CSPI06G02480 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G02480
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 1891118 .. 1891609 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATCACAAACATATTTTAAATATAATTATCTGATGAAAGAGTGATAACACTCTAAGCTAAAAACAAATTACAATAATTTAATTATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTACGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTCTTTTTTTGCCTGTGGTTGCCTCCCATGGTGTGTAGAGATCAAGAGAAGTAATAAGATGGAAAATGAGTTCAATTGTGAGTGTGCTTGGGTTT

mRNA sequence

ATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTACGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTCTTTTTTTGCCTGTGGTTGCCTCCCATGGTGTGTAG

Coding sequence (CDS)

ATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTACGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTCTTTTTTTGCCTGTGGTTGCCTCCCATGGTGTGTAG
Homology
[Close]
BLAST of CSPI06G02480 vs. TrEMBL
Match: A0A0A0KBW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016910 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.4e-58
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 1 

Query: 1   METKIKKLRKNKYNFLHIGITSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60
           METKIKKLRKNKYNFLHIGI SIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV
Sbjct: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60

Query: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSLFLPVVASHGV 117
           AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMS FLPV ASHGV
Sbjct: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 116

[Close]
BLAST of CSPI06G02480 vs. NCBI nr
Match: gi|700190668|gb|KGN45872.1| (hypothetical protein Csa_6G016910 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.4e-58
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 1 

Query: 1   METKIKKLRKNKYNFLHIGITSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60
           METKIKKLRKNKYNFLHIGI SIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV
Sbjct: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60

Query: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSLFLPVVASHGV 117
           AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMS FLPV ASHGV
Sbjct: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 116

The following BLAST results are available for this feature:
BLAST of CSPI06G02480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G02480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBW6_CUCSA2.4e-5897.41Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016910 PE=4 SV=1[more]
BLAST of CSPI06G02480 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G02480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190668|gb|KGN45872.1|3.4e-5897.41hypothetical protein Csa_6G016910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G02480.1CSPI06G02480.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G02480Csa6G016910Cucumber (Chinese Long) v2cpicuB314
CSPI06G02480ClCG08G002350Watermelon (Charleston Gray)cpiwcgB526
CSPI06G02480CsGy6G002530Cucumber (Gy14) v2cgybcpiB288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G02480Cucumber (Chinese Long) v3cpicucB364
CSPI06G02480Watermelon (97103) v2cpiwmbB516
CSPI06G02480Wax gourdcpiwgoB594
CSPI06G02480Cucumber (Gy14) v1cgycpiB540
CSPI06G02480Cucurbita maxima (Rimu)cmacpiB033
CSPI06G02480Cucurbita maxima (Rimu)cmacpiB488
CSPI06G02480Cucurbita moschata (Rifu)cmocpiB023
CSPI06G02480Cucurbita moschata (Rifu)cmocpiB477
CSPI06G02480Melon (DHL92) v3.5.1cpimeB468
CSPI06G02480Watermelon (97103) v1cpiwmB490
CSPI06G02480Cucurbita pepo (Zucchini)cpecpiB585
CSPI06G02480Bottle gourd (USVL1VR-Ls)cpilsiB479
CSPI06G02480Melon (DHL92) v3.6.1cpimedB464