Csa6G016910 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G016910
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 1878523 .. 1879014 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATCACAAACATATTTTAAATATAATTATATGATGAAAGAGTGATAACACTCTAAGCTAAAAACAAATTACAATAATTTAATTATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTAGGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTTTTTTTTTGCCTGTGGCTGCCTCCCATGGTGTGTAGAGATCAAGAGAAGTAATAAGATGGAAAATGAGTTCAATTGTGAGTGTGCTTGGGTTT

mRNA sequence

ATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTAGGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTTTTTTTTTGCCTGTGGCTGCCTCCCATGGTGTGTAG

Coding sequence (CDS)

ATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTAGGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTTTTTTTTTGCCTGTGGCTGCCTCCCATGGTGTGTAG

Protein sequence

METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTVAFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV*
Homology
[Close]
BLAST of Csa6G016910 vs. TrEMBL
Match: A0A0A0KBW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016910 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60
           METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV
Sbjct: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60

Query: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 117
           AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV
Sbjct: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 116

[Close]
BLAST of Csa6G016910 vs. NCBI nr
Match: gi|700190668|gb|KGN45872.1| (hypothetical protein Csa_6G016910 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60
           METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV
Sbjct: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60

Query: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 117
           AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV
Sbjct: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 116

The following BLAST results are available for this feature:
BLAST of Csa6G016910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBW6_CUCSA1.3e-59100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016910 PE=4 SV=1[more]
BLAST of Csa6G016910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190668|gb|KGN45872.1|1.8e-59100.00hypothetical protein Csa_6G016910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU112353cucumber EST collection version 3.0transcribed_cluster
CU149044cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G016910.1Csa6G016910.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU112353CU112353transcribed_cluster
CU149044CU149044transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G016910ClCG08G002350Watermelon (Charleston Gray)cuwcgB500
Csa6G016910CSPI06G02480Wild cucumber (PI 183967)cpicuB314
Csa6G016910CsGy6G002530Cucumber (Gy14) v2cgybcuB282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G016910Cucumber (Gy14) v1cgycuB511
Csa6G016910Cucurbita maxima (Rimu)cmacuB032
Csa6G016910Cucurbita maxima (Rimu)cmacuB485
Csa6G016910Cucurbita moschata (Rifu)cmocuB022
Csa6G016910Cucurbita moschata (Rifu)cmocuB473
Csa6G016910Melon (DHL92) v3.5.1cumeB415
Csa6G016910Watermelon (97103) v1cuwmB475
Csa6G016910Cucurbita pepo (Zucchini)cpecuB584
Csa6G016910Bottle gourd (USVL1VR-Ls)culsiB471
Csa6G016910Melon (DHL92) v3.6.1cumedB455
Csa6G016910Watermelon (97103) v2cuwmbB490
Csa6G016910Wax gourdcuwgoB589