ClCG05G023400 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G023400
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 35234477 .. 35234878 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAACACTAGTTACATCAATACAAGTCCAGAGTCTTCTTTTGCCCAGCATTTCCATATCCTTGGTAAGAAATGTTCAAGCTTGGACATTTCAACCAATCTCTTGTACTGTATATTGTGCTTCTCCTTCAAAACAGTCACCCTTATTCTCTTGTTTCCTTATGAGCAAGTGGATGGGAATCCTGTGCCTGCTATAATCTTCAAAGGCCTTCCATCAACATTTCATGCCTTTCTACTCTCAATTGTGATGGCATTCTCAGGCGCATTCAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATTGCCAAGTTTTGCAGCTACTATTCTATGGGATTTATGGCTTCAGCTGTAGTTTTATTGTTTTGGGCTGTGTTTCAGACAGTTTTTAACCTGAGATAA

mRNA sequence

ATGAAAAACACTAGTTACATCAATACAAGTCCAGAGTCTTCTTTTGCCCAGCATTTCCATATCCTTGGTAAGAAATGTTCAAGCTTGGACATTTCAACCAATCTCTTGTACTGTATATTGTGCTTCTCCTTCAAAACAGTCACCCTTATTCTCTTGTTTCCTTATGAGCAAGTGGATGGGAATCCTGTGCCTGCTATAATCTTCAAAGGCCTTCCATCAACATTTCATGCCTTTCTACTCTCAATTGTGATGGCATTCTCAGGCGCATTCAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATTGCCAAGTTTTGCAGCTACTATTCTATGGGATTTATGGCTTCAGCTGTAGTTTTATTGTTTTGGGCTGTGTTTCAGACAGTTTTTAACCTGAGATAA

Coding sequence (CDS)

ATGAAAAACACTAGTTACATCAATACAAGTCCAGAGTCTTCTTTTGCCCAGCATTTCCATATCCTTGGTAAGAAATGTTCAAGCTTGGACATTTCAACCAATCTCTTGTACTGTATATTGTGCTTCTCCTTCAAAACAGTCACCCTTATTCTCTTGTTTCCTTATGAGCAAGTGGATGGGAATCCTGTGCCTGCTATAATCTTCAAAGGCCTTCCATCAACATTTCATGCCTTTCTACTCTCAATTGTGATGGCATTCTCAGGCGCATTCAACGCCTTGATGCTTGCTACTAATAAGCCAAAAATTGCCAAGTTTTGCAGCTACTATTCTATGGGATTTATGGCTTCAGCTGTAGTTTTATTGTTTTGGGCTGTGTTTCAGACAGTTTTTAACCTGAGATAA

Protein sequence

MKNTSYINTSPESSFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVLLFWAVFQTVFNLR
Homology
[Close]
BLAST of ClCG05G023400 vs. TrEMBL
Match: A0A0A0KT20_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607970 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.4e-59
Identity = 118/133 (88.72%), Postives = 122/133 (91.73%), Query Frame = 1 

Query: 1   MKNTSYINTSPESSFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDG 60
           MKN   IN SP++ FAQHFHILGK CSSLDISTNLLY ILC SFKTVTLILLFPYEQV+G
Sbjct: 10  MKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNG 69

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVL 120
           N VPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYS+GFM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 129

Query: 121 LFWAVFQTVFNLR 134
            FWAVFQTVFNLR
Sbjct: 130 FFWAVFQTVFNLR 142

[Close]
BLAST of ClCG05G023400 vs. TrEMBL
Match: K7K7Z1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G125900 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-21
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           LL C+L   FK +T++L  PYE +D NP+P I+FKG P TFHAF+  I+ AFSGA NAL 
Sbjct: 21  LLECVLGLCFKVITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL- 80

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWAVFQTVFN 132
           +A NK + ++ C YY+M  MASA+ +L WAV  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASALAILLWAVCCTGIN 116

[Close]
BLAST of ClCG05G023400 vs. TrEMBL
Match: A0A0B2R6B5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014734 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-21
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           LL C+L   FK +T++L  PYE +D NP+P I+FKG P TFHAF+  I+ AFSGA NAL 
Sbjct: 21  LLECVLGLCFKVITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL- 80

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWAVFQTVFN 132
           +A NK + ++ C YY+M  MASA+ +L WAV  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASALAILLWAVCCTGIN 116

[Close]
BLAST of ClCG05G023400 vs. TrEMBL
Match: A0A061E956_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_011399 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 5.9e-21
Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 1 

Query: 14  SFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPS 73
           +F  H     +  SS+ + T +L  IL  SF   T+++L P+E V G+PVP I+FKG P+
Sbjct: 14  TFYPHHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPA 73

Query: 74  TFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVLLFWAV 126
           TFHAF + I+ AFSGAF ALM   N P+IA  C  YS+  MASA+ LL WAV
Sbjct: 74  TFHAFTICIIFAFSGAFCALM-TPNSPRIASLCGCYSIASMASAIGLLIWAV 124

[Close]
BLAST of ClCG05G023400 vs. TrEMBL
Match: I1J684_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G069000 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.7e-21
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           LL C+L   F  +T++L  PYE +D NPVP I+FKG P TFHAF++ I+ AFSGA NAL 
Sbjct: 21  LLECVLGICFTVITILLQLPYEYIDNNPVPTIVFKGRPRTFHAFIICIIFAFSGATNAL- 80

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWAVFQTVFN 132
           +A NK + ++ C YY+M  MASA+ +L WA+  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASALAILLWALCCTCIN 116

[Close]
BLAST of ClCG05G023400 vs. NCBI nr
Match: gi|700196832|gb|KGN52009.1| (hypothetical protein Csa_5G607970 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 2.1e-59
Identity = 118/133 (88.72%), Postives = 122/133 (91.73%), Query Frame = 1 

Query: 1   MKNTSYINTSPESSFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDG 60
           MKN   IN SP++ FAQHFHILGK CSSLDISTNLLY ILC SFKTVTLILLFPYEQV+G
Sbjct: 10  MKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNG 69

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVL 120
           N VPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYS+GFM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 129

Query: 121 LFWAVFQTVFNLR 134
            FWAVFQTVFNLR
Sbjct: 130 FFWAVFQTVFNLR 142

[Close]
BLAST of ClCG05G023400 vs. NCBI nr
Match: gi|356499970|ref|XP_003518808.1| (PREDICTED: uncharacterized protein LOC100777541 [Glycine max])

HSP 1 Score: 109.4 bits (272), Expect = 4.9e-21
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           LL C+L   FK +T++L  PYE +D NP+P I+FKG P TFHAF+  I+ AFSGA NAL 
Sbjct: 21  LLECVLGLCFKVITILLQLPYEYIDNNPIPTIVFKGRPRTFHAFITCIIFAFSGATNAL- 80

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWAVFQTVFN 132
           +A NK + ++ C YY+M  MASA+ +L WAV  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASALAILLWAVCCTGIN 116

[Close]
BLAST of ClCG05G023400 vs. NCBI nr
Match: gi|590698395|ref|XP_007045703.1| (Uncharacterized protein TCM_011399 [Theobroma cacao])

HSP 1 Score: 108.6 bits (270), Expect = 8.4e-21
Identity = 55/112 (49.11%), Postives = 72/112 (64.29%), Query Frame = 1 

Query: 14  SFAQHFHILGKKCSSLDISTNLLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPS 73
           +F  H     +  SS+ + T +L  IL  SF   T+++L P+E V G+PVP I+FKG P+
Sbjct: 14  TFYPHHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPA 73

Query: 74  TFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSMGFMASAVVLLFWAV 126
           TFHAF + I+ AFSGAF ALM   N P+IA  C  YS+  MASA+ LL WAV
Sbjct: 74  TFHAFTICIIFAFSGAFCALM-TPNSPRIASLCGCYSIASMASAIGLLIWAV 124

[Close]
BLAST of ClCG05G023400 vs. NCBI nr
Match: gi|947127342|gb|KRH75196.1| (hypothetical protein GLYMA_01G069000 [Glycine max])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           LL C+L   F  +T++L  PYE +D NPVP I+FKG P TFHAF++ I+ AFSGA NAL 
Sbjct: 21  LLECVLGICFTVITILLQLPYEYIDNNPVPTIVFKGRPRTFHAFIICIIFAFSGATNAL- 80

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWAVFQTVFN 132
           +A NK + ++ C YY+M  MASA+ +L WA+  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASALAILLWALCCTCIN 116

[Close]
BLAST of ClCG05G023400 vs. NCBI nr
Match: gi|734399951|gb|KHN31091.1| (hypothetical protein glysoja_030742 [Glycine soja])

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 49/97 (50.52%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 35  LLYCILCFSFKTVTLILLFPYEQVDGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           LL C+L   F  +T++L  PYE +D NPVP I+FKG P TFHAF++ I+ AFSGA NAL 
Sbjct: 21  LLECVLGICFTVITILLQLPYEYIDNNPVPTIVFKGRPRTFHAFIICIIFAFSGATNAL- 80

Query: 95  LATNKPKIAKFCSYYSMGFMASAVVLLFWAVFQTVFN 132
           +A NK + ++ C YY+M  MAS++ +L WA+  T  N
Sbjct: 81  VAFNKSRFSRLCGYYAMASMASSLAILLWALCCTCIN 116

The following BLAST results are available for this feature:
BLAST of ClCG05G023400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT20_CUCSA1.4e-5988.72Uncharacterized protein OS=Cucumis sativus GN=Csa_5G607970 PE=4 SV=1[more]
K7K7Z1_SOYBN3.4e-2152.58Uncharacterized protein OS=Glycine max GN=GLYMA_02G125900 PE=4 SV=1[more]
A0A0B2R6B5_GLYSO3.4e-2152.58Uncharacterized protein OS=Glycine soja GN=glysoja_014734 PE=4 SV=1[more]
A0A061E956_THECC5.9e-2149.11Uncharacterized protein OS=Theobroma cacao GN=TCM_011399 PE=4 SV=1[more]
I1J684_SOYBN7.7e-2151.55Uncharacterized protein OS=Glycine max GN=GLYMA_01G069000 PE=4 SV=1[more]
BLAST of ClCG05G023400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196832|gb|KGN52009.1|2.1e-5988.72hypothetical protein Csa_5G607970 [Cucumis sativus][more]
gi|356499970|ref|XP_003518808.1|4.9e-2152.58PREDICTED: uncharacterized protein LOC100777541 [Glycine max][more]
gi|590698395|ref|XP_007045703.1|8.4e-2149.11Uncharacterized protein TCM_011399 [Theobroma cacao][more]
gi|947127342|gb|KRH75196.1|1.1e-2051.55hypothetical protein GLYMA_01G069000 [Glycine max][more]
gi|734399951|gb|KHN31091.1|2.5e-2050.52hypothetical protein glysoja_030742 [Glycine soja][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G023400.1ClCG05G023400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G023400Csa5G607970Cucumber (Chinese Long) v2cuwcgB394
ClCG05G023400Cla020331Watermelon (97103) v1wcgwmB285
ClCG05G023400Cla97C05G105350Watermelon (97103) v2wcgwmbB229
ClCG05G023400CSPI05G24590Wild cucumber (PI 183967)cpiwcgB412
ClCG05G023400CmaCh04G015670Cucurbita maxima (Rimu)cmawcgB655
ClCG05G023400CmoCh04G016400Cucurbita moschata (Rifu)cmowcgB654
ClCG05G023400Lsi04G003270Bottle gourd (USVL1VR-Ls)lsiwcgB283
ClCG05G023400Cp4.1LG01g13200Cucurbita pepo (Zucchini)cpewcgB388
ClCG05G023400CsaV3_5G033610Cucumber (Chinese Long) v3cucwcgB415
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G023400Silver-seed gourdcarwcgB0580
ClCG05G023400Silver-seed gourdcarwcgB0816
ClCG05G023400Silver-seed gourdcarwcgB1016
ClCG05G023400Cucumber (Chinese Long) v3cucwcgB069
ClCG05G023400Watermelon (97103) v2wcgwmbB233
ClCG05G023400Wax gourdwcgwgoB424
ClCG05G023400Wax gourdwcgwgoB467
ClCG05G023400Watermelon (Charleston Gray)wcgwcgB070
ClCG05G023400Watermelon (Charleston Gray)wcgwcgB155
ClCG05G023400Cucumber (Gy14) v1cgywcgB162
ClCG05G023400Cucumber (Gy14) v1cgywcgB498
ClCG05G023400Cucurbita maxima (Rimu)cmawcgB124
ClCG05G023400Cucurbita maxima (Rimu)cmawcgB364
ClCG05G023400Cucurbita moschata (Rifu)cmowcgB358
ClCG05G023400Wild cucumber (PI 183967)cpiwcgB065
ClCG05G023400Melon (DHL92) v3.5.1mewcgB062
ClCG05G023400Melon (DHL92) v3.5.1mewcgB249
ClCG05G023400Watermelon (97103) v1wcgwmB308
ClCG05G023400Cucurbita pepo (Zucchini)cpewcgB045
ClCG05G023400Cucurbita pepo (Zucchini)cpewcgB610
ClCG05G023400Bottle gourd (USVL1VR-Ls)lsiwcgB245
ClCG05G023400Bottle gourd (USVL1VR-Ls)lsiwcgB367
ClCG05G023400Cucumber (Gy14) v2cgybwcgB359
ClCG05G023400Cucumber (Gy14) v2cgybwcgB363
ClCG05G023400Melon (DHL92) v3.6.1medwcgB061
ClCG05G023400Melon (DHL92) v3.6.1medwcgB241