CmaCh15G001400 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G001400
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLOB domain-containing protein, putative
LocationCma_Chr15 : 668330 .. 668878 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGTTGCCATGAGACTCGCTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTCAAGAGAAGATGCACTCCCACTTGTATATTTGCGCCTTATTTTCGGTCTGATGAGCCTAAGAAGTTTGCTAAAGTTCATAAGGTTTTTGGGGCCAGTAATGTGAGCAAGATTCTGACTGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCTGAGGCCAGGCTGAGAGACCCTGTTTATGGCTGCATCGGTGCCATAGCTCTGTTACAGACTAAAATGGTGGAGCTTCAACATGATCTTGCCATTGCCAAAGCTCGCCTTGCTCGTTATGCTGATTCTGATCATAATTATAACACCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGCCTTATGGTGGATTGAGCATCGCTGCAGGGCAGAGCTCTTCCGCAATCACCCAATATGGATATTTATGTGACTTCACCCACTTTCCTTATCCATTTAAAGCTTGA

mRNA sequence

ATGAGAGGTTGCCATGAGACTCGCTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTCAAGAGAAGATGCACTCCCACTTGTATATTTGCGCCTTATTTTCGGTCTGATGAGCCTAAGAAGTTTGCTAAAGTTCATAAGGTTTTTGGGGCCAGTAATGTGAGCAAGATTCTGACTGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCTGAGGCCAGGCTGAGAGACCCTGTTTATGGCTGCATCGGTGCCATAGCTCTGTTACAGACTAAAATGGTGGAGCTTCAACATGATCTTGCCATTGCCAAAGCTCGCCTTGCTCGTTATGCTGATTCTGATCATAATTATAACACCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGCCTTATGGTGGATTGAGCATCGCTGCAGGGCAGAGCTCTTCCGCAATCACCCAATATGGATATTTATGTGACTTCACCCACTTTCCTTATCCATTTAAAGCTTGA

Coding sequence (CDS)

ATGAGAGGTTGCCATGAGACTCGCTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTCAAGAGAAGATGCACTCCCACTTGTATATTTGCGCCTTATTTTCGGTCTGATGAGCCTAAGAAGTTTGCTAAAGTTCATAAGGTTTTTGGGGCCAGTAATGTGAGCAAGATTCTGACTGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTGAACTCTTTGGCTTATGAGGCTGAGGCCAGGCTGAGAGACCCTGTTTATGGCTGCATCGGTGCCATAGCTCTGTTACAGACTAAAATGGTGGAGCTTCAACATGATCTTGCCATTGCCAAAGCTCGCCTTGCTCGTTATGCTGATTCTGATCATAATTATAACACCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGCCTTATGGTGGATTGAGCATCGCTGCAGGGCAGAGCTCTTCCGCAATCACCCAATATGGATATTTATGTGACTTCACCCACTTTCCTTATCCATTTAAAGCTTGA

Protein sequence

MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDHNYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLSIAAGQSSSAITQYGYLCDFTHFPYPFKA
Homology
[Close]
BLAST of CmaCh15G001400 vs. Swiss-Prot
Match: LBD21_ARATH (LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.9e-45
Identity = 102/161 (63.35%), Postives = 119/161 (73.91%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG HE RSSSSCAACKLLKRRCTPTCIFAPYFRS +   FAKVHKVFGASNVSK+L EV
Sbjct: 1   MRG-HEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ KM+ELQHDLA+A+ RL  ++  ++
Sbjct: 61  PEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNN 120

Query: 121 NYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLSIAAGQSS 162
                S  S    SP     L+     +PY  L +  G ++
Sbjct: 121 -----SQVSPLDDSPELAAFLD----LVPYSDLMLLDGSTN 151

[Close]
BLAST of CmaCh15G001400 vs. Swiss-Prot
Match: LBD36_ARATH (LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.3e-35
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 1 

Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           SSS CAACK L+R+CT  C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 4   SSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDA 63

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARY 116
           VNSL YEAEARLRDPVYGC+G I++LQ ++ ++ HDL  AK  LA Y
Sbjct: 64  VNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY 110

[Close]
BLAST of CmaCh15G001400 vs. Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.2e-35
Identity = 68/107 (63.55%), Postives = 88/107 (82.24%), Query Frame = 1 

Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+C P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARY 116
           VNSLAYEA+ RLRDPVYGC+G I+LLQ ++ +LQ DL+ AK+ L++Y
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]
BLAST of CmaCh15G001400 vs. Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 147.5 bits (371), Expect = 1.4e-34
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+CT  C+FAPYF  +EP KFA VH++FGASNVSKIL EV   QRED 
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYA 117
           VNSLAYEAEARL+DPVYGC+GAI++LQ +++ LQ +L    A L RYA
Sbjct: 96  VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]
BLAST of CmaCh15G001400 vs. Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-33
Identity = 69/106 (65.09%), Postives = 83/106 (78.30%), Query Frame = 1 

Query: 10  SSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTV 69
           +S CAACK L+R+C P CIFAPYF  +EP KFA VHK+FGASNV+K+L E+   QRED V
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 70  NSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARY 116
           NSLAYEAEAR+RDPVYGC+GAI+ LQ ++  LQ +L  A A LA Y
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

[Close]
BLAST of CmaCh15G001400 vs. TrEMBL
Match: A0A0A0KAD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G012240 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.3e-58
Identity = 127/149 (85.23%), Postives = 130/149 (87.25%), Query Frame = 1 

Query: 35  SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 94
           SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65

Query: 95  QTKMVELQHDLAIAKARLARYADSDHNYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLS 154
           QTKMVELQHDLA+AKARLARYA    N NT SSSSSSS        +ENCVVNM YGGLS
Sbjct: 66  QTKMVELQHDLALAKARLARYA----NNNTSSSSSSSS-------CVENCVVNMSYGGLS 125

Query: 155 IAAGQSSS-AITQYGYLCDFTHFPYPFKA 183
            +A QSSS  ITQYGYLCDFTHFPYPFKA
Sbjct: 126 FSAEQSSSDDITQYGYLCDFTHFPYPFKA 143

[Close]
BLAST of CmaCh15G001400 vs. TrEMBL
Match: A0A059BI25_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03078 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-55
Identity = 127/181 (70.17%), Postives = 142/181 (78.45%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           M+G HE RSSSSCAACKLLKR+CT TCIFAPYFRSDEPKKFAKVHKVFGASNVSKIL EV
Sbjct: 10  MKG-HEPRSSSSCAACKLLKRKCTSTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEV 69

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ KM+ELQHDLAIA+ARLARY     
Sbjct: 70  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHDLAIARARLARY----- 129

Query: 121 NYNTFSSSSSSSSSPSSLGVLENCVVNMP-YGGLSIAAGQSSSAITQYGYLCDFTHFPYP 180
                S+SS S     ++G++     +MP   G++ + GQSSS +TQ   + DF  FPY 
Sbjct: 130 TVPAVSTSSPSVLMDENVGMVS--FYDMPCCSGVNESFGQSSSQLTQVQPMNDFGQFPYI 182

[Close]
BLAST of CmaCh15G001400 vs. TrEMBL
Match: W9SFX1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009899 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.8e-55
Identity = 120/156 (76.92%), Postives = 132/156 (84.62%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           M+G HE RSSSSCAACK LKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKIL EV
Sbjct: 1   MKGSHEPRSSSSCAACKFLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ +MVELQ DLAIA+ARLAR+A   +
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRRMVELQRDLAIARARLARFA--AN 120

Query: 121 NYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLSIA 157
           + +  SSSSSSSSS S+  +L+  V  +   G+  A
Sbjct: 121 SSSLCSSSSSSSSSVSNYSILDGRVTEVGLSGIPCA 154

[Close]
BLAST of CmaCh15G001400 vs. TrEMBL
Match: A0A067FNC5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036565mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-52
Identity = 122/186 (65.59%), Postives = 135/186 (72.58%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG HE RSSSSCAACKLLKR+C PTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 10  MRG-HEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 69

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ KM+ELQ DLA+A+ARLARY     
Sbjct: 70  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY----- 129

Query: 121 NYNTFSSSSSSSSSPSSLGVLEN-CVVNMPYGGLSIAAG-------QSSSAITQYGYLCD 179
                     ++ + SS  VL + CV   P      A G       Q+S  + + G + D
Sbjct: 130 ----------TTPAASSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNSLELNRVGDMYD 179

[Close]
BLAST of CmaCh15G001400 vs. TrEMBL
Match: V4T709_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032862mg PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.3e-52
Identity = 122/186 (65.59%), Postives = 135/186 (72.58%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG HE RSSSSCAACKLLKR+C PTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 13  MRG-HEPRSSSSCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 72

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ KM+ELQ DLA+A+ARLARY     
Sbjct: 73  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDLAVARARLARY----- 132

Query: 121 NYNTFSSSSSSSSSPSSLGVLEN-CVVNMPYGGLSIAAG-------QSSSAITQYGYLCD 179
                     ++ + SS  VL + CV   P      A G       Q+S  + + G + D
Sbjct: 133 ----------TTPAASSCAVLNDLCVGGSPAFSDLAACGDFFDSFSQNSLELNRVGDMYD 182

[Close]
BLAST of CmaCh15G001400 vs. TAIR10
Match: AT3G11090.1 (AT3G11090.1 LOB domain-containing protein 21)

HSP 1 Score: 182.6 bits (462), Expect = 2.2e-46
Identity = 102/161 (63.35%), Postives = 119/161 (73.91%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG HE RSSSSCAACKLLKRRCTPTCIFAPYFRS +   FAKVHKVFGASNVSK+L EV
Sbjct: 1   MRG-HEPRSSSSCAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQR++TVNSLAYEAE RL+DPVYGCIGAIA LQ KM+ELQHDLA+A+ RL  ++  ++
Sbjct: 61  PEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKMLELQHDLAVARTRLLAHSGVNN 120

Query: 121 NYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLSIAAGQSS 162
                S  S    SP     L+     +PY  L +  G ++
Sbjct: 121 -----SQVSPLDDSPELAAFLD----LVPYSDLMLLDGSTN 151

[Close]
BLAST of CmaCh15G001400 vs. TAIR10
Match: AT5G66870.1 (AT5G66870.1 ASYMMETRIC LEAVES 2-like 1)

HSP 1 Score: 148.7 bits (374), Expect = 3.6e-36
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 1 

Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           SSS CAACK L+R+CT  C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 4   SSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDA 63

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARY 116
           VNSL YEAEARLRDPVYGC+G I++LQ ++ ++ HDL  AK  LA Y
Sbjct: 64  VNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATY 110

[Close]
BLAST of CmaCh15G001400 vs. TAIR10
Match: AT1G65620.1 (AT1G65620.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 148.3 bits (373), Expect = 4.6e-36
Identity = 68/107 (63.55%), Postives = 88/107 (82.24%), Query Frame = 1 

Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+C P C+FAPYF  D+P+KFA VHKVFGASNV+K+L E+   QRED 
Sbjct: 6   TNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDA 65

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARY 116
           VNSLAYEA+ RLRDPVYGC+G I+LLQ ++ +LQ DL+ AK+ L++Y
Sbjct: 66  VNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]
BLAST of CmaCh15G001400 vs. TAIR10
Match: AT3G27650.1 (AT3G27650.1 LOB domain-containing protein 25)

HSP 1 Score: 147.5 bits (371), Expect = 7.9e-36
Identity = 70/108 (64.81%), Postives = 86/108 (79.63%), Query Frame = 1 

Query: 9   SSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDT 68
           ++S CAACK L+R+CT  C+FAPYF  +EP KFA VH++FGASNVSKIL EV   QRED 
Sbjct: 36  TNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDA 95

Query: 69  VNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYA 117
           VNSLAYEAEARL+DPVYGC+GAI++LQ +++ LQ +L    A L RYA
Sbjct: 96  VNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]
BLAST of CmaCh15G001400 vs. TAIR10
Match: AT5G63090.2 (AT5G63090.2 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-34
Identity = 69/106 (65.09%), Postives = 83/106 (78.30%), Query Frame = 1 

Query: 10  SSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTV 69
           +S CAACK L+R+C P CIFAPYF  +EP KFA VHK+FGASNV+K+L E+   QRED V
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 70  NSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARY 116
           NSLAYEAEAR+RDPVYGC+GAI+ LQ ++  LQ +L  A A LA Y
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

[Close]
BLAST of CmaCh15G001400 vs. NCBI nr
Match: gi|449441290|ref|XP_004138415.1| (PREDICTED: LOB domain-containing protein 21 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.3e-77
Identity = 159/183 (86.89%), Postives = 162/183 (88.52%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG HETRSSSSCAACKLLKRRC PTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLA+AKARLARYA    
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYA---- 120

Query: 121 NYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLSIAAGQSSS-AITQYGYLCDFTHFPYP 180
           N NT SSSSSSS        +ENCVVNM YGGLS +A QSSS  ITQYGYLCDFTHFPYP
Sbjct: 121 NNNTSSSSSSSS-------CVENCVVNMSYGGLSFSAEQSSSDDITQYGYLCDFTHFPYP 172

Query: 181 FKA 183
           FKA
Sbjct: 181 FKA 172

[Close]
BLAST of CmaCh15G001400 vs. NCBI nr
Match: gi|659081716|ref|XP_008441477.1| (PREDICTED: LOB domain-containing protein 21-like [Cucumis melo])

HSP 1 Score: 295.4 bits (755), Expect = 6.7e-77
Identity = 160/183 (87.43%), Postives = 163/183 (89.07%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           MRG HETRSSSSCAACKLLKRRC PTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV
Sbjct: 1   MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLA+AKARLARYA   H
Sbjct: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYA---H 120

Query: 121 NYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLSIAAGQSSS-AITQYGYLCDFTHFPYP 180
           N NT SSSSSSS +       ENCVVNM YGGLS +A QSSS  ITQYGYLCDFTHFPYP
Sbjct: 121 N-NTSSSSSSSSCA-------ENCVVNMSYGGLSFSAEQSSSDDITQYGYLCDFTHFPYP 172

Query: 181 FKA 183
           FKA
Sbjct: 181 FKA 172

[Close]
BLAST of CmaCh15G001400 vs. NCBI nr
Match: gi|700190595|gb|KGN45799.1| (hypothetical protein Csa_6G012240 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 9.0e-58
Identity = 127/149 (85.23%), Postives = 130/149 (87.25%), Query Frame = 1 

Query: 35  SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 94
           SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL
Sbjct: 6   SDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALL 65

Query: 95  QTKMVELQHDLAIAKARLARYADSDHNYNTFSSSSSSSSSPSSLGVLENCVVNMPYGGLS 154
           QTKMVELQHDLA+AKARLARYA    N NT SSSSSSS        +ENCVVNM YGGLS
Sbjct: 66  QTKMVELQHDLALAKARLARYA----NNNTSSSSSSSS-------CVENCVVNMSYGGLS 125

Query: 155 IAAGQSSS-AITQYGYLCDFTHFPYPFKA 183
            +A QSSS  ITQYGYLCDFTHFPYPFKA
Sbjct: 126 FSAEQSSSDDITQYGYLCDFTHFPYPFKA 143

[Close]
BLAST of CmaCh15G001400 vs. NCBI nr
Match: gi|702424900|ref|XP_010067553.1| (PREDICTED: LOB domain-containing protein 21 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 223.4 bits (568), Expect = 3.2e-55
Identity = 127/181 (70.17%), Postives = 142/181 (78.45%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           M+G HE RSSSSCAACKLLKR+CT TCIFAPYFRSDEPKKFAKVHKVFGASNVSKIL EV
Sbjct: 10  MKG-HEPRSSSSCAACKLLKRKCTSTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEV 69

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ KM+ELQHDLAIA+ARLARY     
Sbjct: 70  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHDLAIARARLARY----- 129

Query: 121 NYNTFSSSSSSSSSPSSLGVLENCVVNMP-YGGLSIAAGQSSSAITQYGYLCDFTHFPYP 180
                S+SS S     ++G++     +MP   G++ + GQSSS +TQ   + DF  FPY 
Sbjct: 130 TVPAVSTSSPSVLMDENVGMVS--FYDMPCCSGVNESFGQSSSQLTQVQPMNDFGQFPYI 182

[Close]
BLAST of CmaCh15G001400 vs. NCBI nr
Match: gi|702424894|ref|XP_010067552.1| (PREDICTED: LOB domain-containing protein 21 isoform X1 [Eucalyptus grandis])

HSP 1 Score: 223.4 bits (568), Expect = 3.2e-55
Identity = 127/181 (70.17%), Postives = 142/181 (78.45%), Query Frame = 1 

Query: 1   MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEV 60
           M+G HE RSSSSCAACKLLKR+CT TCIFAPYFRSDEPKKFAKVHKVFGASNVSKIL EV
Sbjct: 25  MKG-HEPRSSSSCAACKLLKRKCTSTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILVEV 84

Query: 61  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLAIAKARLARYADSDH 120
           PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQ KM+ELQHDLAIA+ARLARY     
Sbjct: 85  PEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMLELQHDLAIARARLARY----- 144

Query: 121 NYNTFSSSSSSSSSPSSLGVLENCVVNMP-YGGLSIAAGQSSSAITQYGYLCDFTHFPYP 180
                S+SS S     ++G++     +MP   G++ + GQSSS +TQ   + DF  FPY 
Sbjct: 145 TVPAVSTSSPSVLMDENVGMVS--FYDMPCCSGVNESFGQSSSQLTQVQPMNDFGQFPYI 197

The following BLAST results are available for this feature:
BLAST of CmaCh15G001400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD21_ARATH3.9e-4563.35LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1[more]
LBD36_ARATH6.3e-3565.42LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1[more]
LBD6_ARATH8.2e-3563.55LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1[more]
LBD25_ARATH1.4e-3464.81LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3[more]
LOB_ARATH2.0e-3365.09Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1[more]
BLAST of CmaCh15G001400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAD8_CUCSA6.3e-5885.23Uncharacterized protein OS=Cucumis sativus GN=Csa_6G012240 PE=4 SV=1[more]
A0A059BI25_EUCGR2.2e-5570.17Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03078 PE=4 SV=1[more]
W9SFX1_9ROSA3.8e-5576.92Uncharacterized protein OS=Morus notabilis GN=L484_009899 PE=4 SV=1[more]
A0A067FNC5_CITSI2.3e-5265.59Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036565mg PE=4 SV=1[more]
V4T709_9ROSI2.3e-5265.59Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032862mg PE=4 SV=1[more]
BLAST of CmaCh15G001400 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G11090.12.2e-4663.35 LOB domain-containing protein 21[more]
AT5G66870.13.6e-3665.42 ASYMMETRIC LEAVES 2-like 1[more]
AT1G65620.14.6e-3663.55 Lateral organ boundaries (LOB) domain family protein[more]
AT3G27650.17.9e-3664.81 LOB domain-containing protein 25[more]
AT5G63090.21.1e-3465.09 Lateral organ boundaries (LOB) domain family protein[more]
BLAST of CmaCh15G001400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441290|ref|XP_004138415.1|2.3e-7786.89PREDICTED: LOB domain-containing protein 21 [Cucumis sativus][more]
gi|659081716|ref|XP_008441477.1|6.7e-7787.43PREDICTED: LOB domain-containing protein 21-like [Cucumis melo][more]
gi|700190595|gb|KGN45799.1|9.0e-5885.23hypothetical protein Csa_6G012240 [Cucumis sativus][more]
gi|702424900|ref|XP_010067553.1|3.2e-5570.17PREDICTED: LOB domain-containing protein 21 isoform X2 [Eucalyptus grandis][more]
gi|702424894|ref|XP_010067552.1|3.2e-5570.17PREDICTED: LOB domain-containing protein 21 isoform X1 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G001400.1CmaCh15G001400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 12..109
score: 3.4
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 11..112
score: 25
NoneNo IPR availableunknownCoilCoilcoord: 91..111
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 5..116
score: 6.8
NoneNo IPR availablePANTHERPTHR31301:SF24LOB DOMAIN-CONTAINING PROTEIN 21coord: 5..116
score: 6.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G001400Cucsa.136740Cucumber (Gy14) v1cgycmaB0369
CmaCh15G001400Csa6G012240Cucumber (Chinese Long) v2cmacuB309
CmaCh15G001400MELO3C008309Melon (DHL92) v3.5.1cmameB267
CmaCh15G001400ClCG11G006030Watermelon (Charleston Gray)cmawcgB252
CmaCh15G001400CSPI06G01790Wild cucumber (PI 183967)cmacpiB314
CmaCh15G001400CmoCh15G001560Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G001400Lsi03G002970Bottle gourd (USVL1VR-Ls)cmalsiB276
CmaCh15G001400Cp4.1LG01g21850Cucurbita pepo (Zucchini)cmacpeB317
CmaCh15G001400MELO3C008309.2Melon (DHL92) v3.6.1cmamedB306
CmaCh15G001400CsaV3_6G001930Cucumber (Chinese Long) v3cmacucB0363
CmaCh15G001400Cla97C11G212950Watermelon (97103) v2cmawmbB296
CmaCh15G001400Bhi04G001877Wax gourdcmawgoB0397
CmaCh15G001400CsGy6G001890Cucumber (Gy14) v2cgybcmaB741
CmaCh15G001400Carg02132Silver-seed gourdcarcmaB0362
CmaCh15G001400Carg05968Silver-seed gourdcarcmaB0030
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh15G001400CmaCh04G028940Cucurbita maxima (Rimu)cmacmaB324
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G001400Watermelon (97103) v2cmawmbB303
CmaCh15G001400Watermelon (97103) v2cmawmbB315
CmaCh15G001400Cucurbita maxima (Rimu)cmacmaB326
CmaCh15G001400Cucurbita maxima (Rimu)cmacmaB336
CmaCh15G001400Cucumber (Gy14) v1cgycmaB0353
CmaCh15G001400Cucurbita moschata (Rifu)cmacmoB300
CmaCh15G001400Cucurbita moschata (Rifu)cmacmoB308
CmaCh15G001400Watermelon (97103) v1cmawmB283
CmaCh15G001400Cucurbita pepo (Zucchini)cmacpeB305
CmaCh15G001400Cucurbita pepo (Zucchini)cmacpeB320
CmaCh15G001400Bottle gourd (USVL1VR-Ls)cmalsiB270
CmaCh15G001400Bottle gourd (USVL1VR-Ls)cmalsiB285
CmaCh15G001400Cucumber (Gy14) v2cgybcmaB490
CmaCh15G001400Melon (DHL92) v3.6.1cmamedB324
CmaCh15G001400Silver-seed gourdcarcmaB0774
CmaCh15G001400Silver-seed gourdcarcmaB0943
CmaCh15G001400Cucumber (Chinese Long) v3cmacucB0339
CmaCh15G001400Cucumber (Chinese Long) v3cmacucB0350