CmaCh04G012450 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G012450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 6384219 .. 6384434 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGGTGATGGTGATCTCTCTGCCACTCATTTTCTTCTGCTTGCTGCTCGGTTTCGGGTGTTACTTTCTTGGCCGAGCAAAAGGGAGACAAGACATCAGGACTAATGCTCAGACATTTGGGGTGCCCATGCCGCCTCCCAGTAGCGCTGCCGCTCATTCCCTATCGCCACAGCAGCCAATTTTCAAACCTGATAATTCCATCAATGTTTGA

mRNA sequence

ATGGGTTTGGTGATGGTGATCTCTCTGCCACTCATTTTCTTCTGCTTGCTGCTCGGTTTCGGGTGTTACTTTCTTGGCCGAGCAAAAGGGAGACAAGACATCAGGACTAATGCTCAGACATTTGGGGTGCCCATGCCGCCTCCCAGTAGCGCTGCCGCTCATTCCCTATCGCCACAGCAGCCAATTTTCAAACCTGATAATTCCATCAATGTTTGA

Coding sequence (CDS)

ATGGGTTTGGTGATGGTGATCTCTCTGCCACTCATTTTCTTCTGCTTGCTGCTCGGTTTCGGGTGTTACTTTCTTGGCCGAGCAAAAGGGAGACAAGACATCAGGACTAATGCTCAGACATTTGGGGTGCCCATGCCGCCTCCCAGTAGCGCTGCCGCTCATTCCCTATCGCCACAGCAGCCAATTTTCAAACCTGATAATTCCATCAATGTTTGA

Protein sequence

MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQPIFKPDNSINV

Homology

[Close]

BLAST of CmaCh04G012450 vs. TrEMBL
Match: A0A0A0KRY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175840 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-25
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ FGVP PPP S AAHS S  Q
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60

Query: 61 PIFKPDNSINV 72
          P+FKP+N+ NV
Sbjct: 61 PVFKPENTTNV 71

[Close]

BLAST of CmaCh04G012450 vs. TrEMBL
Match: R0I4P3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010814mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.5e-18
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q +G P PPP + AA S  P  
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGTPAPPPGAIAASS-PPLS 60

Query: 61 PIFKPDNSINV 72
          P  KPDNS NV
Sbjct: 61 PHAKPDNSQNV 70

[Close]

BLAST of CmaCh04G012450 vs. TrEMBL
Match: Q8LG39_ARATH (At1g31335 OS=Arabidopsis thaliana GN=At1g31335 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.5e-18
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q +G P PPP + AA S  P  
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASS-PPLS 60

Query: 61 PIFKPDNSINV 72
          P  KPDNS NV
Sbjct: 61 PHAKPDNSHNV 70

[Close]

BLAST of CmaCh04G012450 vs. TrEMBL
Match: A9PCF4_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MG+V+VISLPLI FCLLLGFGCY+LGR KGRQD+RTNAQ FGVP+PPP +A   S  P  
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDVRTNAQVFGVPIPPPDTA---SKPPPP 60

Query: 61 PIFKPDNSINV 72
          P  KP N  NV
Sbjct: 61 PHSKPGNLENV 68

[Close]

BLAST of CmaCh04G012450 vs. TrEMBL
Match: A9PCK5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14790g PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.6e-17
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MG+V+VISLPLI FCLLLGFGCY+LGR KGRQD+RTNAQ FGVP+PPP +A   S  P  
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDVRTNAQVFGVPIPPPGTA---SKPPPP 60

Query: 61 PIFKPDNSINV 72
          P  KP N  NV
Sbjct: 61 PHSKPGNLENV 68

[Close]

BLAST of CmaCh04G012450 vs. TAIR10
Match: AT1G31335.1 (AT1G31335.1 unknown protein)

HSP 1 Score: 97.1 bits (240), Expect = 4.8e-21
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q +G P PPP + AA S  P  
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASS-PPLS 60

Query: 61 PIFKPDNSINV 72
          P  KPDNS NV
Sbjct: 61 PHAKPDNSHNV 70

[Close]

BLAST of CmaCh04G012450 vs. NCBI nr
Match: gi|659090148|ref|XP_008445862.1| (PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-25
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ FGVP PPP S AAHS S QQ
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSQQ 60

Query: 61 PIFKPDNSINV 72
          P+FKP+N+ NV
Sbjct: 61 PVFKPENTTNV 71

[Close]

BLAST of CmaCh04G012450 vs. NCBI nr
Match: gi|449451725|ref|XP_004143612.1| (PREDICTED: uncharacterized protein LOC101203814 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 8.8e-25
Identity = 59/71 (83.10%), Postives = 63/71 (88.73%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ FGVP PPP S AAHS S  Q
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60

Query: 61 PIFKPDNSINV 72
          P+FKP+N+ NV
Sbjct: 61 PVFKPENTTNV 71

[Close]

BLAST of CmaCh04G012450 vs. NCBI nr
Match: gi|565493444|ref|XP_006304361.1| (hypothetical protein CARUB_v10010814mg [Capsella rubella])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q +G P PPP + AA S  P  
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGTPAPPPGAIAASS-PPLS 60

Query: 61 PIFKPDNSINV 72
          P  KPDNS NV
Sbjct: 61 PHAKPDNSQNV 70

[Close]

BLAST of CmaCh04G012450 vs. NCBI nr
Match: gi|18397903|ref|NP_564378.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q +G P PPP + AA S  P  
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASS-PPLS 60

Query: 61 PIFKPDNSINV 72
          P  KPDNS NV
Sbjct: 61 PHAKPDNSHNV 70

[Close]

BLAST of CmaCh04G012450 vs. NCBI nr
Match: gi|566162686|ref|XP_002303699.2| (hypothetical protein POPTR_0003s14790g [Populus trichocarpa])

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-17
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPPSSAAAHSLSPQQ 60
          MG+V+VISLPLI FCLLLGFGCY+LGR KGRQD+RTNAQ FGVP+PPP +A   S  P  
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDVRTNAQVFGVPIPPPGTA---SKPPPP 60

Query: 61 PIFKPDNSINV 72
          P  KP N  NV
Sbjct: 61 PHSKPGNLENV 68

The following BLAST results are available for this feature:

BLAST of CmaCh04G012450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G012450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRY6_CUCSA	6.1e-25	83.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175840 PE=4 SV=1	[more]
R0I4P3_9BRAS	9.5e-18	69.01	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010814mg PE=4 SV=1	[more]
Q8LG39_ARATH	9.5e-18	69.01	At1g31335 OS=Arabidopsis thaliana GN=At1g31335 PE=2 SV=1	[more]
A9PCF4_POPTR	3.6e-17	69.01	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
A9PCK5_POPTR	3.6e-17	69.01	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14790g PE=2 SV=1	[more]

BLAST of CmaCh04G012450 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31335.1	4.8e-21	69.01	unknown protein	[more]

BLAST of CmaCh04G012450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090148\|ref\|XP_008445862.1\|	1.4e-25	84.51	PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo]	[more]
gi\|449451725\|ref\|XP_004143612.1\|	8.8e-25	83.10	PREDICTED: uncharacterized protein LOC101203814 [Cucumis sativus]	[more]
gi\|565493444\|ref\|XP_006304361.1\|	1.4e-17	69.01	hypothetical protein CARUB_v10010814mg [Capsella rubella]	[more]
gi\|18397903\|ref\|NP_564378.1\|	1.4e-17	69.01	uncharacterized protein [Arabidopsis thaliana]	[more]
gi\|566162686\|ref\|XP_002303699.2\|	5.2e-17	69.01	hypothetical protein POPTR_0003s14790g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G012450.1	CmaCh04G012450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33727	FAMILY NOT NAMED	coord: 1..71 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G012450	Cla020070	Watermelon (97103) v1	cmawmB723
CmaCh04G012450	Csa5G175840	Cucumber (Chinese Long) v2	cmacuB746
CmaCh04G012450	ClCG02G013940	Watermelon (Charleston Gray)	cmawcgB641
CmaCh04G012450	CSPI05G08790	Wild cucumber (PI 183967)	cmacpiB756
CmaCh04G012450	CmoCh04G013180	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G012450	CsaV3_5G006230	Cucumber (Chinese Long) v3	cmacucB0884
CmaCh04G012450	Carg25672	Silver-seed gourd	carcmaB1180

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G012450	Cucurbita maxima (Rimu)	cmacmaB531
CmaCh04G012450	Cucumber (Gy14) v1	cgycmaB0472
CmaCh04G012450	Cucurbita moschata (Rifu)	cmacmoB731
CmaCh04G012450	Melon (DHL92) v3.5.1	cmameB652
CmaCh04G012450	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G012450	Cucurbita pepo (Zucchini)	cmacpeB723
CmaCh04G012450	Bottle gourd (USVL1VR-Ls)	cmalsiB676
CmaCh04G012450	Cucumber (Gy14) v2	cgybcmaB673
CmaCh04G012450	Melon (DHL92) v3.6.1	cmamedB739
CmaCh04G012450	Silver-seed gourd	carcmaB1170
CmaCh04G012450	Cucumber (Chinese Long) v3	cmacucB0853
CmaCh04G012450	Watermelon (97103) v2	cmawmbB740
CmaCh04G012450	Wax gourd	cmawgoB0892