Cp4.1LG05g03510 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g03510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG05 : 1774091 .. 1774297 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTTTTATTCCCGAAGATTACGTCACTCGCCGTCGCATCGAGAAACAAGCCGCCGCCAAGGAGAGGCGGCCGGAGCCCATCAAAGGACGCGCCCTCCGGCCAACTTCCGAGAAGGAGAAGTCTGTCGACGCTGGAAAAACGGGATTCCGGTTGGGTCACACCGGCTCAGACAATGTGGTTTACACTTGCTTCTCTGCCTGA

mRNA sequence

ATGGATGTTTTTATTCCCGAAGATTACGTCACTCGCCGTCGCATCGAGAAACAAGCCGCCGCCAAGGAGAGGCGGCCGGAGCCCATCAAAGGACGCGCCCTCCGGCCAACTTCCGAGAAGGAGAAGTCTGTCGACGCTGGAAAAACGGGATTCCGGTTGGGTCACACCGGCTCAGACAATGTGGTTTACACTTGCTTCTCTGCCTGA

Coding sequence (CDS)

ATGGATGTTTTTATTCCCGAAGATTACGTCACTCGCCGTCGCATCGAGAAACAAGCCGCCGCCAAGGAGAGGCGGCCGGAGCCCATCAAAGGACGCGCCCTCCGGCCAACTTCCGAGAAGGAGAAGTCTGTCGACGCTGGAAAAACGGGATTCCGGTTGGGTCACACCGGCTCAGACAATGTGGTTTACACTTGCTTCTCTGCCTGA

Protein sequence

MDVFIPEDYVTRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFRLGHTGSDNVVYTCFSA

Homology

[Close]

BLAST of Cp4.1LG05g03510 vs. TrEMBL
Match: A0A0A0KKA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 42/73 (57.53%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MDVFIPEDYVTRRRIEK----QAAAKERRPEPIKGRALRPTSEKEKSVDAGKTG-FRLGH 60
          MDVFIP+DYV RRRIEK    QA  K R P P   R     S+KEK   A KTG FR   
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRP--RNSDKEKEAPA-KTGLFRFTA 60

Query: 61 TGSDNVVYTCFSA 69
          TG+DNVV+ CFSA
Sbjct: 61 TGADNVVFNCFSA 70

[Close]

BLAST of Cp4.1LG05g03510 vs. NCBI nr
Match: gi|659073763|ref|XP_008437240.1| (PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 1  MDVFIPEDYVTRRRIEKQAAA----KERRPEPIKGRALRPTSEKEKSVDAGKTGFRLGHT 60
          MDVFIPEDYV RRRIEK+ AA    K R+P P+  R  R + + ++    GKTGFR   T
Sbjct: 1  MDVFIPEDYVIRRRIEKKLAAQAPDKTRQPRPVDQRPRRNSDKDKEKETPGKTGFRFTAT 60

Query: 61 GSDNVVYTCFSA 69
          G+DNVV+ CFSA
Sbjct: 61 GADNVVFNCFSA 72

[Close]

BLAST of Cp4.1LG05g03510 vs. NCBI nr
Match: gi|700194943|gb|KGN50120.1| (hypothetical protein Csa_5G154820 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 42/73 (57.53%), Postives = 46/73 (63.01%), Query Frame = 1


Query: 1  MDVFIPEDYVTRRRIEK----QAAAKERRPEPIKGRALRPTSEKEKSVDAGKTG-FRLGH 60
          MDVFIP+DYV RRRIEK    QA  K R P P   R     S+KEK   A KTG FR   
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRP--RNSDKEKEAPA-KTGLFRFTA 60

Query: 61 TGSDNVVYTCFSA 69
          TG+DNVV+ CFSA
Sbjct: 61 TGADNVVFNCFSA 70

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g03510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g03510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKA7_CUCSA	1.4e-07	57.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g03510 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g03510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659073763\|ref\|XP_008437240.1\|	1.2e-10	55.56	PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo]	[more]
gi\|700194943\|gb\|KGN50120.1\|	2.1e-07	57.53	hypothetical protein Csa_5G154820 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g03510.1	Cp4.1LG05g03510.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g03510	Csa5G154820	Cucumber (Chinese Long) v2	cpecuB736
Cp4.1LG05g03510	MELO3C005654	Melon (DHL92) v3.5.1	cpemeB647
Cp4.1LG05g03510	CSPI05G05640	Wild cucumber (PI 183967)	cpecpiB738
Cp4.1LG05g03510	Lsi09G002810	Bottle gourd (USVL1VR-Ls)	cpelsiB582
Cp4.1LG05g03510	MELO3C005654.2	Melon (DHL92) v3.6.1	cpemedB774
Cp4.1LG05g03510	CsaV3_5G003010	Cucumber (Chinese Long) v3	cpecucB0915
Cp4.1LG05g03510	CsGy5G002900	Cucumber (Gy14) v2	cgybcpeB691

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g03510	Cucurbita pepo (Zucchini)	cpecpeB226
Cp4.1LG05g03510	Cucumber (Gy14) v1	cgycpeB0792
Cp4.1LG05g03510	Cucurbita maxima (Rimu)	cmacpeB329
Cp4.1LG05g03510	Cucurbita maxima (Rimu)	cmacpeB647
Cp4.1LG05g03510	Cucurbita moschata (Rifu)	cmocpeB292
Cp4.1LG05g03510	Cucurbita moschata (Rifu)	cmocpeB596
Cp4.1LG05g03510	Watermelon (Charleston Gray)	cpewcgB639
Cp4.1LG05g03510	Watermelon (Charleston Gray)	cpewcgB680
Cp4.1LG05g03510	Watermelon (97103) v1	cpewmB717
Cp4.1LG05g03510	Cucumber (Gy14) v2	cgybcpeB427
Cp4.1LG05g03510	Melon (DHL92) v3.6.1	cpemedB831
Cp4.1LG05g03510	Silver-seed gourd	carcpeB1282
Cp4.1LG05g03510	Silver-seed gourd	carcpeB1298
Cp4.1LG05g03510	Cucumber (Chinese Long) v3	cpecucB0896
Cp4.1LG05g03510	Wax gourd	cpewgoB0910
Cp4.1LG05g03510	Wax gourd	cpewgoB0929