Cp4.1LG05g03510.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g03510.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 1774091 .. 1774297 (+)
Sequence length207
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTTTTATTCCCGAAGATTACGTCACTCGCCGTCGCATCGAGAAACAAGCCGCCGCCAAGGAGAGGCGGCCGGAGCCCATCAAAGGACGCGCCCTCCGGCCAACTTCCGAGAAGGAGAAGTCTGTCGACGCTGGAAAAACGGGATTCCGGTTGGGTCACACCGGCTCAGACAATGTGGTTTACACTTGCTTCTCTGCCTGA

mRNA sequence

ATGGATGTTTTTATTCCCGAAGATTACGTCACTCGCCGTCGCATCGAGAAACAAGCCGCCGCCAAGGAGAGGCGGCCGGAGCCCATCAAAGGACGCGCCCTCCGGCCAACTTCCGAGAAGGAGAAGTCTGTCGACGCTGGAAAAACGGGATTCCGGTTGGGTCACACCGGCTCAGACAATGTGGTTTACACTTGCTTCTCTGCCTGA

Coding sequence (CDS)

ATGGATGTTTTTATTCCCGAAGATTACGTCACTCGCCGTCGCATCGAGAAACAAGCCGCCGCCAAGGAGAGGCGGCCGGAGCCCATCAAAGGACGCGCCCTCCGGCCAACTTCCGAGAAGGAGAAGTCTGTCGACGCTGGAAAAACGGGATTCCGGTTGGGTCACACCGGCTCAGACAATGTGGTTTACACTTGCTTCTCTGCCTGA

Protein sequence

MDVFIPEDYVTRRRIEKQAAAKERRPEPIKGRALRPTSEKEKSVDAGKTGFRLGHTGSDNVVYTCFSA
Homology
[Close]
BLAST of Cp4.1LG05g03510.1 vs. TrEMBL
Match: A0A0A0KKA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 42/73 (57.53%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MDVFIPEDYVTRRRIEK----QAAAKERRPEPIKGRALRPTSEKEKSVDAGKTG-FRLGH 60
          MDVFIP+DYV RRRIEK    QA  K R P P   R     S+KEK   A KTG FR   
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRP--RNSDKEKEAPA-KTGLFRFTA 60

Query: 61 TGSDNVVYTCFSA 69
          TG+DNVV+ CFSA
Sbjct: 61 TGADNVVFNCFSA 70

[Close]
BLAST of Cp4.1LG05g03510.1 vs. NCBI nr
Match: gi|659073763|ref|XP_008437240.1| (PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-10
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 1 

Query: 1  MDVFIPEDYVTRRRIEKQAAA----KERRPEPIKGRALRPTSEKEKSVDAGKTGFRLGHT 60
          MDVFIPEDYV RRRIEK+ AA    K R+P P+  R  R + + ++    GKTGFR   T
Sbjct: 1  MDVFIPEDYVIRRRIEKKLAAQAPDKTRQPRPVDQRPRRNSDKDKEKETPGKTGFRFTAT 60

Query: 61 GSDNVVYTCFSA 69
          G+DNVV+ CFSA
Sbjct: 61 GADNVVFNCFSA 72

[Close]
BLAST of Cp4.1LG05g03510.1 vs. NCBI nr
Match: gi|700194943|gb|KGN50120.1| (hypothetical protein Csa_5G154820 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 42/73 (57.53%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 1  MDVFIPEDYVTRRRIEK----QAAAKERRPEPIKGRALRPTSEKEKSVDAGKTG-FRLGH 60
          MDVFIP+DYV RRRIEK    QA  K R P P   R     S+KEK   A KTG FR   
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRP--RNSDKEKEAPA-KTGLFRFTA 60

Query: 61 TGSDNVVYTCFSA 69
          TG+DNVV+ CFSA
Sbjct: 61 TGADNVVFNCFSA 70

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g03510.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g03510.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKA7_CUCSA1.4e-0757.53Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1[more]
BLAST of Cp4.1LG05g03510.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g03510.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073763|ref|XP_008437240.1|1.2e-1055.56PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo][more]
gi|700194943|gb|KGN50120.1|2.1e-0757.53hypothetical protein Csa_5G154820 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG05g03510Cp4.1LG05g03510gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG05g03510.1:cds:001Cp4.1LG05g03510.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG05g03510.1Cp4.1LG05g03510.1-proteinpolypeptide