71.43%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 1   MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SI 60
           MA FWYCSA+I  F+A+PLLALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG S 
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSX 60

Query: 61  PXXXXXXXXXXXDEFEAPAPDPSALSPFGLPASFAAPKPPLPCSSNALLLLSALLAALHA 120
            XXXXXXXXXXX  FEA  PD SALSPFGLP SFA P   LPC SN LLLL   LA L A
Sbjct: 61  XXXXXXXXXXXXXXFEALGPDSSALSPFGLPGSFAPPN-SLPCYSNWLLLLLNGLALL-A 120

Query: 121 FSLLLH 126
           FS+ LH
Sbjct: 121 FSMHLH 124

[Close]

BLAST of Carg15956 vs. TrEMBL
Match: tr|A0A0A0KBF8|A0A0A0KBF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067960 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 89/126 (70.63%), Postives = 96/126 (76.19%), Query Frame = 0


Query: 1   MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SI 60
           MA FWYCSA+I  F+A+PLLALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG S 
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSX 60

Query: 61  PXXXXXXXXXXXDEFEAPAPDPSALSPFGLPASFAAPKPPLPCSSNALLLLSALLAALHA 120
            XXXXXXXXXXX  FEA  PD SALSPFGLP SFA P   LPC SN LLLL   LA L  
Sbjct: 61  XXXXXXXXXXXXXXFEALGPDSSALSPFGLPGSFAPPN-SLPCYSNWLLLLLNGLALL-T 120

Query: 121 FSLLLH 126
           FS+ LH
Sbjct: 121 FSMHLH 124

[Close]

BLAST of Carg15956 vs. TrEMBL
Match: tr|A0A2I4F326|A0A2I4F326_9ROSI (classical arabinogalactan protein 25 OS=Juglans regia OX=51240 GN=LOC108995041 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 59/114 (51.75%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 1   MACFWYCSALITAFLATPLLALPFLTSTTTS----------------SPFQELSPEIAPL 60
           MA FW+   LI AF+A+PLL+L     +  S                SPFQELSP+IAPL
Sbjct: 1   MASFWFHLLLIMAFMASPLLSLSSQLDSKASNISATPSFLANPLPPVSPFQELSPDIAPL 60

Query: 61  LPSTGDQIPSATGSIPXXXXXXXXXXXDEFEAPAPDPSALSPFG-LPASFAAPK 98
           LPS G  +P++TG   XXXXXXXXXXX    A A   SA SPFG LPAS  APK
Sbjct: 61  LPSPGGVVPTSTGXXXXXXXXXXXXXXXXVLAAAGPDSAFSPFGSLPASSTAPK 114

[Close]

BLAST of Carg15956 vs. TrEMBL
Match: tr|R0GQZ0|R0GQZ0_9BRAS (Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10002269mg PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.7e-04
Identity = 45/113 (39.82%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 10  LITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPS--ATGSIPXXXXXXX 69
           +I   L++P L+  FL S+ T SPFQ+LSPEIAPLLPS GD +PS    G+IP       
Sbjct: 12  IIFISLSSPCLSSNFLPSSPTISPFQQLSPEIAPLLPSPGDSLPSDDGGGTIPSSPSPPD 71

Query: 70  XXXXDEFEAPAPDPSALSPFGLP----ASFAAPKPPLPCSSNALLLLSALLAA 117
               D      PDP A +PF  P     +  +  PPL       ++LS+ L A
Sbjct: 72  PHTDD---GSFPDPLAFAPFASPPVSSPASQSSHPPLGVFLLLTVILSSALVA 121

The following BLAST results are available for this feature:

BLAST of Carg15956 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458497.1	5.7e-23	71.43	PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]	[more]
XP_022138732.1	5.7e-23	65.52	classical arabinogalactan protein 25 [Momordica charantia]	[more]
XP_011656664.1	1.6e-22	70.63	PREDICTED: classical arabinogalactan protein 25 [Cucumis sativus] >KGN46189.1 hy...	[more]
XP_023547783.1	9.7e-15	54.40	classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958905.1	2.4e-13	52.80	classical arabinogalactan protein 25-like [Cucurbita moschata]	[more]

BLAST of Carg15956 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18690.1	5.0e-05	55.17	arabinogalactan protein 25	[more]

BLAST of Carg15956 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NN00\|AGP25_ARATH	8.9e-04	55.17	Classical arabinogalactan protein 25 OS=Arabidopsis thaliana OX=3702 GN=AGP25 PE...	[more]

BLAST of Carg15956 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C8K2\|A0A1S3C8K2_CUCME	3.7e-23	71.43	classical arabinogalactan protein 25 OS=Cucumis melo OX=3656 GN=LOC103497889 PE=...	[more]
tr\|A0A0A0KBF8\|A0A0A0KBF8_CUCSA	1.1e-22	70.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067960 PE=4 SV=1	[more]
tr\|A0A2I4F326\|A0A2I4F326_9ROSI	2.4e-06	51.75	classical arabinogalactan protein 25 OS=Juglans regia OX=51240 GN=LOC108995041 P...	[more]
tr\|R0GQZ0\|R0GQZ0_9BRAS	8.7e-04	39.82	Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10002269mg PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039346	AGP25/26

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15956-RA	Carg15956-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..83
None	No IPR available	PANTHER	PTHR35725:SF2	CLASSICAL ARABINOGALACTAN PROTEIN 25	coord: 23..112
IPR039346	Classical arabinogalactan protein 25/26	PANTHER	PTHR35725	FAMILY NOT NAMED	coord: 23..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15956	Cla009336	Watermelon (97103) v1	carwmB0317
Carg15956	Csa6G067960	Cucumber (Chinese Long) v2	carcuB0351
Carg15956	MELO3C021367	Melon (DHL92) v3.5.1	carmeB0327
Carg15956	ClCG06G005430	Watermelon (Charleston Gray)	carwcgB0318
Carg15956	CSPI06G05370	Wild cucumber (PI 183967)	carcpiB0356
Carg15956	Cucsa.363280	Cucumber (Gy14) v1	carcgyB0384
Carg15956	CmaCh17G003040	Cucurbita maxima (Rimu)	carcmaB0455
Carg15956	CmoCh17G002940	Cucurbita moschata (Rifu)	carcmoB0446
Carg15956	CmoCh08G011750	Cucurbita moschata (Rifu)	carcmoB0449
Carg15956	Lsi09G013920	Bottle gourd (USVL1VR-Ls)	carlsiB296
Carg15956	Cp4.1LG17g00970	Cucurbita pepo (Zucchini)	carcpeB0453
Carg15956	Cp4.1LG12g02530	Cucurbita pepo (Zucchini)	carcpeB0450
Carg15956	CsGy6G005340	Cucumber (Gy14) v2	carcgybB0334
Carg15956	MELO3C021367.2	Melon (DHL92) v3.6.1	carmedB0336
Carg15956	CsaV3_6G005680	Cucumber (Chinese Long) v3	carcucB0356
Carg15956	Cla97C06G114950	Watermelon (97103) v2	carwmbB0334
Carg15956	Bhi12G001561	Wax gourd	carwgoB0408

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15956	Carg05486	Silver-seed gourd	carcarB080

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15956	Cucurbita pepo (Zucchini)	carcpeB0454
Carg15956	Cucurbita pepo (Zucchini)	carcpeB0456
Carg15956	Wild cucumber (PI 183967)	carcpiB0355
Carg15956	Cucumber (Chinese Long) v2	carcuB0350
Carg15956	Cucumber (Chinese Long) v3	carcucB0355
Carg15956	Bottle gourd (USVL1VR-Ls)	carlsiB298
Carg15956	Melon (DHL92) v3.5.1	carmeB0332
Carg15956	Melon (DHL92) v3.6.1	carmedB0340
Carg15956	Watermelon (Charleston Gray)	carwcgB0317
Carg15956	Watermelon (97103) v1	carwmB0316
Carg15956	Watermelon (97103) v2	carwmbB0333
Carg15956	Wax gourd	carwgoB0411
Carg15956	Silver-seed gourd	carcarB347
Carg15956	Cucumber (Gy14) v2	carcgybB0333
Carg15956	Cucumber (Gy14) v1	carcgyB0383
Carg15956	Cucurbita maxima (Rimu)	carcmaB0453
Carg15956	Cucurbita maxima (Rimu)	carcmaB0457
Carg15956	Cucurbita maxima (Rimu)	carcmaB0458
Carg15956	Cucurbita moschata (Rifu)	carcmoB0444
Carg15956	Cucurbita moschata (Rifu)	carcmoB0448