Carg05968 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05968
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	LOB domain-containing protein, putative
Location	Cucurbita_argyrosperma_scaffold_026 : 471533 .. 472048 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAACGAAGGTGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAGCCGAAGAAATTTGCCAAGGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGTAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCGGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGCGCCATAGCTTTGTTGCAGACTAAATTGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATAATACTTCTTCTACTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTGATGATATCTCCCAATATGGTTTTTTATGTGACTTTACCCATTTTCCATATCCATTTCAAGCTTGA

mRNA sequence

ATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAACGAAGGTGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAGCCGAAGAAATTTGCCAAGGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGTAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCGGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGCGCCATAGCTTTGTTGCAGACTAAATTGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATAATACTTCTTCTACTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTGATGATATCTCCCAATATGGTTTTTTATGTGACTTTACCCATTTTCCATATCCATTTCAAGCTTGA

Coding sequence (CDS)

ATGAGAGGGTGCCATGATACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAACGAAGGTGCACGCCCACTTGCATATTTGCGCCTTATTTTAGGTCTGATGAGCCGAAGAAATTTGCCAAGGTTCACAAAGTGTTTGGGGCGAGTAATGTGAGTAAGATTCTGACGGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCGGAGGCTAGGCTGAGAGATCCTGTTTATGGATGCATCGGCGCCATAGCTTTGTTGCAGACTAAATTGGCGGAGCTTCAACATGATCTTGCTCTTGCCAAAGCTCGCCTAGCTCGTTATGCTGCTGCTAATAATAATAATACTTCTTCTACTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTTTCTCTGGGCAGAGTTCTGATGATATCTCCCAATATGGTTTTTTATGTGACTTTACCCATTTTCCATATCCATTTCAAGCTTGA

Protein sequence

MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA

Homology

[Close]

BLAST of Carg05968 vs. NCBI nr
Match: XP_022953486.1 (LOB domain-containing protein 21-like [Cucurbita moschata])

HSP 1 Score: 339.3 bits (869), Expect = 7.4e-90
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+AELQHDLALAKARLARYAAANN
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANN 120

Query: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 172
           N TSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA
Sbjct: 121 NXTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 171

[Close]

BLAST of Carg05968 vs. NCBI nr
Match: XP_023521654.1 (LOB domain-containing protein 21-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023521655.1 LOB domain-containing protein 21-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023535900.1 LOB domain-containing protein 21-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336.3 bits (861), Expect = 6.2e-89
Identity = 167/171 (97.66%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+AELQHDLALAKARLARYAAANN
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAAANN 120

Query: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 172
           N +SSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYG+LCDFTHFPYPFQA
Sbjct: 121 NYSSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGYLCDFTHFPYPFQA 171

[Close]

BLAST of Carg05968 vs. NCBI nr
Match: XP_022990592.1 (LOB domain-containing protein 21-like [Cucurbita maxima])

HSP 1 Score: 307.4 bits (786), Expect = 3.1e-80
Identity = 157/177 (88.70%), Postives = 160/177 (90.40%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYA---- 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+AELQHDLALAKARLARYA    
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMAELQHDLALAKARLARYAXXXX 120

Query: 121 --AANNNNTSSTSLGVLENCVVNMSYGGLSFSGQSSDDISQYGFLCDFTHFPYPFQA 172
                        LGVLE+CVVNMSYGGLSFSGQSSDDISQYG+LCDFTHFPYPFQA
Sbjct: 121 XXXXXXXXXXXXXLGVLESCVVNMSYGGLSFSGQSSDDISQYGYLCDFTHFPYPFQA 177

[Close]

BLAST of Carg05968 vs. NCBI nr
Match: XP_023549827.1 (LOB domain-containing protein 21-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 1.7e-78
Identity = 152/173 (87.86%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCH+TRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+ ELQHDLA+AKARLARYA +++
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120

Query: 121 N-NTSSTSLGVLENCVVNMSYGGLSF-SGQSSDDISQYGFLCDFTHFPYPFQA 172
           N N+ S+SLGVLENCVVNM YGGLS  +GQSS  I+QYG+LCDFTHFPYPF+A
Sbjct: 121 NYNSFSSSLGVLENCVVNMPYGGLSIAAGQSSSAITQYGYLCDFTHFPYPFKA 173

[Close]

BLAST of Carg05968 vs. NCBI nr
Match: XP_022938953.1 (LOB domain-containing protein 21-like [Cucurbita moschata])

HSP 1 Score: 286.6 bits (732), Expect = 5.7e-74
Identity = 147/179 (82.12%), Postives = 157/179 (87.71%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRGCH+TRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+ ELQHDLA+AKARLARYA +++
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120

Query: 121 N-------NTSSTSLGVLENCVVNMSYGGLSF-SGQSSDDISQYGFLCDFTHFPYPFQA 172
           N              GVLENCVVNM YGGLS  +GQSS  I+QYG+LCDFTHFPYP +A
Sbjct: 121 NYXXXXXXXXXXXXXGVLENCVVNMPYGGLSIAAGQSSSAITQYGYLCDFTHFPYPSKA 179

[Close]

BLAST of Carg05968 vs. TAIR10
Match: AT3G11090.1 (LOB domain-containing protein 21)

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-47
Identity = 94/124 (75.81%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG H+ RSSSSCAACKLLKRRCTPTCIFAPYFRS +   FAKVHKVFGASNVSK+L EV
Sbjct: 1   MRG-HEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ K+ ELQHDLA+A+ RL  ++  NN
Sbjct: 61  PEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNN 120

Query: 121 NNTS 125
           +  S
Sbjct: 121 SQVS 123

[Close]

BLAST of Carg05968 vs. TAIR10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 149.8 bits (377), Expect = 1.5e-36
Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+C P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSL 128
           VNSLAYEA+ RLRDPVYGC+G I+LLQ +L +LQ DL+ AK+ L++Y +      +  SL
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAATHQSL 125

Query: 129 GV 131
           G+
Sbjct: 126 GI 127

[Close]

BLAST of Carg05968 vs. TAIR10
Match: AT5G66870.1 (ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-36
Identity = 71/107 (66.36%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           SSS CAACK L+R+CT  C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 4   SSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDA 63

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARY 116
           VNSL YEAEARLRDPVYGC+G I++LQ +L ++ HDL  AK  LA Y
Sbjct: 64  VNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY 110

[Close]

BLAST of Carg05968 vs. TAIR10
Match: AT3G27650.1 (LOB domain-containing protein 25)

HSP 1 Score: 147.1 bits (370), Expect = 9.7e-36
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+CT  C+FAPYF  +EP KFA VH++FGASNVSKIL EV   QRED 
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSS 126
           VNSLAYEAEARL+DPVYGC+GAI++LQ ++  LQ +L    A L RYA      T+S
Sbjct: 96  VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYAGCLGGETTS 152

[Close]

BLAST of Carg05968 vs. TAIR10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-34
Identity = 69/111 (62.16%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 10  SSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTV 69
           +S CAACK L+R+C P CIFAPYF  +EP KFA VHK+FGASNV+K+L E+   QRED V
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 70  NSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 121
           NSLAYEAEAR+RDPVYGC+GAI+ LQ ++  LQ +L  A A LA Y  + +
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTS 119

[Close]

BLAST of Carg05968 vs. Swiss-Prot
Match: sp|Q9SRL8|LBD21_ARATH (LOB domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=LBD21 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.4e-46
Identity = 94/124 (75.81%), Postives = 106/124 (85.48%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG H+ RSSSSCAACKLLKRRCTPTCIFAPYFRS +   FAKVHKVFGASNVSK+L EV
Sbjct: 1   MRG-HEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ K+ ELQHDLA+A+ RL  ++  NN
Sbjct: 61  PEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNN 120

Query: 121 NNTS 125
           +  S
Sbjct: 121 SQVS 123

[Close]

BLAST of Carg05968 vs. Swiss-Prot
Match: sp|O04479|AS2_ARATH (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-35
Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+C P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSL 128
           VNSLAYEA+ RLRDPVYGC+G I+LLQ +L +LQ DL+ AK+ L++Y +      +  SL
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKYQSLGILAATHQSL 125

Query: 129 GV 131
           G+
Sbjct: 126 GI 127

[Close]

BLAST of Carg05968 vs. Swiss-Prot
Match: sp|Q9FKZ3|LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.6e-35
Identity = 71/107 (66.36%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           SSS CAACK L+R+CT  C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 4   SSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDA 63

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARY 116
           VNSL YEAEARLRDPVYGC+G I++LQ +L ++ HDL  AK  LA Y
Sbjct: 64  VNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY 110

[Close]

BLAST of Carg05968 vs. Swiss-Prot
Match: sp|Q8L8Q3|LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-34
Identity = 72/117 (61.54%), Postives = 88/117 (75.21%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+CT  C+FAPYF  +EP KFA VH++FGASNVSKIL EV   QRED 
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSS 126
           VNSLAYEAEARL+DPVYGC+GAI++LQ ++  LQ +L    A L RYA      T+S
Sbjct: 96  VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYAGCLGGETTS 152

[Close]

BLAST of Carg05968 vs. Swiss-Prot
Match: sp|Q32SG3|LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.7e-34
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           + S CAACK L+R+C P C+FAPYF  D P+KF  VH+VFGASNV+K+L E+   QRED 
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTSSTSL 128
           VNSLAYEA+ RLRDPVYGC+G I++LQ  L +LQ DLA AK  L++Y AA   + S+   
Sbjct: 90  VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASXSTAPT 149

Query: 129 G 130
           G
Sbjct: 150 G 150

[Close]

BLAST of Carg05968 vs. TrEMBL
Match: tr|A0A1S3B334|A0A1S3B334_CUCME (LOB domain-containing protein 21-like OS=Cucumis melo OX=3656 GN=LOC103485585 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 9.2e-73
Identity = 146/173 (84.39%), Postives = 152/173 (87.86%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG H+TRSSSSCAACKLLKRRC PTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTK+ ELQHDLALAKARLARY A   
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARY-AHXX 120

Query: 121 NNTSSTSLGVLENCVVNMSYGGLSFSGQ--SSDDISQYGFLCDFTHFPYPFQA 172
                      ENCVVNMSYGGLSFS +  SSDDI+QYG+LCDFTHFPYPF+A
Sbjct: 121 XXXXXXXXXXXENCVVNMSYGGLSFSAEQSSSDDITQYGYLCDFTHFPYPFKA 172

[Close]

BLAST of Carg05968 vs. TrEMBL
Match: tr|A0A2P5E0F4|A0A2P5E0F4_PARAD (Lateral organ boundaries domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_015080 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 7.3e-54
Identity = 119/180 (66.11%), Postives = 138/180 (76.67%), Query Frame = 0


Query: 1   MRGCHDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           M+G H+ RSSSSCAACK LKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKIL EV
Sbjct: 1   MKGGHEPRSSSSCAACKFLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANN 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ K+AELQ DLA+A+ARLAR+AA ++
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMAELQRDLAVARARLARFAATSS 120

Query: 121 NNTSSTSLGVLENCVVN-MSYGGL------------SFSGQSSDDISQYGFLCDFTHFPY 168
            ++SS    +L+  +++  +Y GL                 SS +  Q G + DF+  PY
Sbjct: 121 PSSSSPYSPILDGRLISEAAYSGLPAACAGLNSTNDGLISPSSFEFGQNGSIYDFSFVPY 180

[Close]

BLAST of Carg05968 vs. TrEMBL
Match: tr|A0A1R3KN34|A0A1R3KN34_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06429 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.3e-53
Identity = 121/173 (69.94%), Postives = 135/173 (78.03%), Query Frame = 0


Query: 5   HDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQ 64
           H+ RSSSSCAACKLLKRRCTP CIFAPYFRSDEPKKFAKVHKVFGASNVSKIL EVPEEQ
Sbjct: 4   HEPRSSSSCAACKLLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQ 63

Query: 65  REDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTS 124
           REDTVNSLAYEAEARLRDPVYGCIGAIALLQ ++ ELQHDLALA+ARLARYAA      +
Sbjct: 64  REDTVNSLAYEAEARLRDPVYGCIGAIALLQRRMIELQHDLALARARLARYAA------T 123

Query: 125 STSLGVLENCVVNM--------SYGGL--SFSGQSSDDISQYGFLCDFTHFPY 168
           STS  ++ N  ++M        + GG   SF   SSD ++Q   + DF+  PY
Sbjct: 124 STSPAIITNDRLSMAPFGEFPAACGGFIDSFYQTSSDVLNQEANMYDFSQIPY 170

[Close]

BLAST of Carg05968 vs. TrEMBL
Match: tr|A0A0A0KAD8|A0A0A0KAD8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G012240 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.6e-53
Identity = 115/139 (82.73%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 35  SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 94
           SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65

Query: 95  QTKLAELQHDLALAKARLARYAAANNNNTSSTSLGVLENCVVNMSYGGLSFSGQ--SSDD 154
           QTK+ ELQHDLALAKARLARY A              ENCVVNMSYGGLSFS +  SSDD
Sbjct: 66  QTKMVELQHDLALAKARLARY-ANXXXXXXXXXXXXXENCVVNMSYGGLSFSAEQSSSDD 125

Query: 155 ISQYGFLCDFTHFPYPFQA 172
           I+QYG+LCDFTHFPYPF+A
Sbjct: 126 ITQYGYLCDFTHFPYPFKA 143

[Close]

BLAST of Carg05968 vs. TrEMBL
Match: tr|A0A2P5QGF0|A0A2P5QGF0_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39446 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 4.8e-53
Identity = 117/168 (69.64%), Postives = 131/168 (77.98%), Query Frame = 0


Query: 5   HDTRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQ 64
           H+ RS+SSCAACKLLKRRC+PTCIFAPYFRSDEPKKFAKVHKVFGASNVSKIL EVPEEQ
Sbjct: 4   HEPRSTSSCAACKLLKRRCSPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQ 63

Query: 65  REDTVNSLAYEAEARLRDPVYGCIGAIALLQTKLAELQHDLALAKARLARYAAANNNNTS 124
           REDTVNSL YEAEARLRDPVYGCIGAIALLQ K+ ELQHDLALA+ARLARYAA  +   +
Sbjct: 64  REDTVNSLVYEAEARLRDPVYGCIGAIALLQRKMIELQHDLALARARLARYAANYSTGVA 123

Query: 125 STSLGVLENCVVN---MSYGGL--SFSGQSSDDISQYGFLCDFTHFPY 168
            T L  L    +    ++ GG   SF+  SS  ++Q   + D T  PY
Sbjct: 124 GTELDRLTMTGLGEFLVACGGFMDSFNQSSSYQVNQDAHMYDLTQIPY 171

The following BLAST results are available for this feature:

BLAST of Carg05968 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953486.1	7.4e-90	98.83	LOB domain-containing protein 21-like [Cucurbita moschata]	[more]
XP_023521654.1	6.2e-89	97.66	LOB domain-containing protein 21-like isoform X1 [Cucurbita pepo subsp. pepo] >X...	[more]
XP_022990592.1	3.1e-80	88.70	LOB domain-containing protein 21-like [Cucurbita maxima]	[more]
XP_023549827.1	1.7e-78	87.86	LOB domain-containing protein 21-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022938953.1	5.7e-74	82.12	LOB domain-containing protein 21-like [Cucurbita moschata]	[more]

BLAST of Carg05968 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11090.1	1.9e-47	75.81	LOB domain-containing protein 21	[more]
AT1G65620.1	1.5e-36	59.02	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G66870.1	2.6e-36	66.36	ASYMMETRIC LEAVES 2-like 1	[more]
AT3G27650.1	9.7e-36	61.54	LOB domain-containing protein 25	[more]
AT5G63090.2	1.8e-34	62.16	Lateral organ boundaries (LOB) domain family protein	[more]

BLAST of Carg05968 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SRL8\|LBD21_ARATH	3.4e-46	75.81	LOB domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=LBD21 PE=2 S...	[more]
sp\|O04479\|AS2_ARATH	2.7e-35	59.02	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
sp\|Q9FKZ3\|LBD36_ARATH	4.6e-35	66.36	LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 S...	[more]
sp\|Q8L8Q3\|LBD25_ARATH	1.8e-34	61.54	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
sp\|Q32SG3\|LBD6_MAIZE	6.7e-34	58.68	LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	[more]

BLAST of Carg05968 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B334\|A0A1S3B334_CUCME	9.2e-73	84.39	LOB domain-containing protein 21-like OS=Cucumis melo OX=3656 GN=LOC103485585 PE...	[more]
tr\|A0A2P5E0F4\|A0A2P5E0F4_PARAD	7.3e-54	66.11	Lateral organ boundaries domain containing protein OS=Parasponia andersonii OX=3...	[more]
tr\|A0A1R3KN34\|A0A1R3KN34_9ROSI	1.3e-53	69.94	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_06429 PE=4 SV=1	[more]
tr\|A0A0A0KAD8\|A0A0A0KAD8_CUCSA	1.6e-53	82.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G012240 PE=4 SV=1	[more]
tr\|A0A2P5QGF0\|A0A2P5QGF0_GOSBA	4.8e-53	69.64	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA39446 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05968-RA	Carg05968-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..118
None	No IPR available	PANTHER	PTHR31301:SF24	LOB DOMAIN-CONTAINING PROTEIN 21	coord: 1..169
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..169
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 12..109 e-value: 7.2E-40 score: 135.4
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 11..112 score: 25.595

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05968	Cla006601	Watermelon (97103) v1	carwmB0024
Carg05968	Csa6G012240	Cucumber (Chinese Long) v2	carcuB0023
Carg05968	MELO3C008309	Melon (DHL92) v3.5.1	carmeB0023
Carg05968	ClCG11G006030	Watermelon (Charleston Gray)	carwcgB0019
Carg05968	CSPI06G01790	Wild cucumber (PI 183967)	carcpiB0024
Carg05968	Cucsa.136740	Cucumber (Gy14) v1	carcgyB0019
Carg05968	CmaCh15G001400	Cucurbita maxima (Rimu)	carcmaB0030
Carg05968	CmaCh04G028940	Cucurbita maxima (Rimu)	carcmaB0033
Carg05968	CmoCh15G001560	Cucurbita moschata (Rifu)	carcmoB0031
Carg05968	Lsi03G002970	Bottle gourd (USVL1VR-Ls)	carlsiB017
Carg05968	Cp4.1LG01g21850	Cucurbita pepo (Zucchini)	carcpeB0034
Carg05968	CsGy6G001890	Cucumber (Gy14) v2	carcgybB0023
Carg05968	MELO3C008309.2	Melon (DHL92) v3.6.1	carmedB0024
Carg05968	CsaV3_6G001930	Cucumber (Chinese Long) v3	carcucB0024
Carg05968	Cla97C11G212950	Watermelon (97103) v2	carwmbB0015
Carg05968	Bhi04G001877	Wax gourd	carwgoB0022

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05968	Carg02132	Silver-seed gourd	carcarB020

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05968	Cucurbita moschata (Rifu)	carcmoB0033
Carg05968	Cucurbita pepo (Zucchini)	carcpeB0031
Carg05968	Watermelon (97103) v2	carwmbB0021
Carg05968	Wax gourd	carwgoB0025
Carg05968	Silver-seed gourd	carcarB022
Carg05968	Silver-seed gourd	carcarB023
Carg05968	Silver-seed gourd	carcarB025