CmoCh08G011750 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G011750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr08 : 7476079 .. 7476462 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATGGCCTGCTTTTGGTATTGTTCAGCACTCATTACGGCTTTCATGGCCACACCTTCGCTTGCTTTACCATTTTTGACCTCCACCACTACCAGTTCCCCTTTTCAAGAACTCTCCCCTGAAATTGCTCCACTGCTGCCTTCGACAGGCGATCAGATTCCTTCTGCAACTGGTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATCCAGACGAGTTCGAAGCGCCTGCTCCTGATCCCTCTGCCCTTTCCCCATTCGGCCTGCCAGCTTCCTTCGCAGCGCCTAAGCCCCACCTGCCTTGCTCTTCAAATGCGCTTCTTCTTCTATCAACCTTATTAGCAGCACTACATGCCTTCTTTCTGCTCTTACATTGA

mRNA sequence

ATGAGAATGGCCTGCTTTTGGTATTGTTCAGCACTCATTACGGCTTTCATGGCCACACCTTCGCTTGCTTTACCATTTTTGACCTCCACCACTACCAGTTCCCCTTTTCAAGAACTCTCCCCTGAAATTGCTCCACTGCTGCCTTCGACAGGCGATCAGATTCCTTCTGCAACTGGTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATCCAGACGAGTTCGAAGCGCCTGCTCCTGATCCCTCTGCCCTTTCCCCATTCGGCCTGCCAGCTTCCTTCGCAGCGCCTAAGCCCCACCTGCCTTGCTCTTCAAATGCGCTTCTTCTTCTATCAACCTTATTAGCAGCACTACATGCCTTCTTTCTGCTCTTACATTGA

Coding sequence (CDS)

ATGAGAATGGCCTGCTTTTGGTATTGTTCAGCACTCATTACGGCTTTCATGGCCACACCTTCGCTTGCTTTACCATTTTTGACCTCCACCACTACCAGTTCCCCTTTTCAAGAACTCTCCCCTGAAATTGCTCCACTGCTGCCTTCGACAGGCGATCAGATTCCTTCTGCAACTGGTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATCCAGACGAGTTCGAAGCGCCTGCTCCTGATCCCTCTGCCCTTTCCCCATTCGGCCTGCCAGCTTCCTTCGCAGCGCCTAAGCCCCACCTGCCTTGCTCTTCAAATGCGCTTCTTCTTCTATCAACCTTATTAGCAGCACTACATGCCTTCTTTCTGCTCTTACATTGA

Homology

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BLAST of CmoCh08G011750 vs. Swiss-Prot
Match: AGP25_ARATH (Classical arabinogalactan protein 25 OS=Arabidopsis thaliana GN=AGP25 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 28  TSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALS 87
           +S+ T S  Q+LSPEIAPLLPS GD +PS  GS  TIPS+PSPP+PD  +   PDP A S
Sbjct: 22  SSSPTISLVQQLSPEIAPLLPSPGDALPSDDGS-GTIPSSPSPPDPDTNDGSYPDPLAFS 81

Query: 88  PFGL-PASFAAPKPHLPCSSNALLLLSTLLAALHAFFLLL 127
           PF   P S  +P P LP  S  +LL+S ++++  A FL L
Sbjct: 82  PFASPPVSSPSPPPSLP--SAGVLLISLIISS--ASFLAL 116

[Close]

BLAST of CmoCh08G011750 vs. TrEMBL
Match: A0A0A0KBF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067960 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 5.4e-32
Identity = 91/126 (72.22%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   MACFWYCSALITAFMATPSLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SI 62
           MA FWYCSA+I  FMA+P LALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG SI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 63  PTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPHLPCSSNALLLLSTLLAALHA 122
           PTIPSNPSPPNPD+FEA  PD SALSPFGLP SFA P   LPC SN LLLL   LA L  
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPN-SLPCYSNWLLLLLNGLALL-T 120

Query: 123 FFLLLH 128
           F + LH
Sbjct: 121 FSMHLH 124

[Close]

BLAST of CmoCh08G011750 vs. TrEMBL
Match: B9HY55_POPTR (Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0010s03290g PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-12
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 21  SLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSAT-GSIPTIPSNPSPPNPDEFEAP 80
           S + PFLT+    SP QELSP+IAPLLPS G  +PS T  S+PTIPS PSPPNPDE  AP
Sbjct: 36  STSPPFLTNPPPPSPLQELSPDIAPLLPSPGGVLPSPTVSSVPTIPSTPSPPNPDEVVAP 95

Query: 81  APDPSALSPFG-LPASFAAPK 100
            P  SA SP G LPAS A+P+
Sbjct: 96  GP-ASAFSPLGALPASSASPR 115

[Close]

BLAST of CmoCh08G011750 vs. TrEMBL
Match: A0A067KUY4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02029 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-11
Identity = 54/94 (57.45%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 22  LALPFLTSTT---------------TSSPFQELSPEIAPLLPSTGDQIPS-ATGSIPTIP 81
           +  PFL+S+T               T+SPFQELSPEIAPLLPS G  +PS A  S+PTIP
Sbjct: 16  IIFPFLSSSTRLNSLQASSTIPTSLTNSPFQELSPEIAPLLPSPGGVLPSPAISSLPTIP 75

Query: 82  SNPSPPNPDEFEAPAPDPSALSPF-GLPASFAAP 99
           S PSPPNPD   AP P  SALSP   LPAS AAP
Sbjct: 76  STPSPPNPDALPAPGPG-SALSPLASLPASSAAP 108

[Close]

BLAST of CmoCh08G011750 vs. TrEMBL
Match: B9HM75_POPTR (Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0008s20030g PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.0e-11
Identity = 58/119 (48.74%), Postives = 68/119 (57.14%), Query Frame = 1


Query: 3   MACFWYCSALITAFMATPS--------------------LALPFLTSTTTSSPFQELSPE 62
           MA FW+ +ALI   +  PS                     +  FLT++    PFQELSP+
Sbjct: 1   MASFWFLTALIVPLVIFPSPSSSSSSTQLNSKTSPYPISTSPAFLTNSPPIPPFQELSPD 60

Query: 63  IAPLLPSTGDQIPSAT-GSIPTIPSNPSPPNPDEFEAPAPDPSALSPFG-LPASFAAPK 100
           IAPLLPS G  +PS T  S+PTIPS PSPPNPDE  A  PD SA SP G L AS AAP+
Sbjct: 61  IAPLLPSPGGVLPSPTVSSVPTIPSTPSPPNPDEVVASGPD-SAFSPLGALLASSAAPR 118

[Close]

BLAST of CmoCh08G011750 vs. TrEMBL
Match: A0A061ENG2_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021121 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.0e-11
Identity = 49/109 (44.95%), Postives = 61/109 (55.96%), Query Frame = 1


Query: 3   MACFWYCSALITAFMATPSLAL---------------PFLTSTTTSSPFQELSPEIAPLL 62
           MA FW+    I  FMA+P L+L               P   S    +PFQELSP+IAPL 
Sbjct: 1   MASFWFLLLHIMFFMASPLLSLASSQLSSDIPTVSASPVSMSDPPLAPFQELSPDIAPLF 60

Query: 63  PSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFA 97
           PS G  +P+   S+PTIPS+PSPPNPD+  A  PD +A  PFG    F+
Sbjct: 61  PSPGGVVPTTGSSMPTIPSSPSPPNPDDVMAAGPDSAAFPPFGSLPGFS 109

[Close]

BLAST of CmoCh08G011750 vs. TAIR10
Match: AT5G18690.1 (AT5G18690.1 arabinogalactan protein 25)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 52/100 (52.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 28  TSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALS 87
           +S+ T S  Q+LSPEIAPLLPS GD +PS  GS  TIPS+PSPP+PD  +   PDP A S
Sbjct: 22  SSSPTISLVQQLSPEIAPLLPSPGDALPSDDGS-GTIPSSPSPPDPDTNDGSYPDPLAFS 81

Query: 88  PFGL-PASFAAPKPHLPCSSNALLLLSTLLAALHAFFLLL 127
           PF   P S  +P P LP  S  +LL+S ++++  A FL L
Sbjct: 82  PFASPPVSSPSPPPSLP--SAGVLLISLIISS--ASFLAL 116

[Close]

BLAST of CmoCh08G011750 vs. NCBI nr
Match: gi|659117243|ref|XP_008458497.1| (PREDICTED: classical arabinogalactan protein 25 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 2.7e-32
Identity = 92/126 (73.02%), Postives = 99/126 (78.57%), Query Frame = 1


Query: 3   MACFWYCSALITAFMATPSLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SI 62
           MA FWYCSA+I  FMA+P LALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG SI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 63  PTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPHLPCSSNALLLLSTLLAALHA 122
           PTIPSNPSPPNPD+FEA  PD SALSPFGLP SFA P   LPC SN LLLL   LA L A
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPN-SLPCYSNWLLLLLNGLALL-A 120

Query: 123 FFLLLH 128
           F + LH
Sbjct: 121 FSMHLH 124

[Close]

BLAST of CmoCh08G011750 vs. NCBI nr
Match: gi|778710996|ref|XP_011656664.1| (PREDICTED: classical arabinogalactan protein 25 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 7.8e-32
Identity = 91/126 (72.22%), Postives = 98/126 (77.78%), Query Frame = 1


Query: 3   MACFWYCSALITAFMATPSLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SI 62
           MA FWYCSA+I  FMA+P LALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG SI
Sbjct: 1   MASFWYCSAVIMVFMASPLLALPSVPNPKPSSPFQELSPEIAPLLPSTGDKIPSATGSSI 60

Query: 63  PTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPHLPCSSNALLLLSTLLAALHA 122
           PTIPSNPSPPNPD+FEA  PD SALSPFGLP SFA P   LPC SN LLLL   LA L  
Sbjct: 61  PTIPSNPSPPNPDDFEALGPDSSALSPFGLPGSFAPPN-SLPCYSNWLLLLLNGLALL-T 120

Query: 123 FFLLLH 128
           F + LH
Sbjct: 121 FSMHLH 124

[Close]

BLAST of CmoCh08G011750 vs. NCBI nr
Match: gi|743872811|ref|XP_011034236.1| (PREDICTED: classical arabinogalactan protein 27 [Populus euphratica])

HSP 1 Score: 79.3 bits (194), Expect = 5.2e-12
Identity = 58/115 (50.43%), Postives = 68/115 (59.13%), Query Frame = 1


Query: 3   MACFWYCSALITAFMATP---------SLALPFLTSTTTS--------SPFQELSPEIAP 62
           MA FW+ + LI   +  P         S   P+ TST+ +         PFQELSP+IAP
Sbjct: 1   MASFWFLTVLIVPLVIFPLPSSSTQLNSKTSPYPTSTSPAFLTNFPPIPPFQELSPDIAP 60

Query: 63  LLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFG-LPASFAAPK 100
           LLPS G  +PS T S+PTIPS PSPPNPDE  A  PD SA SP G L AS AAP+
Sbjct: 61  LLPSPGGVLPSPTSSVPTIPSTPSPPNPDEVVASGPD-SAFSPLGALLASSAAPR 114

[Close]

BLAST of CmoCh08G011750 vs. NCBI nr
Match: gi|224107183|ref|XP_002314400.1| (hydroxyproline-rich glycoprotein [Populus trichocarpa])

HSP 1 Score: 79.0 bits (193), Expect = 6.8e-12
Identity = 51/81 (62.96%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 21  SLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSAT-GSIPTIPSNPSPPNPDEFEAP 80
           S + PFLT+    SP QELSP+IAPLLPS G  +PS T  S+PTIPS PSPPNPDE  AP
Sbjct: 36  STSPPFLTNPPPPSPLQELSPDIAPLLPSPGGVLPSPTVSSVPTIPSTPSPPNPDEVVAP 95

Query: 81  APDPSALSPFG-LPASFAAPK 100
            P  SA SP G LPAS A+P+
Sbjct: 96  GP-ASAFSPLGALPASSASPR 115

[Close]

BLAST of CmoCh08G011750 vs. NCBI nr
Match: gi|643733084|gb|KDP40031.1| (hypothetical protein JCGZ_02029 [Jatropha curcas])

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-11
Identity = 54/94 (57.45%), Postives = 60/94 (63.83%), Query Frame = 1


Query: 22  LALPFLTSTT---------------TSSPFQELSPEIAPLLPSTGDQIPS-ATGSIPTIP 81
           +  PFL+S+T               T+SPFQELSPEIAPLLPS G  +PS A  S+PTIP
Sbjct: 16  IIFPFLSSSTRLNSLQASSTIPTSLTNSPFQELSPEIAPLLPSPGGVLPSPAISSLPTIP 75

Query: 82  SNPSPPNPDEFEAPAPDPSALSPF-GLPASFAAP 99
           S PSPPNPD   AP P  SALSP   LPAS AAP
Sbjct: 76  STPSPPNPDALPAPGPG-SALSPLASLPASSAAP 108

The following BLAST results are available for this feature:

BLAST of CmoCh08G011750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP25_ARATH	2.2e-10	52.00	Classical arabinogalactan protein 25 OS=Arabidopsis thaliana GN=AGP25 PE=3 SV=1	[more]

BLAST of CmoCh08G011750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBF8_CUCSA	5.4e-32	72.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G067960 PE=4 SV=1	[more]
B9HY55_POPTR	4.8e-12	62.96	Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0010s03290g PE=...	[more]
A0A067KUY4_JATCU	3.1e-11	57.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02029 PE=4 SV=1	[more]
B9HM75_POPTR	4.0e-11	48.74	Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0008s20030g PE=...	[more]
A0A061ENG2_THECC	9.0e-11	44.95	Uncharacterized protein OS=Theobroma cacao GN=TCM_021121 PE=4 SV=1	[more]

BLAST of CmoCh08G011750 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18690.1	1.2e-11	52.00	arabinogalactan protein 25	[more]

BLAST of CmoCh08G011750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117243\|ref\|XP_008458497.1\|	2.7e-32	73.02	PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]	[more]
gi\|778710996\|ref\|XP_011656664.1\|	7.8e-32	72.22	PREDICTED: classical arabinogalactan protein 25 [Cucumis sativus]	[more]
gi\|743872811\|ref\|XP_011034236.1\|	5.2e-12	50.43	PREDICTED: classical arabinogalactan protein 27 [Populus euphratica]	[more]
gi\|224107183\|ref\|XP_002314400.1\|	6.8e-12	62.96	hydroxyproline-rich glycoprotein [Populus trichocarpa]	[more]
gi\|643733084\|gb\|KDP40031.1\|	4.4e-11	57.45	hypothetical protein JCGZ_02029 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G011750.1	CmoCh08G011750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35725	FAMILY NOT NAMED	coord: 29..126 score: 1.7
None	No IPR available	PANTHER	PTHR35725:SF2	CLASSICAL ARABINOGALACTAN PROTEIN 25	coord: 29..126 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G011750	Cucsa.363280	Cucumber (Gy14) v1	cgycmoB1014
CmoCh08G011750	CmaCh17G003040	Cucurbita maxima (Rimu)	cmacmoB365
CmoCh08G011750	Cla009336	Watermelon (97103) v1	cmowmB867
CmoCh08G011750	Csa6G067960	Cucumber (Chinese Long) v2	cmocuB881
CmoCh08G011750	MELO3C021367	Melon (DHL92) v3.5.1	cmomeB800
CmoCh08G011750	ClCG06G005430	Watermelon (Charleston Gray)	cmowcgB799
CmoCh08G011750	CSPI06G05370	Wild cucumber (PI 183967)	cmocpiB894
CmoCh08G011750	Lsi09G013920	Bottle gourd (USVL1VR-Ls)	cmolsiB797
CmoCh08G011750	Cp4.1LG12g02530	Cucurbita pepo (Zucchini)	cmocpeB833
CmoCh08G011750	Cp4.1LG17g00970	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G011750	MELO3C021367.2	Melon (DHL92) v3.6.1	cmomedB903
CmoCh08G011750	CsaV3_6G005680	Cucumber (Chinese Long) v3	cmocucB1048
CmoCh08G011750	Cla97C06G114950	Watermelon (97103) v2	cmowmbB896
CmoCh08G011750	Bhi12G001561	Wax gourd	cmowgoB1090
CmoCh08G011750	CsGy6G005340	Cucumber (Gy14) v2	cgybcmoB847
CmoCh08G011750	Carg15956	Silver-seed gourd	carcmoB0449
CmoCh08G011750	Carg05486	Silver-seed gourd	carcmoB0104

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G011750	CmoCh17G002940	Cucurbita moschata (Rifu)	cmocmoB310

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G011750	Wax gourd	cmowgoB1104
CmoCh08G011750	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh08G011750	Cucurbita moschata (Rifu)	cmocmoB329
CmoCh08G011750	Cucurbita moschata (Rifu)	cmocmoB484
CmoCh08G011750	Cucumber (Gy14) v1	cgycmoB0720
CmoCh08G011750	Cucurbita maxima (Rimu)	cmacmoB279
CmoCh08G011750	Cucurbita maxima (Rimu)	cmacmoB383
CmoCh08G011750	Cucurbita maxima (Rimu)	cmacmoB837
CmoCh08G011750	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G011750	Wild cucumber (PI 183967)	cmocpiB883
CmoCh08G011750	Cucumber (Chinese Long) v2	cmocuB872
CmoCh08G011750	Melon (DHL92) v3.5.1	cmomeB832
CmoCh08G011750	Watermelon (Charleston Gray)	cmowcgB792
CmoCh08G011750	Watermelon (97103) v1	cmowmB848
CmoCh08G011750	Watermelon (97103) v1	cmowmB856
CmoCh08G011750	Cucurbita pepo (Zucchini)	cmocpeB862
CmoCh08G011750	Cucurbita pepo (Zucchini)	cmocpeB866
CmoCh08G011750	Bottle gourd (USVL1VR-Ls)	cmolsiB819
CmoCh08G011750	Cucumber (Gy14) v2	cgybcmoB421
CmoCh08G011750	Melon (DHL92) v3.6.1	cmomedB940
CmoCh08G011750	Silver-seed gourd	carcmoB0826
CmoCh08G011750	Silver-seed gourd	carcmoB1126
CmoCh08G011750	Cucumber (Chinese Long) v3	cmocucB1032
CmoCh08G011750	Watermelon (97103) v2	cmowmbB887
CmoCh08G011750	Watermelon (97103) v2	cmowmbB921