CmaCh04G015670 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G015670
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 7966975 .. 7967388 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACGCTGGAGCTATCAATATGAGTCCAGAGACTTCTTTTCCCCAGCATTTCCACATCCTTGGTAAGGCATGTTCAAGATTGGACATTTCAACCAATCTGATGTACTGTATATTGTGCTGCTCCTTCAAAACAGTTACCCTCATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCCTGTGCCTACTATAATCTTCAAAGGCCTTCCATCAACTTTCCATGCCTTTCTACTTTCAACTGTGATGGCATTCTCAGGCGCATTTAACGCCTTGATGCTTTCTGCTAATAAGCCAAAAATTGCCAGGTTTTGCAGCTACTATTCTATGGCATTTATGGCCTCAGCTGTAGTTTTATTGATTTGGGCTGTGTATCAGACGGTTTTCAACCGGAGACAATGGCAGGATTAA

mRNA sequence

ATGAAGAACGCTGGAGCTATCAATATGAGTCCAGAGACTTCTTTTCCCCAGCATTTCCACATCCTTGTTACCCTCATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCCTGTGCCTACTATAATCTTCAAAGGCCTTCCATCAACTTTCCATGCCTTTCTACTTTCAACTGTGATGGCATTCTCAGGCGCATTTAACGCCTTGATGCTTTCTGCTAATAAGCCAAAAATTGCCAGGTTTTGCAGCTACTATTCTATGGCATTTATGGCCTCAGCTGTAGTTTTATTGATTTGGGCTGTGTATCAGACGGTTTTCAACCGGAGACAATGGCAGGATTAA

Coding sequence (CDS)

ATGAAGAACGCTGGAGCTATCAATATGAGTCCAGAGACTTCTTTTCCCCAGCATTTCCACATCCTTGTTACCCTCATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCCTGTGCCTACTATAATCTTCAAAGGCCTTCCATCAACTTTCCATGCCTTTCTACTTTCAACTGTGATGGCATTCTCAGGCGCATTTAACGCCTTGATGCTTTCTGCTAATAAGCCAAAAATTGCCAGGTTTTGCAGCTACTATTCTATGGCATTTATGGCCTCAGCTGTAGTTTTATTGATTTGGGCTGTGTATCAGACGGTTTTCAACCGGAGACAATGGCAGGATTAA

Protein sequence

MKNAGAINMSPETSFPQHFHILVTLILLFPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVLLIWAVYQTVFNRRQWQD

Homology

[Close]

BLAST of CmaCh04G015670 vs. TrEMBL
Match: A0A0A0KT20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607970 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.1e-39
Identity = 91/135 (67.41%), Postives = 96/135 (71.11%), Query Frame = 1


Query: 1   MKNAGAINMSPETSFPQHFHIL------------------------VTLILLFPYEQVNG 60
           MKN   IN SP+T F QHFHIL                        VTLILLFPYEQVNG
Sbjct: 10  MKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNG 69

Query: 61  NPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 112
           N VP IIFKGLPSTFHAFLLS VMAFSGAFNALML+ NKPKIA+FCSYYS+ FM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 129

[Close]

BLAST of CmaCh04G015670 vs. TrEMBL
Match: I1J684_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G069000 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.4e-17
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 22  LVTLILLFPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARF 81
           ++T++L  PYE ++ NPVPTI+FKG P TFHAF++  + AFSGA NAL ++ NK + +R 
Sbjct: 32  VITILLQLPYEYIDNNPVPTIVFKGRPRTFHAFIICIIFAFSGATNAL-VAFNKSRFSRL 91

Query: 82  CSYYSMAFMASAVVLLIWAVYQTVFN 108
           C YY+MA MASA+ +L+WA+  T  N
Sbjct: 92  CGYYAMASMASALAILLWALCCTCIN 116

[Close]

BLAST of CmaCh04G015670 vs. TrEMBL
Match: A0A0B2R972_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_030742 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-17
Identity = 44/86 (51.16%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 22  LVTLILLFPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARF 81
           ++T++L  PYE ++ NPVPTI+FKG P TFHAF++  + AFSGA NAL ++ NK + +R 
Sbjct: 32  VITILLQLPYEYIDNNPVPTIVFKGRPRTFHAFIICIIFAFSGATNAL-VAFNKSRFSRL 91

Query: 82  CSYYSMAFMASAVVLLIWAVYQTVFN 108
           C YY+MA MAS++ +L+WA+  T  N
Sbjct: 92  CGYYAMASMASSLAILLWALCCTCIN 116

[Close]

BLAST of CmaCh04G015670 vs. TrEMBL
Match: C6TBT4_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-17
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 22  LVTLILLFPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARF 81
           ++T++L  PYE ++ NP+PTI+FKG P TFHAF+   + AFSGA NAL ++ NK + +R 
Sbjct: 32  VITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL-VAFNKSRFSRL 91

Query: 82  CSYYSMAFMASAVVLLIWAVYQTVFN 108
           C YY+MA MASA+ +L+WAV  T  N
Sbjct: 92  CGYYAMASMASALAILLWAVCCTGIN 116

[Close]

BLAST of CmaCh04G015670 vs. TrEMBL
Match: A0A0B2R6B5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014734 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 7.5e-17
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 22  LVTLILLFPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARF 81
           ++T++L  PYE ++ NP+PTI+FKG P TFHAF+   + AFSGA NAL ++ NK + +R 
Sbjct: 32  VITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL-VAFNKSRFSRL 91

Query: 82  CSYYSMAFMASAVVLLIWAVYQTVFN 108
           C YY+MA MASA+ +L+WAV  T  N
Sbjct: 92  CGYYAMASMASALAILLWAVCCTGIN 116

[Close]

BLAST of CmaCh04G015670 vs. NCBI nr
Match: gi|700196832|gb|KGN52009.1| (hypothetical protein Csa_5G607970 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 1.5e-39
Identity = 91/135 (67.41%), Postives = 96/135 (71.11%), Query Frame = 1


Query: 1   MKNAGAINMSPETSFPQHFHIL------------------------VTLILLFPYEQVNG 60
           MKN   IN SP+T F QHFHIL                        VTLILLFPYEQVNG
Sbjct: 10  MKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNG 69

Query: 61  NPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 112
           N VP IIFKGLPSTFHAFLLS VMAFSGAFNALML+ NKPKIA+FCSYYS+ FM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 129

[Close]

BLAST of CmaCh04G015670 vs. NCBI nr
Match: gi|947127342|gb|KRH75196.1| (hypothetical protein GLYMA_01G069000 [Glycine max])

HSP 1 Score: 95.9 bits (237), Expect = 4.8e-17
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 22  LVTLILLFPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARF 81
           ++T++L  PYE ++ NPVPTI+FKG P TFHAF++  + AFSGA NAL ++ NK + +R 
Sbjct: 32  VITILLQLPYEYIDNNPVPTIVFKGRPRTFHAFIICIIFAFSGATNAL-VAFNKSRFSRL 91

Query: 82  CSYYSMAFMASAVVLLIWAVYQTVFN 108
           C YY+MA MASA+ +L+WA+  T  N
Sbjct: 92  CGYYAMASMASALAILLWALCCTCIN 116

[Close]

BLAST of CmaCh04G015670 vs. NCBI nr
Match: gi|734399951|gb|KHN31091.1| (hypothetical protein glysoja_030742 [Glycine soja])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 44/86 (51.16%), Postives = 64/86 (74.42%), Query Frame = 1


Query: 22  LVTLILLFPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARF 81
           ++T++L  PYE ++ NPVPTI+FKG P TFHAF++  + AFSGA NAL ++ NK + +R 
Sbjct: 32  VITILLQLPYEYIDNNPVPTIVFKGRPRTFHAFIICIIFAFSGATNAL-VAFNKSRFSRL 91

Query: 82  CSYYSMAFMASAVVLLIWAVYQTVFN 108
           C YY+MA MAS++ +L+WA+  T  N
Sbjct: 92  CGYYAMASMASSLAILLWALCCTCIN 116

[Close]

BLAST of CmaCh04G015670 vs. NCBI nr
Match: gi|356499970|ref|XP_003518808.1| (PREDICTED: uncharacterized protein LOC100777541 [Glycine max])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 22  LVTLILLFPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARF 81
           ++T++L  PYE ++ NP+PTI+FKG P TFHAF+   + AFSGA NAL ++ NK + +R 
Sbjct: 32  VITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL-VAFNKSRFSRL 91

Query: 82  CSYYSMAFMASAVVLLIWAVYQTVFN 108
           C YY+MA MASA+ +L+WAV  T  N
Sbjct: 92  CGYYAMASMASALAILLWAVCCTGIN 116

[Close]

BLAST of CmaCh04G015670 vs. NCBI nr
Match: gi|255637939|gb|ACU19286.1| (unknown [Glycine max])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 22  LVTLILLFPYEQVNGNPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARF 81
           ++T++L  PYE ++ NP+PTI+FKG P TFHAF+   + AFSGA NAL ++ NK + +R 
Sbjct: 32  VITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL-VAFNKSRFSRL 91

Query: 82  CSYYSMAFMASAVVLLIWAVYQTVFN 108
           C YY+MA MASA+ +L+WAV  T  N
Sbjct: 92  CGYYAMASMASALAILLWAVCCTGIN 116

The following BLAST results are available for this feature:

BLAST of CmaCh04G015670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT20_CUCSA	1.1e-39	67.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607970 PE=4 SV=1	[more]
I1J684_SOYBN	3.4e-17	52.33	Uncharacterized protein OS=Glycine max GN=GLYMA_01G069000 PE=4 SV=1	[more]
A0A0B2R972_GLYSO	7.5e-17	51.16	Uncharacterized protein OS=Glycine soja GN=glysoja_030742 PE=4 SV=1	[more]
C6TBT4_SOYBN	7.5e-17	52.33	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0B2R6B5_GLYSO	7.5e-17	52.33	Uncharacterized protein OS=Glycine soja GN=glysoja_014734 PE=4 SV=1	[more]

BLAST of CmaCh04G015670 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G015670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196832\|gb\|KGN52009.1\|	1.5e-39	67.41	hypothetical protein Csa_5G607970 [Cucumis sativus]	[more]
gi\|947127342\|gb\|KRH75196.1\|	4.8e-17	52.33	hypothetical protein GLYMA_01G069000 [Glycine max]	[more]
gi\|734399951\|gb\|KHN31091.1\|	1.1e-16	51.16	hypothetical protein glysoja_030742 [Glycine soja]	[more]
gi\|356499970\|ref\|XP_003518808.1\|	1.1e-16	52.33	PREDICTED: uncharacterized protein LOC100777541 [Glycine max]	[more]
gi\|255637939\|gb\|ACU19286.1\|	1.1e-16	52.33	unknown [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G015670.1	CmaCh04G015670.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G015670	Cla020331	Watermelon (97103) v1	cmawmB699
CmaCh04G015670	Csa5G607970	Cucumber (Chinese Long) v2	cmacuB751
CmaCh04G015670	ClCG05G023400	Watermelon (Charleston Gray)	cmawcgB655
CmaCh04G015670	CSPI05G24590	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G015670	CmoCh04G016400	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G015670	Lsi04G003270	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G015670	Cp4.1LG01g13200	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G015670	CsaV3_5G033610	Cucumber (Chinese Long) v3	cmacucB0889
CmaCh04G015670	Cla97C05G105350	Watermelon (97103) v2	cmawmbB758

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G015670	Watermelon (97103) v2	cmawmbB771
CmaCh04G015670	Wax gourd	cmawgoB0893
CmaCh04G015670	Cucurbita maxima (Rimu)	cmacmaB114
CmaCh04G015670	Cucurbita maxima (Rimu)	cmacmaB165
CmaCh04G015670	Cucurbita maxima (Rimu)	cmacmaB402
CmaCh04G015670	Cucumber (Gy14) v1	cgycmaB0801
CmaCh04G015670	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G015670	Wild cucumber (PI 183967)	cmacpiB695
CmaCh04G015670	Cucumber (Chinese Long) v2	cmacuB686
CmaCh04G015670	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G015670	Melon (DHL92) v3.5.1	cmameB673
CmaCh04G015670	Watermelon (Charleston Gray)	cmawcgB666
CmaCh04G015670	Watermelon (97103) v1	cmawmB746
CmaCh04G015670	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G015670	Bottle gourd (USVL1VR-Ls)	cmalsiB693
CmaCh04G015670	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G015670	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G015670	Melon (DHL92) v3.6.1	cmamedB755
CmaCh04G015670	Silver-seed gourd	carcmaB0836
CmaCh04G015670	Silver-seed gourd	carcmaB1170
CmaCh04G015670	Silver-seed gourd	carcmaB1443