Csa5G175840 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G175840
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 7428407 .. 7428789 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTTCCATTCAACTCTCTTCTCTCTCTCTTTGCTTGTGATCAGAGATGGGTTTGGTGGTGGTGATCTCTCTGCCTTTGATTTTCTTCTGCTTGTTGCTTGGTTTCGGATGTTACTTTCTAGGCCGAGCAAAAGGGAGACAAGACATACGGACTAATGCACAGATATTCGGTGTGCCCACGCCGCCACCTGGTAGTGGTGCAGCTCATTCGCCATCATCACTGCAGCCGGTTTTCAAACCTGAAAATACCACCAATGTTTGATTAGTAATCAGATCTAAGTTCAATTCTTCACTGTACTGCTGTTTGTGACTTTGTGTATGTAAATTCTGTACTATGAGTTTAAACTTCAATACTCTATGGGTGAATCATTTTTCCAGTTA

mRNA sequence

ATGGGTTTGGTGGTGGTGATCTCTCTGCCTTTGATTTTCTTCTGCTTGTTGCTTGGTTTCGGATGTTACTTTCTAGGCCGAGCAAAAGGGAGACAAGACATACGGACTAATGCACAGATATTCGGTGTGCCCACGCCGCCACCTGGTAGTGGTGCAGCTCATTCGCCATCATCACTGCAGCCGGTTTTCAAACCTGAAAATACCACCAATGTTTGA

Coding sequence (CDS)

ATGGGTTTGGTGGTGGTGATCTCTCTGCCTTTGATTTTCTTCTGCTTGTTGCTTGGTTTCGGATGTTACTTTCTAGGCCGAGCAAAAGGGAGACAAGACATACGGACTAATGCACAGATATTCGGTGTGCCCACGCCGCCACCTGGTAGTGGTGCAGCTCATTCGCCATCATCACTGCAGCCGGTTTTCAAACCTGAAAATACCACCAATGTTTGA

Protein sequence

MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQPVFKPENTTNV*

Homology

[Close]

BLAST of Csa5G175840 vs. TrEMBL
Match: A0A0A0KRY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175840 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60

Query: 61 PVFKPENTTNV 72
          PVFKPENTTNV
Sbjct: 61 PVFKPENTTNV 71

[Close]

BLAST of Csa5G175840 vs. TrEMBL
Match: R0I4P3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010814mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-20
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGTPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTNV 72
          P  KP+N+ NV
Sbjct: 61 PHAKPDNSQNV 70

[Close]

BLAST of Csa5G175840 vs. TrEMBL
Match: Q8LG39_ARATH (At1g31335 OS=Arabidopsis thaliana GN=At1g31335 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-20
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTNV 72
          P  KP+N+ NV
Sbjct: 61 PHAKPDNSHNV 70

[Close]

BLAST of Csa5G175840 vs. TrEMBL
Match: D7KL22_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473639 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.8e-20
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR +IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRHEIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTNV 72
          P  KP+N+ +V
Sbjct: 61 PQTKPDNSHSV 70

[Close]

BLAST of Csa5G175840 vs. TrEMBL
Match: A9PCK5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14790g PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-19
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MG+VVVISLPLI FCLLLGFGCY+LGR KGRQD+RTNAQ+FGVP PPPG+ +   P    
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDVRTNAQVFGVPIPPPGTASKPPP---P 60

Query: 61 PVFKPENTTNV 72
          P  KP N  NV
Sbjct: 61 PHSKPGNLENV 68

[Close]

BLAST of Csa5G175840 vs. TAIR10
Match: AT1G31335.1 (AT1G31335.1 unknown protein)

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-23
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTNV 72
          P  KP+N+ NV
Sbjct: 61 PHAKPDNSHNV 70

[Close]

BLAST of Csa5G175840 vs. NCBI nr
Match: gi|449451725|ref|XP_004143612.1| (PREDICTED: uncharacterized protein LOC101203814 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60

Query: 61 PVFKPENTTNV 72
          PVFKPENTTNV
Sbjct: 61 PVFKPENTTNV 71

[Close]

BLAST of Csa5G175840 vs. NCBI nr
Match: gi|659090148|ref|XP_008445862.1| (PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-32
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSS Q
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSQQ 60

Query: 61 PVFKPENTTNV 72
          PVFKPENTTNV
Sbjct: 61 PVFKPENTTNV 71

[Close]

BLAST of Csa5G175840 vs. NCBI nr
Match: gi|565493444|ref|XP_006304361.1| (hypothetical protein CARUB_v10010814mg [Capsella rubella])

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGTPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTNV 72
          P  KP+N+ NV
Sbjct: 61 PHAKPDNSQNV 70

[Close]

BLAST of Csa5G175840 vs. NCBI nr
Match: gi|18397903|ref|NP_564378.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-20
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTNV 72
          P  KP+N+ NV
Sbjct: 61 PHAKPDNSHNV 70

[Close]

BLAST of Csa5G175840 vs. NCBI nr
Match: gi|297846542|ref|XP_002891152.1| (hypothetical protein ARALYDRAFT_473639 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-19
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR +IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRHEIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTNV 72
          P  KP+N+ +V
Sbjct: 61 PQTKPDNSHSV 70

The following BLAST results are available for this feature:

BLAST of Csa5G175840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRY6_CUCSA	2.1e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175840 PE=4 SV=1	[more]
R0I4P3_9BRAS	1.6e-20	70.42	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010814mg PE=4 SV=1	[more]
Q8LG39_ARATH	2.1e-20	70.42	At1g31335 OS=Arabidopsis thaliana GN=At1g31335 PE=2 SV=1	[more]
D7KL22_ARALL	7.8e-20	69.01	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A9PCK5_POPTR	3.9e-19	69.01	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14790g PE=2 SV=1	[more]

BLAST of Csa5G175840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31335.1	1.0e-23	70.42	unknown protein	[more]

BLAST of Csa5G175840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451725\|ref\|XP_004143612.1\|	3.1e-33	100.00	PREDICTED: uncharacterized protein LOC101203814 [Cucumis sativus]	[more]
gi\|659090148\|ref\|XP_008445862.1\|	1.5e-32	98.59	PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo]	[more]
gi\|565493444\|ref\|XP_006304361.1\|	2.3e-20	70.42	hypothetical protein CARUB_v10010814mg [Capsella rubella]	[more]
gi\|18397903\|ref\|NP_564378.1\|	3.0e-20	70.42	uncharacterized protein [Arabidopsis thaliana]	[more]
gi\|297846542\|ref\|XP_002891152.1\|	1.1e-19	69.01	hypothetical protein ARALYDRAFT_473639 [Arabidopsis lyrata subsp. lyrata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU118275	cucumber EST collection version 3.0	transcribed_cluster
CU146148	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G175840.1	Csa5G175840.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU146148	CU146148	transcribed_cluster
CU118275	CU118275	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33727	FAMILY NOT NAMED	coord: 1..71 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G175840	Cla020070	Watermelon (97103) v1	cuwmB428
Csa5G175840	MELO3C011733	Melon (DHL92) v3.5.1	cumeB370
Csa5G175840	ClCG02G013940	Watermelon (Charleston Gray)	cuwcgB380
Csa5G175840	Lsi04G008090	Bottle gourd (USVL1VR-Ls)	culsiB363
Csa5G175840	Cla97C02G039590	Watermelon (97103) v2	cuwmbB368
Csa5G175840	CSPI05G08790	Wild cucumber (PI 183967)	cpicuB240
Csa5G175840	CmaCh04G012450	Cucurbita maxima (Rimu)	cmacuB746
Csa5G175840	CmoCh04G013180	Cucurbita moschata (Rifu)	cmocuB736
Csa5G175840	Carg25672	Silver-seed gourd	carcuB0867

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G175840	Melon (DHL92) v3.6.1	cumedB348
Csa5G175840	Silver-seed gourd	carcuB0858
Csa5G175840	Wax gourd	cuwgoB514
Csa5G175840	Cucumber (Gy14) v1	cgycuB251
Csa5G175840	Cucurbita maxima (Rimu)	cmacuB747
Csa5G175840	Cucurbita moschata (Rifu)	cmocuB737
Csa5G175840	Cucurbita pepo (Zucchini)	cpecuB437
Csa5G175840	Cucurbita pepo (Zucchini)	cpecuB438
Csa5G175840	Cucumber (Gy14) v2	cgybcuB224