Cla97C01G003000 (gene) Watermelon (97103) v2

Overview
NameCla97C01G003000
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionNucleotide binding, putative
LocationCla97Chr01 : 2805066 .. 2805272 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGTCTTTATTCCCGAAGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCGCAGCCGCTGAAGAGAGGCAGCCGGAGGCCGTCACCGCACGGCGGAGGATTTCCGATAAGGAGAAGGGAGCTGCCGGAAAAAATGGATTCCGGTTCCCCACTACCGCCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

mRNA sequence

ATGGACGTCTTTATTCCCGAAGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCGCAGCCGCTGAAGAGAGGCAGCCGGAGGCCGTCACCGCACGGCGGAGGATTTCCGATAAGGAGAAGGGAGCTGCCGGAAAAAATGGATTCCGGTTCCCCACTACCGCCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

Coding sequence (CDS)

ATGGACGTCTTTATTCCCGAAGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCGCAGCCGCTGAAGAGAGGCAGCCGGAGGCCGTCACCGCACGGCGGAGGATTTCCGATAAGGAGAAGGGAGCTGCCGGAAAAAATGGATTCCGGTTCCCCACTACCGCCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

Protein sequence

MDVFIPEDYVIRRRIEKKLAAAAAEERQPEAVTARRRISDKEKGAAGKNGFRFPTTAADNVVFNCFSA
Homology
[Close]
BLAST of Cla97C01G003000 vs. NCBI nr
Match: KGN50120.1 (hypothetical protein Csa_5G154820 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-04
Identity = 35/70 (50.00%), Postives = 36/70 (51.43%), Query Frame = 0 

Query: 1  MDVFIPEDYVI-RRXXXXXXXXXXXXXXXXXXXXXXXXISDKEKGAAGKNG-FRFPTTAA 60
          MDVFIP+DYVI RR                         SDKEK A  K G FRF  T A
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFNCFSA 69
          DNVVFNCFSA
Sbjct: 61 DNVVFNCFSA 70

[Close]
BLAST of Cla97C01G003000 vs. TrEMBL
Match: tr|A0A0A0KKA7|A0A0A0KKA7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.3e-05
Identity = 35/70 (50.00%), Postives = 36/70 (51.43%), Query Frame = 0 

Query: 1  MDVFIPEDYVI-RRXXXXXXXXXXXXXXXXXXXXXXXXISDKEKGAAGKNG-FRFPTTAA 60
          MDVFIP+DYVI RR                         SDKEK A  K G FRF  T A
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFNCFSA 69
          DNVVFNCFSA
Sbjct: 61 DNVVFNCFSA 70

The following BLAST results are available for this feature:
BLAST of Cla97C01G003000 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50120.11.1e-0450.00hypothetical protein Csa_5G154820 [Cucumis sativus][more]
BLAST of Cla97C01G003000 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KKA7|A0A0A0KKA7_CUCSA7.3e-0550.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1[more]
BLAST of Cla97C01G003000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G003000 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G003000.1Cla97C01G003000.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G003000Cla011468Watermelon (97103) v1wmwmbB235
Cla97C01G003000Csa5G154820Cucumber (Chinese Long) v2cuwmbB336
Cla97C01G003000MELO3C005654Melon (DHL92) v3.5.1mewmbB008
Cla97C01G003000ClCG01G002920Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G003000CSPI05G05640Wild cucumber (PI 183967)cpiwmbB349
Cla97C01G003000Lsi09G002810Bottle gourd (USVL1VR-Ls)lsiwmbB007
Cla97C01G003000CsGy5G002900Cucumber (Gy14) v2cgybwmbB319
Cla97C01G003000MELO3C005654.2Melon (DHL92) v3.6.1medwmbB006
Cla97C01G003000CsaV3_5G003010Cucumber (Chinese Long) v3cucwmbB351
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G003000Wax gourdwgowmbB061
Cla97C01G003000Wax gourdwgowmbB165
Cla97C01G003000Silver-seed gourdcarwmbB0963
Cla97C01G003000Silver-seed gourdcarwmbB0980
Cla97C01G003000Cucumber (Gy14) v1cgywmbB520
Cla97C01G003000Cucurbita maxima (Rimu)cmawmbB288
Cla97C01G003000Cucurbita maxima (Rimu)cmawmbB330
Cla97C01G003000Cucurbita maxima (Rimu)cmawmbB403
Cla97C01G003000Cucurbita maxima (Rimu)cmawmbB600
Cla97C01G003000Cucurbita moschata (Rifu)cmowmbB270
Cla97C01G003000Cucurbita moschata (Rifu)cmowmbB313
Cla97C01G003000Cucurbita moschata (Rifu)cmowmbB387
Cla97C01G003000Cucurbita moschata (Rifu)cmowmbB575
Cla97C01G003000Bottle gourd (USVL1VR-Ls)lsiwmbB315
Cla97C01G003000Melon (DHL92) v3.6.1medwmbB412
Cla97C01G003000Melon (DHL92) v3.5.1mewmbB424