Csa6G012240 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G012240
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLOB domain-containing protein, putative; contains IPR004883 (Lateral organ boundaries, LOB)
LocationChr6 : 1331948 .. 1332401 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTCCCACTTGTATTTTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAATGTTAGTAAGATTTTGACTGAAGTTCCTGAAGAACAGAGAGAAGATACTGTTAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTTAGAGATCCTGTTTACGGCTGCATTGGTGCTATAGCTTTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCTCTTGCTAAAGCTCGTCTCGCTCGTTACGCTAATAATAACACTTCCTCTTCTTCTTCTTCTTCTTCTTGTGTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGCTGAGCAGAGTTCTTCTGATGATATCACCCAATATGGATATTTATGTGATTTCACCCATTTTCCTTATCCATTTAAAGCTTGA

mRNA sequence

ATGTATTCCCACTTGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAATGTTAGTAAGATTTTGACTGAAGTTCCTGAAGAACAGAGAGAAGATACTGTTAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTTAGAGATCCTGTTTACGGCTGCATTGGTGCTATAGCTTTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCTCTTGCTAAAGCTCGTCTCGCTCGTTACGCTAATAATAACACTTCCTCTTCTTCTTCTTCTTCTTCTTGTGTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGCTGAGCAGAGTTCTTCTGATGATATCACCCAATATGGATATTTATGTGATTTCACCCATTTTCCTTATCCATTTAAAGCTTGA

Coding sequence (CDS)

ATGTATTCCCACTTGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCATAAGGTTTTTGGGGCAAGTAATGTTAGTAAGATTTTGACTGAAGTTCCTGAAGAACAGAGAGAAGATACTGTTAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTTAGAGATCCTGTTTACGGCTGCATTGGTGCTATAGCTTTGTTGCAGACTAAAATGGTGGAGCTTCAACATGATCTTGCTCTTGCTAAAGCTCGTCTCGCTCGTTACGCTAATAATAACACTTCCTCTTCTTCTTCTTCTTCTTCTTGTGTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGCTGAGCAGAGTTCTTCTGATGATATCACCCAATATGGATATTTATGTGATTTCACCCATTTTCCTTATCCATTTAAAGCTTGA

Protein sequence

MYSHLSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQSSSDDITQYGYLCDFTHFPYPFKA*
Homology
[Close]
BLAST of Csa6G012240 vs. Swiss-Prot
Match: LBD21_ARATH (LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-28
Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 1 

Query: 12  FAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVE 71
           FAKVHKVFGASNVSK+L EVPEEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ KM+E
Sbjct: 40  FAKVHKVFGASNVSKLLGEVPEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLE 99

Query: 72  LQHDLALAKARLARYANNNTSSSS 96
           LQHDLA+A+ RL  ++  N S  S
Sbjct: 100 LQHDLAVARTRLLAHSGVNNSQVS 123

[Close]
BLAST of Csa6G012240 vs. Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.8e-24
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1 

Query: 7   DEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ 66
           D+P+KFA VHKVFGASNV+K+L E+   QRED VNSLAYEA+ RLRDPVYGC+G I+LLQ
Sbjct: 33  DQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQ 92

Query: 67  TKMVELQHDLALAKARLARY 87
            ++ +LQ DL+ AK+ L++Y
Sbjct: 93  HQLRQLQIDLSCAKSELSKY 112

[Close]
BLAST of Csa6G012240 vs. Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 111.3 bits (277), Expect = 8.8e-24
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 7   DEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ 66
           +EP KFA VH++FGASNVSKIL EV   QRED VNSLAYEAEARL+DPVYGC+GAI++LQ
Sbjct: 63  EEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQ 122

Query: 67  TKMVELQHDLALAKARLARYA 88
            +++ LQ +L    A L RYA
Sbjct: 123 RQVLRLQRELEETNADLMRYA 143

[Close]
BLAST of Csa6G012240 vs. Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-23
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1 

Query: 7   DEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ 66
           D+P+KFA VHKVFGASNV+K+L E+   QRED VNSL YEAEARLRDPVYGC+G I++LQ
Sbjct: 31  DQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSLFYEAEARLRDPVYGCVGLISILQ 90

Query: 67  TKMVELQHDLALAKARLARY 87
            ++ ++ HDL  AK  LA Y
Sbjct: 91  HRLKQVNHDLENAKKELATY 110

[Close]
BLAST of Csa6G012240 vs. Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-23
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 7   DEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ 66
           +EP KFA VHK+FGASNV+K+L E+   QRED VNSLAYEAEAR+RDPVYGC+GAI+ LQ
Sbjct: 35  EEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQ 94

Query: 67  TKMVELQHDLALAKARLARYANNNTSSSSSSSSCVE 103
            ++  LQ +L  A A LA Y   +TS++ +  + V+
Sbjct: 95  RQVHRLQKELDAANADLAHY-GLSTSAAGAPGNVVD 129

[Close]
BLAST of Csa6G012240 vs. TrEMBL
Match: A0A0A0KAD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G012240 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 5.9e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MYSHLSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIG 60
           MYSHLSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIG
Sbjct: 1   MYSHLSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIG 60

Query: 61  AIALLQTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQS 120
           AIALLQTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQS
Sbjct: 61  AIALLQTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQS 120

Query: 121 SSDDITQYGYLCDFTHFPYPFKA 144
           SSDDITQYGYLCDFTHFPYPFKA
Sbjct: 121 SSDDITQYGYLCDFTHFPYPFKA 143

[Close]
BLAST of Csa6G012240 vs. TrEMBL
Match: A0A059BI25_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03078 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.0e-39
Identity = 97/141 (68.79%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65
           SDEPKKFAKVHKVFGASNVSKIL EVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 43  SDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 102

Query: 66  QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSY-----GGLSFSAEQS 125
           Q KM+ELQHDLA+A+ARLARY     S+SS S    EN  +   Y      G++ S  QS
Sbjct: 103 QRKMLELQHDLAIARARLARYTVPAVSTSSPSVLMDENVGMVSFYDMPCCSGVNESFGQS 162

Query: 126 SSDDITQYGYLCDFTHFPYPF 142
           SS  +TQ   + DF  FPY F
Sbjct: 163 SS-QLTQVQPMNDFGQFPYIF 182

[Close]
BLAST of Csa6G012240 vs. TrEMBL
Match: B9HSL3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19340g PE=4 SV=2)

HSP 1 Score: 168.7 bits (426), Expect = 5.2e-39
Identity = 93/136 (68.38%), Postives = 102/136 (75.00%), Query Frame = 1 

Query: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65
           SDEPKKFAKVHKVFGASNVSKIL EVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 53  SDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 112

Query: 66  QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQSSSDDI 125
           Q KMVELQ DLA+A+ARLARYA N+    +   S +       + GGL  S  Q+SSD +
Sbjct: 113 QRKMVELQVDLAIARARLARYAANSPPLLNDHGSMIPTFAEFPACGGLVDSFSQNSSDTM 172

Query: 126 TQYGYLCDFTHFPYPF 142
                  DF+ FPY F
Sbjct: 173 N------DFSQFPYIF 182

[Close]
BLAST of Csa6G012240 vs. TrEMBL
Match: B9SQQ2_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0839580 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.7e-38
Identity = 89/143 (62.24%), Postives = 110/143 (76.92%), Query Frame = 1 

Query: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65
           SDEPKKFA+VHK+FGASNVSKIL EVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 34  SDEPKKFARVHKIFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 93

Query: 66  QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNM-------SYGGLSFSAE 125
           Q KMVELQ DLA+AKARLARY   ++S SS+S++ + +   ++       + GG+   + 
Sbjct: 94  QRKMVELQVDLAIAKARLARYTAISSSFSSASTASILSDRSSLAAFNEFPACGGMVVDSF 153

Query: 126 QSSSDDITQYGYLCDFTHFPYPF 142
             +S +++Q   + DF+ FPY F
Sbjct: 154 SQTSSELSQDRVVNDFSQFPYIF 176

[Close]
BLAST of Csa6G012240 vs. TrEMBL
Match: A9P9I7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07150g PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 90/134 (67.16%), Postives = 100/134 (74.63%), Query Frame = 1 

Query: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65
           SDEPKKFA+VHKVFGASNVSKIL EVPEEQREDTVNSLAYEAEARL DPVYGCIGAIALL
Sbjct: 34  SDEPKKFARVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLTDPVYGCIGAIALL 93

Query: 66  QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQSSSDDI 125
           Q KMVELQ DLA+A+ARLARYA N+    +   S +       + GGL  S  QSSSD +
Sbjct: 94  QRKMVELQVDLAIARARLARYAANSPPILNDHGSMIPTLAEFPACGGLVDSFNQSSSDTM 153

Query: 126 TQYGYLCDFTHFPY 140
                  DF+ FP+
Sbjct: 154 N------DFSQFPF 161

[Close]
BLAST of Csa6G012240 vs. TAIR10
Match: AT3G11090.1 (AT3G11090.1 LOB domain-containing protein 21)

HSP 1 Score: 127.1 bits (318), Expect = 8.8e-30
Identity = 63/84 (75.00%), Postives = 70/84 (83.33%), Query Frame = 1 

Query: 12  FAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVE 71
           FAKVHKVFGASNVSK+L EVPEEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ KM+E
Sbjct: 40  FAKVHKVFGASNVSKLLGEVPEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLE 99

Query: 72  LQHDLALAKARLARYANNNTSSSS 96
           LQHDLA+A+ RL  ++  N S  S
Sbjct: 100 LQHDLAVARTRLLAHSGVNNSQVS 123

[Close]
BLAST of Csa6G012240 vs. TAIR10
Match: AT1G65620.1 (AT1G65620.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-25
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1 

Query: 7   DEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ 66
           D+P+KFA VHKVFGASNV+K+L E+   QRED VNSLAYEA+ RLRDPVYGC+G I+LLQ
Sbjct: 33  DQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQ 92

Query: 67  TKMVELQHDLALAKARLARY 87
            ++ +LQ DL+ AK+ L++Y
Sbjct: 93  HQLRQLQIDLSCAKSELSKY 112

[Close]
BLAST of Csa6G012240 vs. TAIR10
Match: AT3G27650.1 (AT3G27650.1 LOB domain-containing protein 25)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-25
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1 

Query: 7   DEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ 66
           +EP KFA VH++FGASNVSKIL EV   QRED VNSLAYEAEARL+DPVYGC+GAI++LQ
Sbjct: 63  EEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQ 122

Query: 67  TKMVELQHDLALAKARLARYA 88
            +++ LQ +L    A L RYA
Sbjct: 123 RQVLRLQRELEETNADLMRYA 143

[Close]
BLAST of Csa6G012240 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 1 

Query: 7   DEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ 66
           D+P+KFA VHKVFGASNV+K+L E+   QRED VNSL YEAEARLRDPVYGC+G I++LQ
Sbjct: 31  DQPQKFAFVHKVFGASNVAKLLNELASNQREDAVNSLFYEAEARLRDPVYGCVGLISILQ 90

Query: 67  TKMVELQHDLALAKARLARY 87
            ++ ++ HDL  AK  LA Y
Sbjct: 91  HRLKQVNHDLENAKKELATY 110

[Close]
BLAST of Csa6G012240 vs. TAIR10
Match: AT5G63090.2 (AT5G63090.2 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 108.2 bits (269), Expect = 4.2e-24
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 7   DEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ 66
           +EP KFA VHK+FGASNV+K+L E+   QRED VNSLAYEAEAR+RDPVYGC+GAI+ LQ
Sbjct: 35  EEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQ 94

Query: 67  TKMVELQHDLALAKARLARYANNNTSSSSSSSSCVE 103
            ++  LQ +L  A A LA Y   +TS++ +  + V+
Sbjct: 95  RQVHRLQKELDAANADLAHY-GLSTSAAGAPGNVVD 129

[Close]
BLAST of Csa6G012240 vs. NCBI nr
Match: gi|700190595|gb|KGN45799.1| (hypothetical protein Csa_6G012240 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 8.4e-75
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MYSHLSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIG 60
           MYSHLSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIG
Sbjct: 1   MYSHLSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIG 60

Query: 61  AIALLQTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQS 120
           AIALLQTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQS
Sbjct: 61  AIALLQTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQS 120

Query: 121 SSDDITQYGYLCDFTHFPYPFKA 144
           SSDDITQYGYLCDFTHFPYPFKA
Sbjct: 121 SSDDITQYGYLCDFTHFPYPFKA 143

[Close]
BLAST of Csa6G012240 vs. NCBI nr
Match: gi|449441290|ref|XP_004138415.1| (PREDICTED: LOB domain-containing protein 21 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 1.5e-71
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

Query: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65
           SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 35  SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 94

Query: 66  QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQSSSDDI 125
           QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQSSSDDI
Sbjct: 95  QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQSSSDDI 154

Query: 126 TQYGYLCDFTHFPYPFKA 144
           TQYGYLCDFTHFPYPFKA
Sbjct: 155 TQYGYLCDFTHFPYPFKA 172

[Close]
BLAST of Csa6G012240 vs. NCBI nr
Match: gi|659081716|ref|XP_008441477.1| (PREDICTED: LOB domain-containing protein 21-like [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 1 

Query: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65
           SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 35  SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 94

Query: 66  QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSYGGLSFSAEQSSSDDI 125
           QTKMVELQHDLALAKARLARYA+NNTSSSSSSSSC ENCVVNMSYGGLSFSAEQSSSDDI
Sbjct: 95  QTKMVELQHDLALAKARLARYAHNNTSSSSSSSSCAENCVVNMSYGGLSFSAEQSSSDDI 154

Query: 126 TQYGYLCDFTHFPYPFKA 144
           TQYGYLCDFTHFPYPFKA
Sbjct: 155 TQYGYLCDFTHFPYPFKA 172

[Close]
BLAST of Csa6G012240 vs. NCBI nr
Match: gi|702424900|ref|XP_010067553.1| (PREDICTED: LOB domain-containing protein 21 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 169.1 bits (427), Expect = 5.7e-39
Identity = 97/141 (68.79%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65
           SDEPKKFAKVHKVFGASNVSKIL EVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 43  SDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 102

Query: 66  QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSY-----GGLSFSAEQS 125
           Q KM+ELQHDLA+A+ARLARY     S+SS S    EN  +   Y      G++ S  QS
Sbjct: 103 QRKMLELQHDLAIARARLARYTVPAVSTSSPSVLMDENVGMVSFYDMPCCSGVNESFGQS 162

Query: 126 SSDDITQYGYLCDFTHFPYPF 142
           SS  +TQ   + DF  FPY F
Sbjct: 163 SS-QLTQVQPMNDFGQFPYIF 182

[Close]
BLAST of Csa6G012240 vs. NCBI nr
Match: gi|702424894|ref|XP_010067552.1| (PREDICTED: LOB domain-containing protein 21 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 169.1 bits (427), Expect = 5.7e-39
Identity = 97/141 (68.79%), Postives = 106/141 (75.18%), Query Frame = 1 

Query: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65
           SDEPKKFAKVHKVFGASNVSKIL EVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 58  SDEPKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 117

Query: 66  QTKMVELQHDLALAKARLARYANNNTSSSSSSSSCVENCVVNMSY-----GGLSFSAEQS 125
           Q KM+ELQHDLA+A+ARLARY     S+SS S    EN  +   Y      G++ S  QS
Sbjct: 118 QRKMLELQHDLAIARARLARYTVPAVSTSSPSVLMDENVGMVSFYDMPCCSGVNESFGQS 177

Query: 126 SSDDITQYGYLCDFTHFPYPF 142
           SS  +TQ   + DF  FPY F
Sbjct: 178 SS-QLTQVQPMNDFGQFPYIF 197

The following BLAST results are available for this feature:
BLAST of Csa6G012240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD21_ARATH1.6e-2875.00LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1[more]
LBD6_ARATH8.8e-2465.00LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1[more]
LBD25_ARATH8.8e-2466.67LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3[more]
LBD36_ARATH2.0e-2365.00LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1[more]
LOB_ARATH7.5e-2357.29Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1[more]
BLAST of Csa6G012240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAD8_CUCSA5.9e-75100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G012240 PE=4 SV=1[more]
A0A059BI25_EUCGR4.0e-3968.79Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03078 PE=4 SV=1[more]
B9HSL3_POPTR5.2e-3968.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19340g PE=4 SV=2[more]
B9SQQ2_RICCO5.7e-3862.24LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0839580 PE=4... [more]
A9P9I7_POPTR1.3e-3767.16Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07150g PE=2 SV=1[more]
BLAST of Csa6G012240 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G11090.18.8e-3075.00 LOB domain-containing protein 21[more]
AT1G65620.15.0e-2565.00 Lateral organ boundaries (LOB) domain family protein[more]
AT3G27650.15.0e-2566.67 LOB domain-containing protein 25[more]
AT5G66870.11.1e-2465.00 ASYMMETRIC LEAVES 2-like 1[more]
AT5G63090.24.2e-2457.29 Lateral organ boundaries (LOB) domain family protein[more]
BLAST of Csa6G012240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190595|gb|KGN45799.1|8.4e-75100.00hypothetical protein Csa_6G012240 [Cucumis sativus][more]
gi|449441290|ref|XP_004138415.1|1.5e-71100.00PREDICTED: LOB domain-containing protein 21 [Cucumis sativus][more]
gi|659081716|ref|XP_008441477.1|1.6e-7098.55PREDICTED: LOB domain-containing protein 21-like [Cucumis melo][more]
gi|702424900|ref|XP_010067553.1|5.7e-3968.79PREDICTED: LOB domain-containing protein 21 isoform X2 [Eucalyptus grandis][more]
gi|702424894|ref|XP_010067552.1|5.7e-3968.79PREDICTED: LOB domain-containing protein 21 isoform X1 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU097704cucumber EST collection version 3.0transcribed_cluster
CU129762cucumber EST collection version 3.0transcribed_cluster
CU151325cucumber EST collection version 3.0transcribed_cluster
CU165248cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G012240.1Csa6G012240.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU097704CU097704transcribed_cluster
CU151325CU151325transcribed_cluster
CU165248CU165248transcribed_cluster
CU129762CU129762transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 6..80
score: 1.7
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 1..83
score: 16
NoneNo IPR availableunknownCoilCoilcoord: 62..89
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 6..125
score: 2.5
NoneNo IPR availablePANTHERPTHR31301:SF24LOB DOMAIN-CONTAINING PROTEIN 21coord: 6..125
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G012240MELO3C008309Melon (DHL92) v3.5.1cumeB467
Csa6G012240ClCG11G006030Watermelon (Charleston Gray)cuwcgB429
Csa6G012240Lsi03G002970Bottle gourd (USVL1VR-Ls)culsiB444
Csa6G012240MELO3C008309.2Melon (DHL92) v3.6.1cumedB448
Csa6G012240Cla97C11G212950Watermelon (97103) v2cuwmbB423
Csa6G012240Bhi04G001877Wax gourdcuwgoB586
Csa6G012240CSPI06G01790Wild cucumber (PI 183967)cpicuB314
Csa6G012240Cucsa.136740Cucumber (Gy14) v1cgycuB195
Csa6G012240CmaCh15G001400Cucurbita maxima (Rimu)cmacuB309
Csa6G012240CmoCh15G001560Cucurbita moschata (Rifu)cmocuB296
Csa6G012240Cp4.1LG01g21850Cucurbita pepo (Zucchini)cpecuB460
Csa6G012240CsGy6G001890Cucumber (Gy14) v2cgybcuB282
Csa6G012240Carg05968Silver-seed gourdcarcuB0023
Csa6G012240Carg02132Silver-seed gourdcarcuB0297
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G012240Melon (DHL92) v3.5.1cumeB459
Csa6G012240Melon (DHL92) v3.5.1cumeB506
Csa6G012240Watermelon (Charleston Gray)cuwcgB467
Csa6G012240Watermelon (Charleston Gray)cuwcgB490
Csa6G012240Watermelon (97103) v1cuwmB482
Csa6G012240Watermelon (97103) v1cuwmB508
Csa6G012240Watermelon (97103) v1cuwmB533
Csa6G012240Cucurbita pepo (Zucchini)cpecuB086
Csa6G012240Cucurbita pepo (Zucchini)cpecuB198
Csa6G012240Cucurbita pepo (Zucchini)cpecuB465
Csa6G012240Bottle gourd (USVL1VR-Ls)culsiB432
Csa6G012240Bottle gourd (USVL1VR-Ls)culsiB458
Csa6G012240Cucumber (Gy14) v2cgybcuB184
Csa6G012240Melon (DHL92) v3.6.1cumedB491
Csa6G012240Silver-seed gourdcarcuB0586
Csa6G012240Silver-seed gourdcarcuB0697
Csa6G012240Watermelon (97103) v2cuwmbB458
Csa6G012240Watermelon (97103) v2cuwmbB482
Csa6G012240Cucumber (Chinese Long) v2cucuB144
Csa6G012240Cucumber (Chinese Long) v2cucuB163
Csa6G012240Cucurbita maxima (Rimu)cmacuB682
Csa6G012240Cucurbita maxima (Rimu)cmacuB768
Csa6G012240Cucurbita maxima (Rimu)cmacuB772
Csa6G012240Cucurbita maxima (Rimu)cmacuB774
Csa6G012240Cucurbita maxima (Rimu)cmacuB876
Csa6G012240Cucurbita moschata (Rifu)cmocuB671
Csa6G012240Cucurbita moschata (Rifu)cmocuB759
Csa6G012240Cucurbita moschata (Rifu)cmocuB764