CmoCh04G013180 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaC05g25270D protein
Location	Cmo_Chr04 : 6722751 .. 6722966 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGGTGATGGTGATCTCTCTGCCACTCATTTTCTTCTGCTTGCTGCTCGGTTTCGGGTGTTACTTTCTCGGCCGAGCAAAAGGGAGACGAGACATAAGGACCAATGCTCAGACATTTGGGGTGCCCATGCCGCCTCCCGGTATCGCCACCACTCATTCCCTATCGCCACCGCAGCCGATTTTCAAACCTGATAATGCCATCAATGTTTGA

mRNA sequence

ATGGGTTTGGTGATGGTGATCTCTCTGCCACTCATTTTCTTCTGCTTGCTGCTCGGTTTCGGGTGTTACTTTCTCGGCCGAGCAAAAGGGAGACGAGACATAAGGACCAATGCTCAGACATTTGGGGTGCCCATGCCGCCTCCCGGTATCGCCACCACTCATTCCCTATCGCCACCGCAGCCGATTTTCAAACCTGATAATGCCATCAATGTTTGA

Coding sequence (CDS)

ATGGGTTTGGTGATGGTGATCTCTCTGCCACTCATTTTCTTCTGCTTGCTGCTCGGTTTCGGGTGTTACTTTCTCGGCCGAGCAAAAGGGAGACGAGACATAAGGACCAATGCTCAGACATTTGGGGTGCCCATGCCGCCTCCCGGTATCGCCACCACTCATTCCCTATCGCCACCGCAGCCGATTTTCAAACCTGATAATGCCATCAATGTTTGA

Homology

[Close]

BLAST of CmoCh04G013180 vs. TrEMBL
Match: A0A0A0KRY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175840 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-23
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPPQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLGRAKGR+DIRTNAQ FGVP PPPG    HS S  Q
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60

Query: 61 PIFKPDNAINV 72
          P+FKP+N  NV
Sbjct: 61 PVFKPENTTNV 71

[Close]

BLAST of CmoCh04G013180 vs. TrEMBL
Match: A9PCK5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14790g PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-18
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPPQ 60
          MG+V+VISLPLI FCLLLGFGCY+LGR KGR+D+RTNAQ FGVP+PPPG   T S  PP 
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDVRTNAQVFGVPIPPPG---TASKPPPP 60

Query: 61 PIFKPDNAINV 72
          P  KP N  NV
Sbjct: 61 PHSKPGNLENV 68

[Close]

BLAST of CmoCh04G013180 vs. TrEMBL
Match: A0A078IKG8_BRANA (BnaC05g25270D protein OS=Brassica napus GN=BnaC05g25270D PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-18
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPP- 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+++GRR+I TN Q +G P PPPG   + + SPP 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIHTNPQVYGAPAPPPGAIISAASSPPL 60

Query: 61 QPIFKPDNAINV 72
           P  KPDN+ NV
Sbjct: 61 SPCTKPDNSHNV 72

[Close]

BLAST of CmoCh04G013180 vs. TrEMBL
Match: A0A0D3CF60_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-18
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPP- 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+++GRR+I TN Q +G P PPPG   + + SPP 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIHTNPQVYGAPAPPPGAIISAASSPPL 60

Query: 61 QPIFKPDNAINV 72
           P  KPDN+ NV
Sbjct: 61 SPCTKPDNSHNV 72

[Close]

BLAST of CmoCh04G013180 vs. TrEMBL
Match: A0A078JW10_BRANA (BnaAnng31340D protein OS=Brassica napus GN=BnaAnng31340D PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.2e-18
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPP- 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+ +GRR+I TN Q +G P PPPG   + + SPP 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKTRGRREIHTNPQVYGAPAPPPGAIISAASSPPL 60

Query: 61 QPIFKPDNAINV 72
           P  KPDN+ NV
Sbjct: 61 SPRTKPDNSHNV 72

[Close]

BLAST of CmoCh04G013180 vs. TAIR10
Match: AT1G31335.1 (AT1G31335.1 unknown protein)

HSP 1 Score: 97.1 bits (240), Expect = 4.8e-21
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPPQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+++GRR+IRTN Q +G P PPPG A   S  P  
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPG-AIAASSPPLS 60

Query: 61 PIFKPDNAINV 72
          P  KPDN+ NV
Sbjct: 61 PHAKPDNSHNV 70

[Close]

BLAST of CmoCh04G013180 vs. NCBI nr
Match: gi|659090148|ref|XP_008445862.1| (PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPPQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLGRAKGR+DIRTNAQ FGVP PPPG    HS S  Q
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSQQ 60

Query: 61 PIFKPDNAINV 72
          P+FKP+N  NV
Sbjct: 61 PVFKPENTTNV 71

[Close]

BLAST of CmoCh04G013180 vs. NCBI nr
Match: gi|449451725|ref|XP_004143612.1| (PREDICTED: uncharacterized protein LOC101203814 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-23
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPPQ 60
          MGLV+VISLPLIFFCLLLGFGCYFLGRAKGR+DIRTNAQ FGVP PPPG    HS S  Q
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSLQ 60

Query: 61 PIFKPDNAINV 72
          P+FKP+N  NV
Sbjct: 61 PVFKPENTTNV 71

[Close]

BLAST of CmoCh04G013180 vs. NCBI nr
Match: gi|566162686|ref|XP_002303699.2| (hypothetical protein POPTR_0003s14790g [Populus trichocarpa])

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-18
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPPQ 60
          MG+V+VISLPLI FCLLLGFGCY+LGR KGR+D+RTNAQ FGVP+PPPG   T S  PP 
Sbjct: 1  MGMVVVISLPLIIFCLLLGFGCYYLGRYKGRQDVRTNAQVFGVPIPPPG---TASKPPPP 60

Query: 61 PIFKPDNAINV 72
          P  KP N  NV
Sbjct: 61 PHSKPGNLENV 68

[Close]

BLAST of CmoCh04G013180 vs. NCBI nr
Match: gi|922490456|ref|XP_013584841.1| (PREDICTED: uncharacterized protein LOC106293733 [Brassica oleracea var. oleracea])

HSP 1 Score: 98.6 bits (244), Expect = 4.7e-18
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPP- 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+++GRR+I TN Q +G P PPPG   + + SPP 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIHTNPQVYGAPAPPPGAIISAASSPPL 60

Query: 61 QPIFKPDNAINV 72
           P  KPDN+ NV
Sbjct: 61 SPCTKPDNSHNV 72

[Close]

BLAST of CmoCh04G013180 vs. NCBI nr
Match: gi|685361101|ref|XP_009114991.1| (PREDICTED: uncharacterized protein LOC103840251 [Brassica rapa])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRRDIRTNAQTFGVPMPPPGIATTHSLSPP- 60
          MGLV+VISLPLIFFCLLLGFGCYFLG+ +GRR+I TN Q +G P PPPG   + + SPP 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKTRGRREIHTNPQVYGAPAPPPGAIISAASSPPL 60

Query: 61 QPIFKPDNAINV 72
           P  KPDN+ NV
Sbjct: 61 SPRTKPDNSHNV 72

The following BLAST results are available for this feature:

BLAST of CmoCh04G013180 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G013180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRY6_CUCSA	2.0e-23	78.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G175840 PE=4 SV=1	[more]
A9PCK5_POPTR	2.5e-18	70.42	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14790g PE=2 SV=1	[more]
A0A078IKG8_BRANA	3.3e-18	66.67	BnaC05g25270D protein OS=Brassica napus GN=BnaC05g25270D PE=4 SV=1	[more]
A0A0D3CF60_BRAOL	3.3e-18	66.67	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A078JW10_BRANA	7.2e-18	66.67	BnaAnng31340D protein OS=Brassica napus GN=BnaAnng31340D PE=4 SV=1	[more]

BLAST of CmoCh04G013180 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31335.1	4.8e-21	69.01	unknown protein	[more]

BLAST of CmoCh04G013180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090148\|ref\|XP_008445862.1\|	1.7e-23	78.87	PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo]	[more]
gi\|449451725\|ref\|XP_004143612.1\|	2.8e-23	78.87	PREDICTED: uncharacterized protein LOC101203814 [Cucumis sativus]	[more]
gi\|566162686\|ref\|XP_002303699.2\|	3.6e-18	70.42	hypothetical protein POPTR_0003s14790g [Populus trichocarpa]	[more]
gi\|922490456\|ref\|XP_013584841.1\|	4.7e-18	66.67	PREDICTED: uncharacterized protein LOC106293733 [Brassica oleracea var. oleracea...	[more]
gi\|685361101\|ref\|XP_009114991.1\|	1.0e-17	66.67	PREDICTED: uncharacterized protein LOC103840251 [Brassica rapa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013180.1	CmoCh04G013180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33727	FAMILY NOT NAMED	coord: 1..71 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G013180	CmaCh04G012450	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G013180	Cla020070	Watermelon (97103) v1	cmowmB719
CmoCh04G013180	Csa5G175840	Cucumber (Chinese Long) v2	cmocuB736
CmoCh04G013180	ClCG02G013940	Watermelon (Charleston Gray)	cmowcgB643
CmoCh04G013180	CSPI05G08790	Wild cucumber (PI 183967)	cmocpiB746
CmoCh04G013180	Lsi04G008090	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G013180	CsaV3_5G006230	Cucumber (Chinese Long) v3	cmocucB0872
CmoCh04G013180	Cla97C02G039590	Watermelon (97103) v2	cmowmbB713
CmoCh04G013180	Carg25672	Silver-seed gourd	carcmoB1149

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013180	Wax gourd	cmowgoB0891
CmoCh04G013180	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G013180	Cucumber (Gy14) v1	cgycmoB0475
CmoCh04G013180	Cucurbita maxima (Rimu)	cmacmoB730
CmoCh04G013180	Melon (DHL92) v3.5.1	cmomeB644
CmoCh04G013180	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G013180	Cucurbita pepo (Zucchini)	cmocpeB675
CmoCh04G013180	Cucumber (Gy14) v2	cgybcmoB651
CmoCh04G013180	Melon (DHL92) v3.6.1	cmomedB734
CmoCh04G013180	Silver-seed gourd	carcmoB1138
CmoCh04G013180	Cucumber (Chinese Long) v3	cmocucB0840