Csa5G154820 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G154820
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 5213583 .. 5213795 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTCTTCATTCCCGACGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCCAAGCCCCCGTCAAGACCAGGCACCCACACCCCGCCGATCAACGGCCGAGGAATTCCGACAAGGAAAAAGAAGCTCCCGCAAAAACTGGATTATTCCGGTTCACCGCCACCGGCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

mRNA sequence

ATGGATGTCTTCATTCCCGACGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCCAAGCCCCCGTCAAGACCAGGCACCCACACCCCGCCGATCAACGGCCGAGGAATTCCGACAAGGAAAAAGAAGCTCCCGCAAAAACTGGATTATTCCGGTTCACCGCCACCGGCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

Coding sequence (CDS)

ATGGATGTCTTCATTCCCGACGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCCAAGCCCCCGTCAAGACCAGGCACCCACACCCCGCCGATCAACGGCCGAGGAATTCCGACAAGGAAAAAGAAGCTCCCGCAAAAACTGGATTATTCCGGTTCACCGCCACCGGCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

Protein sequence

MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGADNVVFNCFSA*
Homology
[Close]
BLAST of Csa5G154820 vs. TrEMBL
Match: A0A0A0KKA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60
          MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFNCFSA 71
          DNVVFNCFSA
Sbjct: 61 DNVVFNCFSA 70

[Close]
BLAST of Csa5G154820 vs. NCBI nr
Match: gi|700194943|gb|KGN50120.1| (hypothetical protein Csa_5G154820 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60
          MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFNCFSA 71
          DNVVFNCFSA
Sbjct: 61 DNVVFNCFSA 70

[Close]
BLAST of Csa5G154820 vs. NCBI nr
Match: gi|659073763|ref|XP_008437240.1| (PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo])

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 60/73 (82.19%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPR---NSDKEKEAPAKTGLFRFTA 60
          MDVFIP+DYVIRRRIEKKLAAQAP KTR P P DQRPR   + DKEKE P KTG FRFTA
Sbjct: 1  MDVFIPEDYVIRRRIEKKLAAQAPDKTRQPRPVDQRPRRNSDKDKEKETPGKTG-FRFTA 60

Query: 61 TGADNVVFNCFSA 71
          TGADNVVFNCFSA
Sbjct: 61 TGADNVVFNCFSA 72

The following BLAST results are available for this feature:
BLAST of Csa5G154820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKA7_CUCSA1.0e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1[more]
BLAST of Csa5G154820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194943|gb|KGN50120.1|1.5e-32100.00hypothetical protein Csa_5G154820 [Cucumis sativus][more]
gi|659073763|ref|XP_008437240.1|1.7e-2382.19PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G154820.1Csa5G154820.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G154820Cla011468Watermelon (97103) v1cuwmB408
Csa5G154820MELO3C005654Melon (DHL92) v3.5.1cumeB357
Csa5G154820ClCG01G002920Watermelon (Charleston Gray)cuwcgB364
Csa5G154820Lsi09G002810Bottle gourd (USVL1VR-Ls)culsiB322
Csa5G154820MELO3C005654.2Melon (DHL92) v3.6.1cumedB336
Csa5G154820Cla97C01G003000Watermelon (97103) v2cuwmbB336
Csa5G154820CSPI05G05640Wild cucumber (PI 183967)cpicuB240
Csa5G154820Cp4.1LG05g03510Cucurbita pepo (Zucchini)cpecuB736
Csa5G154820CsGy5G002900Cucumber (Gy14) v2cgybcuB224
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G154820Wax gourdcuwgoB451
Csa5G154820Wax gourdcuwgoB479
Csa5G154820Cucumber (Gy14) v1cgycuB434
Csa5G154820Cucurbita maxima (Rimu)cmacuB298
Csa5G154820Cucurbita maxima (Rimu)cmacuB344
Csa5G154820Cucurbita maxima (Rimu)cmacuB420
Csa5G154820Cucurbita maxima (Rimu)cmacuB608
Csa5G154820Cucurbita moschata (Rifu)cmocuB286
Csa5G154820Cucurbita moschata (Rifu)cmocuB332
Csa5G154820Cucurbita moschata (Rifu)cmocuB411
Csa5G154820Cucurbita moschata (Rifu)cmocuB598
Csa5G154820Melon (DHL92) v3.5.1cumeB405
Csa5G154820Cucurbita pepo (Zucchini)cpecuB046
Csa5G154820Cucurbita pepo (Zucchini)cpecuB174
Csa5G154820Cucurbita pepo (Zucchini)cpecuB226
Csa5G154820Bottle gourd (USVL1VR-Ls)culsiB376
Csa5G154820Cucumber (Gy14) v2cgybcuB128
Csa5G154820Melon (DHL92) v3.6.1cumedB391
Csa5G154820Silver-seed gourdcarcuB0939
Csa5G154820Silver-seed gourdcarcuB0954