CSPI06G02480.1 (mRNA) Wild cucumber (PI 183967)

Overview
NameCSPI06G02480.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 1891118 .. 1891609 (+)
Sequence length351
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATCACAAACATATTTTAAATATAATTATCTGATGAAAGAGTGATAACACTCTAAGCTAAAAACAAATTACAATAATTTAATTATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTACGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTCTTTTTTTGCCTGTGGTTGCCTCCCATGGTGTGTAGAGATCAAGAGAAGTAATAAGATGGAAAATGAGTTCAATTGTGAGTGTGCTTGGGTTT

mRNA sequence

ATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTACGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTCTTTTTTTGCCTGTGGTTGCCTCCCATGGTGTGTAG

Coding sequence (CDS)

ATGGAAACAAAAATTAAAAAACTAAGAAAAAACAAATACAACTTTCTACACATTGGAATTACGTCCATTGGGATGAATAGTGACAGTTTGACGCTCAGTTTCGAAGACACGATTTTTATAAATCCTATCGATGTAATCTTTGGCCTTTCTATCGATCCCCGGCTCCGCAACCCAACGGTAGCCTTTGTCCTCATCGCTTGGCCACACCTTGCTCGAGCTTGGCACATCCTCCCAATTGGTACCATGCTCATAAACATCTCCTTTCCTACCTCTTTTGGATTTGAAAAAGCTAAAGATGGAGAAGGAAGAATGAGTCTTTTTTTGCCTGTGGTTGCCTCCCATGGTGTGTAG
Homology
[Close]
BLAST of CSPI06G02480.1 vs. TrEMBL
Match: A0A0A0KBW6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016910 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.4e-58
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 1 

Query: 1   METKIKKLRKNKYNFLHIGITSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60
           METKIKKLRKNKYNFLHIGI SIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV
Sbjct: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60

Query: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSLFLPVVASHGV 117
           AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMS FLPV ASHGV
Sbjct: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 116

[Close]
BLAST of CSPI06G02480.1 vs. NCBI nr
Match: gi|700190668|gb|KGN45872.1| (hypothetical protein Csa_6G016910 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 3.4e-58
Identity = 113/116 (97.41%), Postives = 113/116 (97.41%), Query Frame = 1 

Query: 1   METKIKKLRKNKYNFLHIGITSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60
           METKIKKLRKNKYNFLHIGI SIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV
Sbjct: 1   METKIKKLRKNKYNFLHIGIRSIGMNSDSLTLSFEDTIFINPIDVIFGLSIDPRLRNPTV 60

Query: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSLFLPVVASHGV 117
           AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMS FLPV ASHGV
Sbjct: 61  AFVLIAWPHLARAWHILPIGTMLINISFPTSFGFEKAKDGEGRMSFFLPVAASHGV 116

The following BLAST results are available for this feature:
BLAST of CSPI06G02480.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G02480.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBW6_CUCSA2.4e-5897.41Uncharacterized protein OS=Cucumis sativus GN=Csa_6G016910 PE=4 SV=1[more]
BLAST of CSPI06G02480.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G02480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190668|gb|KGN45872.1|3.4e-5897.41hypothetical protein Csa_6G016910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI06G02480CSPI06G02480gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI06G02480.1CSPI06G02480.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G02480.1.utr5p1CSPI06G02480.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G02480.1.cds1CSPI06G02480.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI06G02480.1.utr3p1CSPI06G02480.1.utr3p1three_prime_UTR