Csa6G016910.1 (mRNA) Cucumber (Chinese Long) v2

Overview
NameCsa6G016910.1
TypemRNA
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 1878523 .. 1879014 (+)
Sequence length351
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATCACAAACATATTTTAAATATAATTATATGATGAAAGAGTGATAACACTCTAAGCTAAAAACAAATTACAATAATTTAATTATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTAGGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTTTTTTTTTGCCTGTGGCTGCCTCCCATGGTGTGTAGAGATCAAGAGAAGTAATAAGATGGAAAATGAGTTCAATTGTGAGTGTGCTTGGGTTT

mRNA sequence

ATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTAGGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTTTTTTTTTGCCTGTGGCTGCCTCCCATGGTGTGTAG

Coding sequence (CDS)

ATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTAGGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTTTTTTTTTGCCTGTGGCTGCCTCCCATGGTGTGTAG

Protein sequence

METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTVAFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV*
Homology
[Close]
BLAST of Csa6G016910.1 vs. TrEMBL
Match: A0A0A0KBW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016910 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60
           METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV
Sbjct: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60

Query: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 117
           AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV
Sbjct: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 116

[Close]
BLAST of Csa6G016910.1 vs. NCBI nr
Match: gi|700190668|gb|KGN45872.1| (hypothetical protein Csa_6G016910 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 1.8e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 

Query: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60
           METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV
Sbjct: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60

Query: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 117
           AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV
Sbjct: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 116

The following BLAST results are available for this feature:
BLAST of Csa6G016910.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBW6_CUCSA1.3e-59100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016910 PE=4 SV=1[more]
BLAST of Csa6G016910.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190668|gb|KGN45872.1|1.8e-59100.00hypothetical protein Csa_6G016910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csa6G016910Csa6G016910gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csa6G016910.1Csa6G016910.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G016910.1.utr5p1Csa6G016910.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G016910.1.cds1Csa6G016910.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csa6G016910.1.utr3p1Csa6G016910.1.utr3p1three_prime_UTR