Csa5G607970 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G607970
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 23146804 .. 23147557 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGTTTCTTGTAATATTCTCATAAAGACTTTTTTCTTGGGTCTTGTCTGGATAAGATATTTCCCACCAAAAACAGCTTCAAAATAAACTCTTCTACGGGTGATATAAATAATATCGAAAGAACATGGATTGGCCATGAAAGTTCCCATATATTTTCTTACAATGAAGAACAGAAGAGATATCAATAAAAGTCCAGATACTTGTTTTGCCCAGCATTTCCATATCCTTGGTAAGACATGTTCAAGCTTGGACATTTCAACCAATCTCCTGTATAGTATATTGTGTTTATCCTTCAAAACAGTCACCCTTATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCTTGTACCTGCTATAATCTTCAAAGGCCTTCCATCAACATTTCATGCCTTTCTACTTTCAATTGTGATGGCATTCTCAGGCGCATTCAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATTGCCAAGTTTTGCAGCTACTATTCTTTGGGATTTATGGTCTCAGCTGTAGTTTTATTTTTTTGGGCTGTGTTTCAGACAGTTTTTAACTTGAGACAATGGCATGGTTAAGATATGTTTGGACGTTTCCCTACTTCGTTTCTCTCTTGACCATATTGGTTTCAGGGGGGAGCTTCTCGGACTTTTCCTGTAACAATAAAGTTCTACAATCTAAGACTTGTAACAAACAAAAGGGAATCTTTTGAATTATTTTCCAATCCAAGACCTTGTGTTTTTGTCAAGTAAACA

mRNA sequence

ATGAAAGTTCCCATATATTTTCTTACAATGAAGAACAGAAGAGATATCAATAAAAGTCCAGATACTTGTTTTGCCCAGCATTTCCATATCCTTGGTAAGACATGTTCAAGCTTGGACATTTCAACCAATCTCCTGTATAGTATATTGTGTTTATCCTTCAAAACAGTCACCCTTATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCTTGTACCTGCTATAATCTTCAAAGGCCTTCCATCAACATTTCATGCCTTTCTACTTTCAATTGTGATGGCATTCTCAGGCGCATTCAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATTGCCAAGTTTTGCAGCTACTATTCTTTGGGATTTATGGTCTCAGCTGTAGTTTTATTTTTTTGGGCTGTGTTTCAGACAGTTTTTAACTTGAGACAATGGCATGGTTAA

Coding sequence (CDS)

ATGAAAGTTCCCATATATTTTCTTACAATGAAGAACAGAAGAGATATCAATAAAAGTCCAGATACTTGTTTTGCCCAGCATTTCCATATCCTTGGTAAGACATGTTCAAGCTTGGACATTTCAACCAATCTCCTGTATAGTATATTGTGTTTATCCTTCAAAACAGTCACCCTTATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCTTGTACCTGCTATAATCTTCAAAGGCCTTCCATCAACATTTCATGCCTTTCTACTTTCAATTGTGATGGCATTCTCAGGCGCATTCAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATTGCCAAGTTTTGCAGCTACTATTCTTTGGGATTTATGGTCTCAGCTGTAGTTTTATTTTTTTGGGCTGTGTTTCAGACAGTTTTTAACTTGAGACAATGGCATGGTTAA

Protein sequence

MKVPIYFLTMKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVLFFWAVFQTVFNLRQWHG*
Homology
[Close]
BLAST of Csa5G607970 vs. TrEMBL
Match: A0A0A0KT20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607970 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MKVPIYFLTMKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLIL 60
           MKVPIYFLTMKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLIL
Sbjct: 1   MKVPIYFLTMKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLIL 60

Query: 61  LFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSL 120
           LFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSL
Sbjct: 61  LFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSL 120

Query: 121 GFMVSAVVLFFWAVFQTVFNLRQWHG 147
           GFMVSAVVLFFWAVFQTVFNLRQWHG
Sbjct: 121 GFMVSAVVLFFWAVFQTVFNLRQWHG 146

[Close]
BLAST of Csa5G607970 vs. TrEMBL
Match: A0A061E956_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011399 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.4e-20
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 1 

Query: 24  FAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPST 83
           F  H     +  SS+ + T +L SIL +SF   T+++L P+E V G+ VP I+FKG P+T
Sbjct: 15  FYPHHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPAT 74

Query: 84  FHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVLFFWAV 135
           FHAF + I+ AFSGAF ALM   N P+IA  C  YS+  M SA+ L  WAV
Sbjct: 75  FHAFTICIIFAFSGAFCALM-TPNSPRIASLCGCYSIASMASAIGLLIWAV 124

[Close]
BLAST of Csa5G607970 vs. TrEMBL
Match: D7TA96_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g00760 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.9e-19
Identity = 46/97 (47.42%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 40  ISTNLLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAF 99
           IST++L +IL +SF T  +++  P+EQV  + VP +IFKGLPS FHAF++S++ AF+GAF
Sbjct: 32  ISTSILEAILFISFATANILVALPFEQVESHRVPTVIFKGLPSAFHAFVISLIFAFNGAF 91

Query: 100 NALMLATNKPKIAKFCSYYSLGFMVSAVVLFFWAVFQ 137
             LM+   +PKIA+  SY+S+  M S++ +  +A+FQ
Sbjct: 92  CGLMIHNYQPKIARIFSYHSIVSMASSICILVFAIFQ 128

[Close]
BLAST of Csa5G607970 vs. TrEMBL
Match: K7K7Z1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G125900 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1 

Query: 44  LLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 103
           LL  +L L FK +T++L  PYE ++ N +P I+FKG P TFHAF+  I+ AFSGA NAL 
Sbjct: 21  LLECVLGLCFKVITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL- 80

Query: 104 LATNKPKIAKFCSYYSLGFMVSAVVLFFWAVFQTVFN 141
           +A NK + ++ C YY++  M SA+ +  WAV  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASALAILLWAVCCTGIN 116

[Close]
BLAST of Csa5G607970 vs. TrEMBL
Match: A0A0B2R6B5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014734 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-17
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1 

Query: 44  LLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 103
           LL  +L L FK +T++L  PYE ++ N +P I+FKG P TFHAF+  I+ AFSGA NAL 
Sbjct: 21  LLECVLGLCFKVITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL- 80

Query: 104 LATNKPKIAKFCSYYSLGFMVSAVVLFFWAVFQTVFN 141
           +A NK + ++ C YY++  M SA+ +  WAV  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASALAILLWAVCCTGIN 116

[Close]
BLAST of Csa5G607970 vs. NCBI nr
Match: gi|700196832|gb|KGN52009.1| (hypothetical protein Csa_5G607970 [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 4.9e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1 

Query: 1   MKVPIYFLTMKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLIL 60
           MKVPIYFLTMKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLIL
Sbjct: 1   MKVPIYFLTMKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLIL 60

Query: 61  LFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSL 120
           LFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSL
Sbjct: 61  LFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSL 120

Query: 121 GFMVSAVVLFFWAVFQTVFNLRQWHG 147
           GFMVSAVVLFFWAVFQTVFNLRQWHG
Sbjct: 121 GFMVSAVVLFFWAVFQTVFNLRQWHG 146

[Close]
BLAST of Csa5G607970 vs. NCBI nr
Match: gi|590698395|ref|XP_007045703.1| (Uncharacterized protein TCM_011399 [Theobroma cacao])

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 1 

Query: 24  FAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPST 83
           F  H     +  SS+ + T +L SIL +SF   T+++L P+E V G+ VP I+FKG P+T
Sbjct: 15  FYPHHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPAT 74

Query: 84  FHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVLFFWAV 135
           FHAF + I+ AFSGAF ALM   N P+IA  C  YS+  M SA+ L  WAV
Sbjct: 75  FHAFTICIIFAFSGAFCALM-TPNSPRIASLCGCYSIASMASAIGLLIWAV 124

[Close]
BLAST of Csa5G607970 vs. NCBI nr
Match: gi|297738217|emb|CBI27418.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 46/97 (47.42%), Postives = 71/97 (73.20%), Query Frame = 1 

Query: 40  ISTNLLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAF 99
           IST++L +IL +SF T  +++  P+EQV  + VP +IFKGLPS FHAF++S++ AF+GAF
Sbjct: 32  ISTSILEAILFISFATANILVALPFEQVESHRVPTVIFKGLPSAFHAFVISLIFAFNGAF 91

Query: 100 NALMLATNKPKIAKFCSYYSLGFMVSAVVLFFWAVFQ 137
             LM+   +PKIA+  SY+S+  M S++ +  +A+FQ
Sbjct: 92  CGLMIHNYQPKIARIFSYHSIVSMASSICILVFAIFQ 128

[Close]
BLAST of Csa5G607970 vs. NCBI nr
Match: gi|356499970|ref|XP_003518808.1| (PREDICTED: uncharacterized protein LOC100777541 [Glycine max])

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 46/97 (47.42%), Postives = 64/97 (65.98%), Query Frame = 1 

Query: 44  LLYSILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 103
           LL  +L L FK +T++L  PYE ++ N +P I+FKG P TFHAF+  I+ AFSGA NAL 
Sbjct: 21  LLECVLGLCFKVITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL- 80

Query: 104 LATNKPKIAKFCSYYSLGFMVSAVVLFFWAVFQTVFN 141
           +A NK + ++ C YY++  M SA+ +  WAV  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASALAILLWAVCCTGIN 116

[Close]
BLAST of Csa5G607970 vs. NCBI nr
Match: gi|255637939|gb|ACU19286.1| (unknown [Glycine max])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 1 

Query: 48  ILCLSFKTVTLILLFPYEQVNGNLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATN 107
           +L L FK +T++L  PYE ++ N +P I+FKG P TFHAF+  I+ AFSGA NAL +A N
Sbjct: 25  VLGLCFKVITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL-VAFN 84

Query: 108 KPKIAKFCSYYSLGFMVSAVVLFFWAVFQTVFN 141
           K + ++ C YY++  M SA+ +  WAV  T  N
Sbjct: 85  KSRFSRLCGYYAMASMASALAILLWAVCCTGIN 116

The following BLAST results are available for this feature:
BLAST of Csa5G607970 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT20_CUCSA3.4e-78100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607970 PE=4 SV=1[more]
A0A061E956_THECC9.4e-2047.75Uncharacterized protein OS=Theobroma cacao GN=TCM_011399 PE=4 SV=1[more]
D7TA96_VITVI7.9e-1947.42Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0010g00760 PE=4 SV=... [more]
K7K7Z1_SOYBN2.0e-1747.42Uncharacterized protein OS=Glycine max GN=GLYMA_02G125900 PE=4 SV=1[more]
A0A0B2R6B5_GLYSO2.0e-1747.42Uncharacterized protein OS=Glycine soja GN=glysoja_014734 PE=4 SV=1[more]
BLAST of Csa5G607970 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196832|gb|KGN52009.1|4.9e-78100.00hypothetical protein Csa_5G607970 [Cucumis sativus][more]
gi|590698395|ref|XP_007045703.1|1.3e-1947.75Uncharacterized protein TCM_011399 [Theobroma cacao][more]
gi|297738217|emb|CBI27418.3|1.1e-1847.42unnamed protein product [Vitis vinifera][more]
gi|356499970|ref|XP_003518808.1|2.8e-1747.42PREDICTED: uncharacterized protein LOC100777541 [Glycine max][more]
gi|255637939|gb|ACU19286.1|1.1e-1647.31unknown [Glycine max][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU084537cucumber EST collection version 3.0transcribed_cluster
CU176359cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G607970.1Csa5G607970.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU084537CU084537transcribed_cluster
CU176359CU176359transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G607970Cla020331Watermelon (97103) v1cuwmB401
Csa5G607970ClCG05G023400Watermelon (Charleston Gray)cuwcgB394
Csa5G607970Lsi04G003270Bottle gourd (USVL1VR-Ls)culsiB368
Csa5G607970Cla97C05G105350Watermelon (97103) v2cuwmbB383
Csa5G607970CSPI05G24590Wild cucumber (PI 183967)cpicuB239
Csa5G607970CmaCh04G015670Cucurbita maxima (Rimu)cmacuB751
Csa5G607970CmoCh04G016400Cucurbita moschata (Rifu)cmocuB741
Csa5G607970Cp4.1LG01g13200Cucurbita pepo (Zucchini)cpecuB442
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G607970Cucurbita pepo (Zucchini)cpecuB041
Csa5G607970Cucurbita pepo (Zucchini)cpecuB680
Csa5G607970Bottle gourd (USVL1VR-Ls)culsiB359
Csa5G607970Bottle gourd (USVL1VR-Ls)culsiB383
Csa5G607970Cucumber (Gy14) v2cgybcuB223
Csa5G607970Melon (DHL92) v3.6.1cumedB342
Csa5G607970Melon (DHL92) v3.6.1cumedB359
Csa5G607970Melon (DHL92) v3.6.1cumedB375
Csa5G607970Silver-seed gourdcarcuB0496
Csa5G607970Silver-seed gourdcarcuB0626
Csa5G607970Silver-seed gourdcarcuB0857
Csa5G607970Silver-seed gourdcarcuB1057
Csa5G607970Watermelon (97103) v2cuwmbB390
Csa5G607970Wax gourdcuwgoB474
Csa5G607970Wax gourdcuwgoB512
Csa5G607970Wax gourdcuwgoB526
Csa5G607970Cucumber (Chinese Long) v2cucuB159
Csa5G607970Cucumber (Gy14) v1cgycuB338
Csa5G607970Cucumber (Gy14) v1cgycuB410
Csa5G607970Cucurbita maxima (Rimu)cmacuB136
Csa5G607970Cucurbita maxima (Rimu)cmacuB417
Csa5G607970Cucurbita moschata (Rifu)cmocuB122
Csa5G607970Cucurbita moschata (Rifu)cmocuB406
Csa5G607970Melon (DHL92) v3.5.1cumeB377
Csa5G607970Melon (DHL92) v3.5.1cumeB366
Csa5G607970Melon (DHL92) v3.5.1cumeB392
Csa5G607970Watermelon (Charleston Gray)cuwcgB355
Csa5G607970Watermelon (Charleston Gray)cuwcgB400
Csa5G607970Watermelon (97103) v1cuwmB439
Csa5G607970Watermelon (97103) v1cuwmB441