CSPI05G08790 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G08790
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transmembrane protein, putative
Location	Chr5 : 7458118 .. 7458555 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGGTGGTGGTGATCTCTCTGCCTTTGATTTTCTTCTGCTTGTTGCTTGGTTTCGGATGTTACTTTCTAGGCCGAGCAAAAGGGAGACAAGACATACGGACTAATGCACAGATATTCGGTGTGCCCACGCCGCCACCTGGTAGTGGTGCAGCTCATTCGCCATCATCACTGCAGCCGGTTTTCAAACCTGAAAATACCACCAATGTTTGATTAGTAATCAGATCTAAGTTCAATTCTTCACTGTACTGCTGTTTGTGACTTTGTGTATGTAAATTCTGTACTATGAGTTTAAACTTCAATACTCTATGGGTGAATCATTTTTCCAGTTATATTCTCTGTCCTACAAGTTTTTGTGCATTCAATCAAATAGACTGACCTTCAAAGTTCGCTGCCATGATGATTCCTCAATCCTTCTGCAGCTGCAATGCTTGA

mRNA sequence

ATGGGTTTGGTGGTGGTGATCTCTCTGCCTTTGATTTTCTTCTGCTTGTTGCTTGGTTTCGGATGTTACTTTCTAGGCCGAGCAAAAGGGAGACAAGACATACGGACTAATGCACAGATATTCGGTGTGCCCACGCCGCCACCTGGTAGTGGTGCAGCTCATTCGCCATCATCACTGCAGCCGGTTTTCAAACCTGAAAATACCACCAATTTCGCTGCCATGATGATTCCTCAATCCTTCTGCAGCTGCAATGCTTGA

Coding sequence (CDS)

ATGGGTTTGGTGGTGGTGATCTCTCTGCCTTTGATTTTCTTCTGCTTGTTGCTTGGTTTCGGATGTTACTTTCTAGGCCGAGCAAAAGGGAGACAAGACATACGGACTAATGCACAGATATTCGGTGTGCCCACGCCGCCACCTGGTAGTGGTGCAGCTCATTCGCCATCATCACTGCAGCCGGTTTTCAAACCTGAAAATACCACCAATTTCGCTGCCATGATGATTCCTCAATCCTTCTGCAGCTGCAATGCTTGA

Homology

[Close]

BLAST of CSPI05G08790 vs. TrEMBL
Match: A0A0A0KRY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175840 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60

Query: 61 PVFKPENTTN 71
          PVFKPENTTN
Sbjct: 61 PVFKPENTTN 70

[Close]

BLAST of CSPI05G08790 vs. TrEMBL
Match: R0I4P3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010814mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.1e-19
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGTPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTN 71
          P  KP+N+ N
Sbjct: 61 PHAKPDNSQN 69

[Close]

BLAST of CSPI05G08790 vs. TrEMBL
Match: Q8LG39_ARATH (At1g31335 OS=Arabidopsis thaliana GN=At1g31335 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.9e-19
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTN 71
          P  KP+N+ N
Sbjct: 61 PHAKPDNSHN 69

[Close]

BLAST of CSPI05G08790 vs. TrEMBL
Match: D7KL22_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_473639 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR +IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRHEIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENT 69
          P  KP+N+
Sbjct: 61 PQTKPDNS 67

[Close]

BLAST of CSPI05G08790 vs. TrEMBL
Match: A0A161XIK6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007806 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.8e-18
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MG+V+VISLPLI F LLLGFGCYFLGRAKGRQD+R NAQ+FGVPTPPPGS A   PS   
Sbjct: 1  MGMVIVISLPLILFSLLLGFGCYFLGRAKGRQDVRNNAQVFGVPTPPPGSDATALPSYPS 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of CSPI05G08790 vs. TAIR10
Match: AT1G31335.1 (AT1G31335.1 unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.0e-22
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTN 71
          P  KP+N+ N
Sbjct: 61 PHAKPDNSHN 69

[Close]

BLAST of CSPI05G08790 vs. NCBI nr
Match: gi|449451725|ref|XP_004143612.1| (PREDICTED: uncharacterized protein LOC101203814 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60

Query: 61 PVFKPENTTN 71
          PVFKPENTTN
Sbjct: 61 PVFKPENTTN 70

[Close]

BLAST of CSPI05G08790 vs. NCBI nr
Match: gi|659090148|ref|XP_008445862.1| (PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 7.6e-31
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSS Q
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSQQ 60

Query: 61 PVFKPENTTN 71
          PVFKPENTTN
Sbjct: 61 PVFKPENTTN 70

[Close]

BLAST of CSPI05G08790 vs. NCBI nr
Match: gi|565493444|ref|XP_006304361.1| (hypothetical protein CARUB_v10010814mg [Capsella rubella])

HSP 1 Score: 101.3 bits (251), Expect = 8.7e-19
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGTPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTN 71
          P  KP+N+ N
Sbjct: 61 PHAKPDNSQN 69

[Close]

BLAST of CSPI05G08790 vs. NCBI nr
Match: gi|18397903|ref|NP_564378.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 49/70 (70.00%), Postives = 59/70 (84.29%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENTTN 71
          P  KP+N+ N
Sbjct: 61 PHAKPDNSHN 69

[Close]

BLAST of CSPI05G08790 vs. NCBI nr
Match: gi|297846542|ref|XP_002891152.1| (hypothetical protein ARALYDRAFT_473639 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR +IRTN Q++G P PPPG+ AA SP  L 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRHEIRTNPQVYGAPAPPPGAIAASSP-PLS 60

Query: 61 PVFKPENT 69
          P  KP+N+
Sbjct: 61 PQTKPDNS 67

The following BLAST results are available for this feature:

BLAST of CSPI05G08790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI05G08790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRY6_CUCSA	1.1e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175840 PE=4 SV=1	[more]
R0I4P3_9BRAS	6.1e-19	70.00	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010814mg PE=4 SV=1	[more]
Q8LG39_ARATH	7.9e-19	70.00	At1g31335 OS=Arabidopsis thaliana GN=At1g31335 PE=2 SV=1	[more]
D7KL22_ARALL	2.3e-18	70.59	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A161XIK6_DAUCA	8.8e-18	77.05	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007806 PE=4 SV=1	[more]

BLAST of CSPI05G08790 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31335.1	4.0e-22	70.00	unknown protein	[more]

BLAST of CSPI05G08790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451725\|ref\|XP_004143612.1\|	1.5e-31	100.00	PREDICTED: uncharacterized protein LOC101203814 [Cucumis sativus]	[more]
gi\|659090148\|ref\|XP_008445862.1\|	7.6e-31	98.57	PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo]	[more]
gi\|565493444\|ref\|XP_006304361.1\|	8.7e-19	70.00	hypothetical protein CARUB_v10010814mg [Capsella rubella]	[more]
gi\|18397903\|ref\|NP_564378.1\|	1.1e-18	70.00	uncharacterized protein [Arabidopsis thaliana]	[more]
gi\|297846542\|ref\|XP_002891152.1\|	3.3e-18	70.59	hypothetical protein ARALYDRAFT_473639 [Arabidopsis lyrata subsp. lyrata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G08790.1	CSPI05G08790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33727	FAMILY NOT NAMED	coord: 1..70 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G08790	Cla020070	Watermelon (97103) v1	cpiwmB440
CSPI05G08790	Csa5G175840	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G08790	MELO3C011733	Melon (DHL92) v3.5.1	cpimeB360
CSPI05G08790	ClCG02G013940	Watermelon (Charleston Gray)	cpiwcgB398
CSPI05G08790	Lsi04G008090	Bottle gourd (USVL1VR-Ls)	cpilsiB366
CSPI05G08790	MELO3C011733.2	Melon (DHL92) v3.6.1	cpimedB350
CSPI05G08790	CsaV3_5G006230	Cucumber (Chinese Long) v3	cpicucB285
CSPI05G08790	Cla97C02G039590	Watermelon (97103) v2	cpiwmbB385
CSPI05G08790	CmaCh04G012450	Cucurbita maxima (Rimu)	cmacpiB756
CSPI05G08790	CmoCh04G013180	Cucurbita moschata (Rifu)	cmocpiB746
CSPI05G08790	Carg25672	Silver-seed gourd	carcpiB0887

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G08790	Wax gourd	cpiwgoB518
CSPI05G08790	Cucumber (Gy14) v1	cgycpiB258
CSPI05G08790	Cucurbita maxima (Rimu)	cmacpiB757
CSPI05G08790	Cucurbita moschata (Rifu)	cmocpiB747
CSPI05G08790	Cucurbita pepo (Zucchini)	cpecpiB437
CSPI05G08790	Cucurbita pepo (Zucchini)	cpecpiB438
CSPI05G08790	Cucumber (Gy14) v2	cgybcpiB226
CSPI05G08790	Silver-seed gourd	carcpiB0878