Carg14402 (gene) Silver-seed gourd

Overview
NameCarg14402
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_040 : 909382 .. 910034 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGCCAAACCCAACACTTCCTTATGGTTTTGATCCTTCTCTCTCTACTCCTCTCTGCATCAGGTACACAACCTTCAAACCTTGTTTAATGTCATTCTCAGTTCATCTTAATAAGTTTCTATATTCACAGGAGCTGCAATTATGATCCATCTTGGTCAAGATTTTTCAGCTTCCCAAGCTGCACATCAGGTATGTGTACATGTATTATTAAATGAAATGATTTTGAATTGATGGGTTTGTTCAATGGCAGACGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGGATTTGCAGTACAATGACTATCCAGTTTCTGAAGCGAATCATCGGCACACTCCAAAGCCAACTGGGAGAGTTTGATAGAATAAATGTGTTCATCAAAATGTCTCATGTGAACTCTTAACTTAATCCAAAAGAATCAGACATCTAATCTGTTTTTGTGAATTGTTCTTGCTAAACAAGTAAAAGTATCCATGAGTTGGTAATAAGGATTGAAAAAATTATAATGATATTTATAAGCATTTCACTGTACAAAAGAATGATCAGAATATGTTGAAGGGGGGGTTTGAACAGATTCCCCATTTCTGGTAACATTATCAAAAGAGAAACTCACCCAAATCTCCCTTTCTCCTCTCCTCTCTGACC

mRNA sequence

ATGGCAGGCCAAACCCAACACTTCCTTATGGTTTTGATCCTTCTCTCTCTACTCCTCTCTGCATCAGGAGCTGCAATTATGATCCATCTTGGTCAAGATTTTTCAGCTTCCCAAGCTGCACATCAGACGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGGATTTGCAGTACAATGACTATCCAGTTTCTGAAGCGAATCATCGGCACACTCCAAAGCCAACTGGGAGAGTTTGATAGAATAAATGTGTTCATCAAAATGTCTCATGTGAACTCTTAACTTAATCCAAAAGAATCAGACATCTAATCTGTTTTTGTGAATTGTTCTTGCTAAACAAGTAAAAGTATCCATGAGTTGGTAATAAGGATTGAAAAAATTATAATGATATTTATAAGCATTTCACTGTACAAAAGAATGATCAGAATATGTTGAAGGGGGGGTTTGAACAGATTCCCCATTTCTGGTAACATTATCAAAAGAGAAACTCACCCAAATCTCCCTTTCTCCTCTCCTCTCTGACC

Coding sequence (CDS)

ATGGCAGGCCAAACCCAACACTTCCTTATGGTTTTGATCCTTCTCTCTCTACTCCTCTCTGCATCAGGAGCTGCAATTATGATCCATCTTGGTCAAGATTTTTCAGCTTCCCAAGCTGCACATCAGACGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGGATTTGCAGTACAATGACTATCCAGTTTCTGAAGCGAATCATCGGCACACTCCAAAGCCAACTGGGAGAGTTTGA

Protein sequence

MAGQTQHFLMVLILLSLLLSASGAAIMIHLGQDFSASQAAHQTKQPLQKLLNDRMDLQYNDYPVSEANHRHTPKPTGRV
Homology
[Close]
BLAST of Carg14402 vs. NCBI nr
Match: KGN51928.1 (hypothetical protein Csa_5G605220 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 6.5e-17
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 1  MAGQTQHFLMVLILLSLLL------SASGAAIMIHLGQDFSASQAAHQTKQPLQKLLNDR 60
          MA QTQH +M   L+SLL+      SAS A +MIHLGQDF ASQA +Q  QPL+ L N R
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 61 MDLQYNDYPVSEANHRHTPKPTGRV 80
          MDLQ+NDY +  AN RHTPKPTG+V
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]
BLAST of Carg14402 vs. NCBI nr
Match: XP_008446367.1 (PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-16
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 1   MAGQTQHFLMVLILLSLLL------SASGAAIMIHLGQDFSASQAAHQTKQPLQKLLNDR 60
           MA QTQH +M  +LLSLL+      SAS A  M+HLGQDF ASQAA+Q  QP + L N R
Sbjct: 28  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 87

Query: 61  MDLQYNDYPVSEANHRHTPKPTGRV 80
           MDLQ+NDY +  AN RHTPKPTG+V
Sbjct: 88  MDLQFNDYQIFGANPRHTPKPTGKV 112

[Close]
BLAST of Carg14402 vs. TrEMBL
Match: tr|A0A0A0KQN6|A0A0A0KQN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-17
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 1  MAGQTQHFLMVLILLSLLL------SASGAAIMIHLGQDFSASQAAHQTKQPLQKLLNDR 60
          MA QTQH +M   L+SLL+      SAS A +MIHLGQDF ASQA +Q  QPL+ L N R
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 61 MDLQYNDYPVSEANHRHTPKPTGRV 80
          MDLQ+NDY +  AN RHTPKPTG+V
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]
BLAST of Carg14402 vs. TrEMBL
Match: tr|A0A1S3BEE6|A0A1S3BEE6_CUCME (uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.4e-17
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0 

Query: 1   MAGQTQHFLMVLILLSLLL------SASGAAIMIHLGQDFSASQAAHQTKQPLQKLLNDR 60
           MA QTQH +M  +LLSLL+      SAS A  M+HLGQDF ASQAA+Q  QP + L N R
Sbjct: 28  MADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWNGR 87

Query: 61  MDLQYNDYPVSEANHRHTPKPTGRV 80
           MDLQ+NDY +  AN RHTPKPTG+V
Sbjct: 88  MDLQFNDYQIFGANPRHTPKPTGKV 112

The following BLAST results are available for this feature:
BLAST of Carg14402 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51928.16.5e-1761.18hypothetical protein Csa_5G605220 [Cucumis sativus][more]
XP_008446367.11.1e-1661.18PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo][more]
BLAST of Carg14402 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg14402 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg14402 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KQN6|A0A0A0KQN6_CUCSA4.3e-1761.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G605220 PE=4 SV=1[more]
tr|A0A1S3BEE6|A0A1S3BEE6_CUCME7.4e-1761.18uncharacterized protein LOC103489129 OS=Cucumis melo OX=3656 GN=LOC103489129 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14402-RACarg14402-RAmRNA