CmaCh04G016640 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G016640
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr04 : 8373153 .. 8373793 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATAACTCTTCTTTCTGTAATCCCCACTCAATTTGTGACTTTGAGATCCAAACAAAGAGTTTAAGCTTAAATCAAAGATTTCTATGTGCTTCACTTCACCAACCCATTCTCTTGCAATATATATATATATATATATCTATAAACACATAAACATGCGAGTTACAAGGGGATGAAGATCAAAACCGTGTAATGAAAATGGCAGGCCAAACCCAACACTTCCTTATGGTTTTGATCCTTCTCTCTCTACTCCTCTCTGCATCAGGTACACAACCTTCAAACCTTGTTTAATGAAATTACTTCCTCTCTAATTCTCAGTTCATCTTAATAAGTTTATATATTCACAGGAGCTGCAATTATGCTCCATCTTGGCCAAGATGTTCCAGCTTCCCAAGCTGCACATCAGGTATGTGTATATGTAATTATTAAATGAAATGATTTTGAATTGATGGGTTTATTCAACGGCAGAAGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGAATTTGCAGTACAATGACTATCCAGTTTCTGAAGCGAATCCTCGGCACACTCCAAAGCCAACTGGGAGAGTTTGATAGAATAAATGTTCATCAAAATGTCTCATGTGAAGTCTTAACTTAATCCAAAAGAATCAG

mRNA sequence

TATATAACTCTTCTTTCTGTAATCCCCACTCAATTTGTGACTTTGAGATCCAAACAAAGAGTTTAAGCTTAAATCAAAGATTTCTATGTGCTTCACTTCACCAACCCATTCTCTTGCAATATATATATATATATATATCTATAAACACATAAACATGCGAGTTACAAGGGGATGAAGATCAAAACCGTGTAATGAAAATGGCAGGCCAAACCCAACACTTCCTTATGGTTTTGATCCTTCTCTCTCTACTCCTCTCTGCATCAGGAGCTGCAATTATGCTCCATCTTGGCCAAGATGTTCCAGCTTCCCAAGCTGCACATCAGAAGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGAATTTGCAGTACAATGACTATCCAGTTTCTGAAGCGAATCCTCGGCACACTCCAAAGCCAACTGGGAGAGTTTGATAGAATAAATGTTCATCAAAATGTCTCATGTGAAGTCTTAACTTAATCCAAAAGAATCAG

Coding sequence (CDS)

ATGAAAATGGCAGGCCAAACCCAACACTTCCTTATGGTTTTGATCCTTCTCTCTCTACTCCTCTCTGCATCAGGAGCTGCAATTATGCTCCATCTTGGCCAAGATGTTCCAGCTTCCCAAGCTGCACATCAGAAGAAGCAGCCACTGCAAAAGTTATTGAATGATAGAATGAATTTGCAGTACAATGACTATCCAGTTTCTGAAGCGAATCCTCGGCACACTCCAAAGCCAACTGGGAGAGTTTGA

Protein sequence

MKMAGQTQHFLMVLILLSLLLSASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDRMNLQYNDYPVSEANPRHTPKPTGRV
Homology
[Close]
BLAST of CmaCh04G016640 vs. TrEMBL
Match: A0A0A0KQN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605220 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.8e-18
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 3  MAGQTQHFLMVLILLSLL------LSASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDR 62
          MA QTQH +M   L+SLL      +SAS A +M+HLGQD PASQA +QK QPL+ L N R
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 63 MNLQYNDYPVSEANPRHTPKPTGRV 82
          M+LQ+NDY +  ANPRHTPKPTG+V
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

[Close]
BLAST of CmaCh04G016640 vs. NCBI nr
Match: gi|659091095|ref|XP_008446366.1| (PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 8.2e-19
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 1 

Query: 1   MKMAGQTQHFLMVLILLSLLL------SASGAAIMLHLGQDVPASQAAHQKKQPLQKLLN 60
           MKMA QTQH +M  +LLSLL+      SAS A  M+HLGQD PASQAA+QK QP + L N
Sbjct: 26  MKMADQTQHLVMSFLLLSLLIIFFNTVSASRATFMVHLGQDFPASQAANQKNQPPENLWN 85

Query: 61  DRMNLQYNDYPVSEANPRHTPKPTGRV 82
            RM+LQ+NDY +  ANPRHTPKPTG+V
Sbjct: 86  GRMDLQFNDYQIFGANPRHTPKPTGKV 112

[Close]
BLAST of CmaCh04G016640 vs. NCBI nr
Match: gi|700196751|gb|KGN51928.1| (hypothetical protein Csa_5G605220 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 6.9e-18
Identity = 52/85 (61.18%), Postives = 63/85 (74.12%), Query Frame = 1 

Query: 3  MAGQTQHFLMVLILLSLL------LSASGAAIMLHLGQDVPASQAAHQKKQPLQKLLNDR 62
          MA QTQH +M   L+SLL      +SAS A +M+HLGQD PASQA +QK QPL+ L N R
Sbjct: 1  MADQTQHLVMSFFLVSLLIIFFNTVSASRATVMIHLGQDFPASQATNQKNQPLENLWNGR 60

Query: 63 MNLQYNDYPVSEANPRHTPKPTGRV 82
          M+LQ+NDY +  ANPRHTPKPTG+V
Sbjct: 61 MDLQFNDYQIFGANPRHTPKPTGKV 85

The following BLAST results are available for this feature:
BLAST of CmaCh04G016640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G016640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQN6_CUCSA4.8e-1861.18Uncharacterized protein OS=Cucumis sativus GN=Csa_5G605220 PE=4 SV=1[more]
BLAST of CmaCh04G016640 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh04G016640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091095|ref|XP_008446366.1|8.2e-1963.22PREDICTED: uncharacterized protein LOC103489129 [Cucumis melo][more]
gi|700196751|gb|KGN51928.1|6.9e-1861.18hypothetical protein Csa_5G605220 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G016640.1CmaCh04G016640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G016640Csa5G605220Cucumber (Chinese Long) v2cmacuB724
CmaCh04G016640ClCG05G024200Watermelon (Charleston Gray)cmawcgB658
CmaCh04G016640CmoCh04G017430Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G016640Lsi04G004120Bottle gourd (USVL1VR-Ls)cmalsiB678
CmaCh04G016640Cp4.1LG01g12350Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G016640CsaV3_5G032800Cucumber (Chinese Long) v3cmacucB0861
CmaCh04G016640Cla97C05G106240Watermelon (97103) v2cmawmbB762
CmaCh04G016640Bhi07G001270Wax gourdcmawgoB0902
CmaCh04G016640CsGy5G023350Cucumber (Gy14) v2cgybcmaB648
CmaCh04G016640Carg14402Silver-seed gourdcarcmaB0339
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G016640Melon (DHL92) v3.6.1cmamedB725
CmaCh04G016640Melon (DHL92) v3.6.1cmamedB740
CmaCh04G016640Melon (DHL92) v3.6.1cmamedB752
CmaCh04G016640Melon (DHL92) v3.6.1cmamedB756
CmaCh04G016640Silver-seed gourdcarcmaB0068
CmaCh04G016640Silver-seed gourdcarcmaB0133
CmaCh04G016640Cucumber (Chinese Long) v3cmacucB0814
CmaCh04G016640Cucumber (Chinese Long) v3cmacucB0815
CmaCh04G016640Watermelon (97103) v2cmawmbB717
CmaCh04G016640Watermelon (97103) v2cmawmbB755
CmaCh04G016640Watermelon (97103) v2cmawmbB772
CmaCh04G016640Watermelon (97103) v2cmawmbB798
CmaCh04G016640Wax gourdcmawgoB0844
CmaCh04G016640Wax gourdcmawgoB0887
CmaCh04G016640Wax gourdcmawgoB0916
CmaCh04G016640Cucurbita maxima (Rimu)cmacmaB113
CmaCh04G016640Cucurbita maxima (Rimu)cmacmaB237
CmaCh04G016640Cucurbita maxima (Rimu)cmacmaB330
CmaCh04G016640Cucurbita maxima (Rimu)cmacmaB405
CmaCh04G016640Cucurbita maxima (Rimu)cmacmaB423
CmaCh04G016640Cucumber (Gy14) v1cgycmaB0274
CmaCh04G016640Cucumber (Gy14) v1cgycmaB0442
CmaCh04G016640Cucumber (Gy14) v1cgycmaB0592
CmaCh04G016640Cucumber (Gy14) v1cgycmaB0804
CmaCh04G016640Cucurbita moschata (Rifu)cmacmoB709
CmaCh04G016640Cucurbita moschata (Rifu)cmacmoB715
CmaCh04G016640Wild cucumber (PI 183967)cmacpiB692
CmaCh04G016640Wild cucumber (PI 183967)cmacpiB693
CmaCh04G016640Wild cucumber (PI 183967)cmacpiB731
CmaCh04G016640Wild cucumber (PI 183967)cmacpiB748
CmaCh04G016640Cucumber (Chinese Long) v2cmacuB684
CmaCh04G016640Cucumber (Chinese Long) v2cmacuB685
CmaCh04G016640Cucumber (Chinese Long) v2cmacuB740
CmaCh04G016640Melon (DHL92) v3.5.1cmameB653
CmaCh04G016640Melon (DHL92) v3.5.1cmameB670
CmaCh04G016640Melon (DHL92) v3.5.1cmameB674
CmaCh04G016640Watermelon (Charleston Gray)cmawcgB653
CmaCh04G016640Watermelon (Charleston Gray)cmawcgB667
CmaCh04G016640Watermelon (97103) v1cmawmB702
CmaCh04G016640Watermelon (97103) v1cmawmB721
CmaCh04G016640Watermelon (97103) v1cmawmB747
CmaCh04G016640Cucurbita pepo (Zucchini)cmacpeB695
CmaCh04G016640Bottle gourd (USVL1VR-Ls)cmalsiB654
CmaCh04G016640Bottle gourd (USVL1VR-Ls)cmalsiB645
CmaCh04G016640Bottle gourd (USVL1VR-Ls)cmalsiB694
CmaCh04G016640Cucumber (Gy14) v2cgybcmaB129
CmaCh04G016640Cucumber (Gy14) v2cgybcmaB130