Csa5G605220 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G605220
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 22726803 .. 22727220 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACCAAACCCAACACTTGGTTATGAGTTTTTTCCTTGTCTCTTTACTGATCATCTTCTTCAATACTGTCTCTGCATCAAGTATACAATCCTCAAACTTTGTTTAGTGAAATTACTTCCTTTAAAATTCTTACCTCATCTTAATAAGTCTCCCTATTCCTTATCCACAGGGGCAACAGTCATGATCCATCTTGGTCAAGACTTTCCAGCTTCCCAAGCTACAAACCAGGTATATATAAATATATATGTACACTCAATTTATAGAAATGATTTAGGCCTGATCGATTTCTTCAATGGCAGAAGAATCAGCCACTGGAGAATTTGTGGAATGGCAGAATGGATTTGCAGTTCAATGACTATCAAATATTTGGAGCTAATCCTCGACATACTCCAAAGCCAACCGGGAAAGTCTGA

mRNA sequence

ATGGCAGACCAAACCCAACACTTGGTTATGAGTTTTTTCCTTGTCTCTTTACTGATCATCTTCTTCAATACTGTCTCTGCATCAAGGGCAACAGTCATGATCCATCTTGGTCAAGACTTTCCAGCTTCCCAAGCTACAAACCAGAAGAATCAGCCACTGGAGAATTTGTGGAATGGCAGAATGGATTTGCAGTTCAATGACTATCAAATATTTGGAGCTAATCCTCGACATACTCCAAAGCCAACCGGGAAAGTCTGA

Coding sequence (CDS)

ATGGCAGACCAAACCCAACACTTGGTTATGAGTTTTTTCCTTGTCTCTTTACTGATCATCTTCTTCAATACTGTCTCTGCATCAAGGGCAACAGTCATGATCCATCTTGGTCAAGACTTTCCAGCTTCCCAAGCTACAAACCAGAAGAATCAGCCACTGGAGAATTTGTGGAATGGCAGAATGGATTTGCAGTTCAATGACTATCAAATATTTGGAGCTAATCCTCGACATACTCCAAAGCCAACCGGGAAAGTCTGA

Protein sequence

MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGRMDLQFNDYQIFGANPRHTPKPTGKV*

Homology

[Close]

BLAST of Csa5G605220 vs. TrEMBL
Match: A0A0A0KQN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605220 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.5e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
          MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of Csa5G605220 vs. TrEMBL
Match: B9S8Y1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836660 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-06
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1


Query: 8  LVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGRMDLQFND 67
          LV+   + S L+   N  S SRA  + H GQ  P+S   N   Q +  L NGR D++ ND
Sbjct: 10 LVIILLVFSQLLFSLNAASTSRANELFHGGQHVPSSSFENTYLQRMRKLGNGRKDIEVND 69

Query: 68 YQIFGANPRHTPKP 82
          Y   G N  HTP+P
Sbjct: 70 YSESGPNKSHTPEP 83

[Close]

BLAST of Csa5G605220 vs. NCBI nr
Match: gi|700196751|gb|KGN51928.1| (hypothetical protein Csa_5G605220 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 2.1e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
          MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 61 MDLQFNDYQIFGANPRHTPKPTGKV 86
          MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]

BLAST of Csa5G605220 vs. NCBI nr
Match: gi|659091095|ref|XP_008446366.1| (PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 2.9e-38
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 1


Query: 1   MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60
           MADQTQHLVMSF L+SLLIIFFNTVSASRAT M+HLGQDFPASQA NQKNQP ENLWNGR
Sbjct: 28  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 87

Query: 61  MDLQFNDYQIFGANPRHTPKPTGKV 86
           MDLQFNDYQIFGANPRHTPKPTGKV
Sbjct: 88  MDLQFNDYQIFGANPRHTPKPTGKV 112

[Close]

BLAST of Csa5G605220 vs. NCBI nr
Match: gi|223538335|gb|EEF39942.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 58.9 bits (141), Expect = 5.0e-06
Identity = 30/74 (40.54%), Postives = 39/74 (52.70%), Query Frame = 1


Query: 8  LVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGRMDLQFND 67
          LV+   + S L+   N  S SRA  + H GQ  P+S   N   Q +  L NGR D++ ND
Sbjct: 10 LVIILLVFSQLLFSLNAASTSRANELFHGGQHVPSSSFENTYLQRMRKLGNGRKDIEVND 69

Query: 68 YQIFGANPRHTPKP 82
          Y   G N  HTP+P
Sbjct: 70 YSESGPNKSHTPEP 83

The following BLAST results are available for this feature:

BLAST of Csa5G605220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQN6_CUCSA	1.5e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605220 PE=4 SV=1	[more]
B9S8Y1_RICCO	3.5e-06	40.54	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836660 PE=4 SV=1	[more]

BLAST of Csa5G605220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700196751\|gb\|KGN51928.1\|	2.1e-41	100.00	hypothetical protein Csa_5G605220 [Cucumis sativus]	[more]
gi\|659091095\|ref\|XP_008446366.1\|	2.9e-38	92.94	PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo]	[more]
gi\|223538335\|gb\|EEF39942.1\|	5.0e-06	40.54	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU125665	cucumber EST collection version 3.0	transcribed_cluster
CU126609	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G605220.1	Csa5G605220.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU126609	CU126609	transcribed_cluster
CU125665	CU125665	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33474	FAMILY NOT NAMED	coord: 1..85 score: 3.5
None	No IPR available	PANTHER	PTHR33474:SF6	SUBFAMILY NOT NAMED	coord: 1..85 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G605220	ClCG05G024200	Watermelon (Charleston Gray)	cuwcgB394
Csa5G605220	Lsi04G004120	Bottle gourd (USVL1VR-Ls)	culsiB368
Csa5G605220	Cla97C05G106240	Watermelon (97103) v2	cuwmbB383
Csa5G605220	Bhi07G001270	Wax gourd	cuwgoB512
Csa5G605220	CSPI05G23820	Wild cucumber (PI 183967)	cpicuB239
Csa5G605220	CmaCh04G016640	Cucurbita maxima (Rimu)	cmacuB724
Csa5G605220	CmoCh04G017430	Cucurbita moschata (Rifu)	cmocuB715
Csa5G605220	Cp4.1LG01g12350	Cucurbita pepo (Zucchini)	cpecuB416
Csa5G605220	Carg14402	Silver-seed gourd	carcuB0272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G605220	Cucurbita pepo (Zucchini)	cpecuB041
Csa5G605220	Cucurbita pepo (Zucchini)	cpecuB524
Csa5G605220	Cucurbita pepo (Zucchini)	cpecuB580
Csa5G605220	Cucurbita pepo (Zucchini)	cpecuB581
Csa5G605220	Cucurbita pepo (Zucchini)	cpecuB681
Csa5G605220	Bottle gourd (USVL1VR-Ls)	culsiB343
Csa5G605220	Bottle gourd (USVL1VR-Ls)	culsiB350
Csa5G605220	Bottle gourd (USVL1VR-Ls)	culsiB355
Csa5G605220	Bottle gourd (USVL1VR-Ls)	culsiB384
Csa5G605220	Cucumber (Gy14) v2	cgybcuB034
Csa5G605220	Cucumber (Gy14) v2	cgybcuB133
Csa5G605220	Cucumber (Gy14) v2	cgybcuB223
Csa5G605220	Cucumber (Gy14) v2	cgybcuB227
Csa5G605220	Melon (DHL92) v3.6.1	cumedB342
Csa5G605220	Melon (DHL92) v3.6.1	cumedB359
Csa5G605220	Melon (DHL92) v3.6.1	cumedB372
Csa5G605220	Melon (DHL92) v3.6.1	cumedB375
Csa5G605220	Melon (DHL92) v3.6.1	cumedB384
Csa5G605220	Silver-seed gourd	carcuB0054
Csa5G605220	Silver-seed gourd	carcuB0108
Csa5G605220	Silver-seed gourd	carcuB0238
Csa5G605220	Silver-seed gourd	carcuB0420
Csa5G605220	Silver-seed gourd	carcuB0722
Csa5G605220	Watermelon (97103) v2	cuwmbB352
Csa5G605220	Watermelon (97103) v2	cuwmbB373
Csa5G605220	Watermelon (97103) v2	cuwmbB391
Csa5G605220	Watermelon (97103) v2	cuwmbB410
Csa5G605220	Wax gourd	cuwgoB436
Csa5G605220	Wax gourd	cuwgoB474
Csa5G605220	Wax gourd	cuwgoB496
Csa5G605220	Wax gourd	cuwgoB525
Csa5G605220	Cucumber (Chinese Long) v2	cucuB028
Csa5G605220	Cucumber (Chinese Long) v2	cucuB029
Csa5G605220	Cucumber (Chinese Long) v2	cucuB106
Csa5G605220	Cucumber (Chinese Long) v2	cucuB156
Csa5G605220	Cucumber (Gy14) v1	cgycuB142
Csa5G605220	Cucumber (Gy14) v1	cgycuB231
Csa5G605220	Cucumber (Gy14) v1	cgycuB303
Csa5G605220	Cucumber (Gy14) v1	cgycuB410
Csa5G605220	Cucumber (Gy14) v1	cgycuB482
Csa5G605220	Cucurbita maxima (Rimu)	cmacuB080
Csa5G605220	Cucurbita maxima (Rimu)	cmacuB227
Csa5G605220	Cucurbita maxima (Rimu)	cmacuB307
Csa5G605220	Cucurbita maxima (Rimu)	cmacuB417
Csa5G605220	Cucurbita maxima (Rimu)	cmacuB481
Csa5G605220	Cucurbita moschata (Rifu)	cmocuB070
Csa5G605220	Cucurbita moschata (Rifu)	cmocuB123
Csa5G605220	Cucurbita moschata (Rifu)	cmocuB213
Csa5G605220	Cucurbita moschata (Rifu)	cmocuB406
Csa5G605220	Cucurbita moschata (Rifu)	cmocuB470
Csa5G605220	Cucurbita moschata (Rifu)	cmocuB471
Csa5G605220	Melon (DHL92) v3.5.1	cumeB377
Csa5G605220	Melon (DHL92) v3.5.1	cumeB366
Csa5G605220	Melon (DHL92) v3.5.1	cumeB388
Csa5G605220	Melon (DHL92) v3.5.1	cumeB392
Csa5G605220	Melon (DHL92) v3.5.1	cumeB398
Csa5G605220	Watermelon (Charleston Gray)	cuwcgB341
Csa5G605220	Watermelon (Charleston Gray)	cuwcgB346
Csa5G605220	Watermelon (Charleston Gray)	cuwcgB385
Csa5G605220	Watermelon (Charleston Gray)	cuwcgB401
Csa5G605220	Watermelon (97103) v1	cuwmB366
Csa5G605220	Watermelon (97103) v1	cuwmB371
Csa5G605220	Watermelon (97103) v1	cuwmB401
Csa5G605220	Watermelon (97103) v1	cuwmB422
Csa5G605220	Watermelon (97103) v1	cuwmB442