Cp4.1LG01g12350 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g12350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG01 : 8791560 .. 8791791 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTGCAATTATGATCCATCTTGGTCAAGATTTTTCAGCTTCCCAAGCTGCACGTCAGGTATGTGTATATGTATTATTAAATGAAATGATTTTGAATTGATGGGTTTGTTCAATGGCAGAAGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGGATTTCCAGTACAATGACTATCCAGTTTCTGAAGCGAATCCTTGGCACACTCCAAAGCCAACTGGGAGAGTTTGA

mRNA sequence

GCTGCAATTATGATCCATCTTGGTCAAGATTTTTCAGCTTCCCAAGCTGCACGTCAGAAGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGGATTTCCAGTACAATGACTATCCAGTTTCTGAAGCGAATCCTTGGCACACTCCAAAGCCAACTGGGAGAGTTTGA

Coding sequence (CDS)

GCTGCAATTATGATCCATCTTGGTCAAGATTTTTCAGCTTCCCAAGCTGCACGTCAGAAGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGGATTTCCAGTACAATGACTATCCAGTTTCTGAAGCGAATCCTTGGCACACTCCAAAGCCAACTGGGAGAGTTTGA

Protein sequence

AAIMIHLGQDFSASQAARQKKQPLQKLLNDRMDFQYNDYPVSEANPWHTPKPTGRV
Homology
[Close]
BLAST of Cp4.1LG01g12350 vs. TrEMBL
Match: A0A0A0KQN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605220 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.5e-14
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 1  AAIMIHLGQDFSASQAARQKKQPLQKLLNDRMDFQYNDYPVSEANPWHTPKPTGRV 57
          A +MIHLGQDF ASQA  QK QPL+ L N RMD Q+NDY +  ANP HTPKPTG+V
Sbjct: 30 ATVMIHLGQDFPASQATNQKNQPLENLWNGRMDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]
BLAST of Cp4.1LG01g12350 vs. NCBI nr
Match: gi|700196751|gb|KGN51928.1| (hypothetical protein Csa_5G605220 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 9.4e-14
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 1  AAIMIHLGQDFSASQAARQKKQPLQKLLNDRMDFQYNDYPVSEANPWHTPKPTGRV 57
          A +MIHLGQDF ASQA  QK QPL+ L N RMD Q+NDY +  ANP HTPKPTG+V
Sbjct: 30 ATVMIHLGQDFPASQATNQKNQPLENLWNGRMDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]
BLAST of Cp4.1LG01g12350 vs. NCBI nr
Match: gi|659091095|ref|XP_008446366.1| (PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-13
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 1 

Query: 1   AAIMIHLGQDFSASQAARQKKQPLQKLLNDRMDFQYNDYPVSEANPWHTPKPTGRV 57
           A  M+HLGQDF ASQAA QK QP + L N RMD Q+NDY +  ANP HTPKPTG+V
Sbjct: 57  ATFMVHLGQDFPASQAANQKNQPPENLWNGRMDLQFNDYQIFGANPRHTPKPTGKV 112

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g12350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g12350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQN6_CUCSA6.5e-1467.86Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605220 PE=4 SV=1[more]
BLAST of Cp4.1LG01g12350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g12350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196751|gb|KGN51928.1|9.4e-1467.86hypothetical protein Csa_5G605220 [Cucumis sativus][more]
gi|659091095|ref|XP_008446366.1|6.1e-1366.07PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g12350.1Cp4.1LG01g12350.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g12350CmaCh04G016640Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g12350CmoCh04G017430Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g12350Csa5G605220Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g12350ClCG05G024200Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g12350Lsi04G004120Bottle gourd (USVL1VR-Ls)cpelsiB360
Cp4.1LG01g12350CsaV3_5G032800Cucumber (Chinese Long) v3cpecucB0518
Cp4.1LG01g12350Bhi07G001270Wax gourdcpewgoB0568
Cp4.1LG01g12350Carg14402Silver-seed gourdcarcpeB0344
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g12350Melon (DHL92) v3.6.1cpemedB421
Cp4.1LG01g12350Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g12350Melon (DHL92) v3.6.1cpemedB454
Cp4.1LG01g12350Melon (DHL92) v3.6.1cpemedB459
Cp4.1LG01g12350Silver-seed gourdcarcpeB0069
Cp4.1LG01g12350Silver-seed gourdcarcpeB0148
Cp4.1LG01g12350Silver-seed gourdcarcpeB0981
Cp4.1LG01g12350Cucumber (Chinese Long) v3cpecucB0470
Cp4.1LG01g12350Cucumber (Chinese Long) v3cpecucB0471
Cp4.1LG01g12350Cucumber (Chinese Long) v3cpecucB0537
Cp4.1LG01g12350Wax gourdcpewgoB0507
Cp4.1LG01g12350Wax gourdcpewgoB0550
Cp4.1LG01g12350Wax gourdcpewgoB0581
Cp4.1LG01g12350Cucurbita pepo (Zucchini)cpecpeB034
Cp4.1LG01g12350Cucurbita pepo (Zucchini)cpecpeB203
Cp4.1LG01g12350Cucurbita pepo (Zucchini)cpecpeB346
Cp4.1LG01g12350Cucurbita pepo (Zucchini)cpecpeB390
Cp4.1LG01g12350Cucumber (Gy14) v1cgycpeB0256
Cp4.1LG01g12350Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g12350Cucurbita maxima (Rimu)cmacpeB432
Cp4.1LG01g12350Cucurbita maxima (Rimu)cmacpeB478
Cp4.1LG01g12350Cucurbita moschata (Rifu)cmocpeB395
Cp4.1LG01g12350Cucurbita moschata (Rifu)cmocpeB436
Cp4.1LG01g12350Wild cucumber (PI 183967)cpecpiB379
Cp4.1LG01g12350Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g12350Cucumber (Chinese Long) v2cpecuB379
Cp4.1LG01g12350Bottle gourd (USVL1VR-Ls)cpelsiB331
Cp4.1LG01g12350Watermelon (Charleston Gray)cpewcgB385
Cp4.1LG01g12350Watermelon (97103) v1cpewmB432
Cp4.1LG01g12350Watermelon (97103) v1cpewmB448
Cp4.1LG01g12350Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g12350Melon (DHL92) v3.5.1cpemeB392
Cp4.1LG01g12350Cucumber (Gy14) v2cgybcpeB060
Cp4.1LG01g12350Cucumber (Gy14) v2cgybcpeB061
Cp4.1LG01g12350Cucumber (Gy14) v2cgybcpeB626
Cp4.1LG01g12350Cucumber (Gy14) v2cgybcpeB645