Cla011468 (gene) Watermelon (97103) v1

Overview
NameCla011468
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 2745946 .. 2746152 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGTCTTTATTCCCGAAGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCGCAGCCGCTGAAGAGAGGCAGCCGGAGGCCGTCACCGCACGGCGGAGGATTTCCGATAAGGAGAAGGGAGCTGCCGGAAAAAATGGATTCCGGTTCCCCACTACCGCCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

mRNA sequence

ATGGACGTCTTTATTCCCGAAGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCGCAGCCGCTGAAGAGAGGCAGCCGGAGGCCGTCACCGCACGGCGGAGGATTTCCGATAAGGAGAAGGGAGCTGCCGGAAAAAATGGATTCCGGTTCCCCACTACCGCCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

Coding sequence (CDS)

ATGGACGTCTTTATTCCCGAAGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCGCAGCCGCTGAAGAGAGGCAGCCGGAGGCCGTCACCGCACGGCGGAGGATTTCCGATAAGGAGAAGGGAGCTGCCGGAAAAAATGGATTCCGGTTCCCCACTACCGCCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

Protein sequence

MDVFIPEDYVIRRRIEKKLAAAAAEERQPEAVTARRRISDKEKGAAGKNGFRFPTTAADNVVFNCFSA
Homology
[Close]
BLAST of Cla011468 vs. TrEMBL
Match: A0A0A0KKA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-14
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 1  MDVFIPEDYVIRRRIEKKLAA-AAAEERQPEAVTARRRISDKEKGAAGKNG-FRFPTTAA 60
          MDVFIP+DYVIRRRIEKKLAA A  + R P     R R SDKEK A  K G FRF  T A
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFNCFSA 69
          DNVVFNCFSA
Sbjct: 61 DNVVFNCFSA 70

[Close]
BLAST of Cla011468 vs. TrEMBL
Match: A0A0D2MPN2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G160100 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-06
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 1 

Query: 1  MDVFIPEDYVIRRRIEKKLAAAAAEERQPEAVTARRRISDKEK-------GAAGKNGFRF 60
          MDVFIPE+YVIRRR EKK  A  AEER    V A +R   + K       G AG NGF  
Sbjct: 1  MDVFIPEEYVIRRRFEKK-EATIAEERSNMVVKASQRNEVETKSLPLLLYGRAGTNGFVA 60

Query: 61 PTTAADNVVFNCFSA 69
               +N+VF+C SA
Sbjct: 61 SGGINENIVFSCLSA 74

[Close]
BLAST of Cla011468 vs. NCBI nr
Match: gi|659073763|ref|XP_008437240.1| (PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 50/72 (69.44%), Postives = 53/72 (73.61%), Query Frame = 1 

Query: 1  MDVFIPEDYVIRRRIEKKLAAAAAEE-RQPEAVTARRRIS---DKEKGAAGKNGFRFPTT 60
          MDVFIPEDYVIRRRIEKKLAA A ++ RQP  V  R R +   DKEK   GK GFRF  T
Sbjct: 1  MDVFIPEDYVIRRRIEKKLAAQAPDKTRQPRPVDQRPRRNSDKDKEKETPGKTGFRFTAT 60

Query: 61 AADNVVFNCFSA 69
           ADNVVFNCFSA
Sbjct: 61 GADNVVFNCFSA 72

[Close]
BLAST of Cla011468 vs. NCBI nr
Match: gi|700194943|gb|KGN50120.1| (hypothetical protein Csa_5G154820 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-14
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 1  MDVFIPEDYVIRRRIEKKLAA-AAAEERQPEAVTARRRISDKEKGAAGKNG-FRFPTTAA 60
          MDVFIP+DYVIRRRIEKKLAA A  + R P     R R SDKEK A  K G FRF  T A
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFNCFSA 69
          DNVVFNCFSA
Sbjct: 61 DNVVFNCFSA 70

[Close]
BLAST of Cla011468 vs. NCBI nr
Match: gi|763753319|gb|KJB20707.1| (hypothetical protein B456_003G160100 [Gossypium raimondii])

HSP 1 Score: 58.5 bits (140), Expect = 5.1e-06
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 1 

Query: 1  MDVFIPEDYVIRRRIEKKLAAAAAEERQPEAVTARRRISDKEK-------GAAGKNGFRF 60
          MDVFIPE+YVIRRR EKK  A  AEER    V A +R   + K       G AG NGF  
Sbjct: 1  MDVFIPEEYVIRRRFEKK-EATIAEERSNMVVKASQRNEVETKSLPLLLYGRAGTNGFVA 60

Query: 61 PTTAADNVVFNCFSA 69
               +N+VF+C SA
Sbjct: 61 SGGINENIVFSCLSA 74

The following BLAST results are available for this feature:
BLAST of Cla011468 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKA7_CUCSA2.1e-1468.57Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154820 PE=4 SV=1[more]
A0A0D2MPN2_GOSRA3.6e-0649.33Uncharacterized protein OS=Gossypium raimondii GN=B456_003G160100 PE=4 SV=1[more]
BLAST of Cla011468 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659073763|ref|XP_008437240.1|1.6e-1569.44PREDICTED: uncharacterized protein LOC103482727 [Cucumis melo][more]
gi|700194943|gb|KGN50120.1|3.0e-1468.57hypothetical protein Csa_5G154820 [Cucumis sativus][more]
gi|763753319|gb|KJB20707.1|5.1e-0649.33hypothetical protein B456_003G160100 [Gossypium raimondii][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011468Cla011468.1mRNA