Csa5G139330 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G139330
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 3499901 .. 3500685 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAACCCTTTGCTTCTTACAAATTACCCCTCTCTTTCTCTCAAGCTTCAACACAACACAATGTCCCTAAAAGTACTTAAATTCTTTCTCCTCTTTCTCCTTTCAATCTCCATTCCTTTCTCTTCAGGTAACGTTTGTTTAGTTTTGTAATCTCGTCCCCTTAATGAATAATGCTAATATATATATATATATACTCTTTTCGTTTAGGAATGGTGGTTGAACCACTTCGAGACGACATGATTGCATATAAGTCAATTTTCAAGGTAACTATAGTGTTTTTTGAAAAGAGAAGTAAACAAAGAAAATTCAAGAGCAAAGTTATATCCAATAAATTTCAAGATATTTCTTACCTAGTTTCAAGAAACTAAATGATTTGTCGTTCTTTTTCTTCTTCAACGTGAAAAGATGGGAGGCATCCAAATGAATGGAAGGAAGCTTATGACACTCGACCTACAAGACTACGATGAAACAAAAGCAAATAATAGACACGATCCGAAGAAGCCAGGAAATGGAAAGCCTTGAGTTAGCCTCTCTTTGCCCTCGTGGTTTAAATAACGTGAAAGCACTTCCTATCTTACTTTACCAAGATAATGAAAGTGGTATGGCTGTGGATCGAGAATGTATAGTGGCCTTCTAAGATGAGAAACCCTTTAGATATAGCAAGACCTTTGATTCTTTTTTTATCAATTTCAATTTCACTTCCTTCTTATGCGTCTAATGCTCTAGTGGCTTTGAATAACAAGGCCGAGTGCGAGCTTTGTGGTTATGTTTGAGCAGTTATTTAG

mRNA sequence

ATGTCCCTAAAAGTACTTAAATTCTTTCTCCTCTTTCTCCTTTCAATCTCCATTCCTTTCTCTTCAGGAATGGTGGTTGAACCACTTCGAGACGACATGATTGCATATAAGTCAATTTTCAAGATGGGAGGCATCCAAATGAATGGAAGGAAGCTTATGACACTCGACCTACAAGACTACGATGAAACAAAAGCAAATAATAGACACGATCCGAAGAAGCCAGGAAATGGAAAGCCTTGA

Coding sequence (CDS)

ATGTCCCTAAAAGTACTTAAATTCTTTCTCCTCTTTCTCCTTTCAATCTCCATTCCTTTCTCTTCAGGAATGGTGGTTGAACCACTTCGAGACGACATGATTGCATATAAGTCAATTTTCAAGATGGGAGGCATCCAAATGAATGGAAGGAAGCTTATGACACTCGACCTACAAGACTACGATGAAACAAAAGCAAATAATAGACACGATCCGAAGAAGCCAGGAAATGGAAAGCCTTGA

Protein sequence

MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDYDETKANNRHDPKKPGNGKP*

Homology

[Close]

BLAST of Csa5G139330 vs. TrEMBL
Match: A0A0A0KJF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139330 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60
          MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY
Sbjct: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60

Query: 61 DETKANNRHDPKKPGNGKP 80
          DETKANNRHDPKKPGNGKP
Sbjct: 61 DETKANNRHDPKKPGNGKP 79

[Close]

BLAST of Csa5G139330 vs. TrEMBL
Match: B9I1Y0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02450g PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60
          ++L ++K FLL  L +  P SSG V E   + M +Y S+ K  GIQ+N RKL+ +D  DY
Sbjct: 3  LTLGMIKTFLLVSLLLLAPLSSGFV-EGFDEGMNSYPSLHK-DGIQVNTRKLLLVDELDY 62

Query: 61 DETKANNRHDPK-KPGNG 78
          D+  AN RHDP+ +PG G
Sbjct: 63 DDAGANRRHDPRGRPGVG 78

[Close]

BLAST of Csa5G139330 vs. NCBI nr
Match: gi|700194678|gb|KGN49855.1| (hypothetical protein Csa_5G139330 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 6.6e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60
          MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY
Sbjct: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60

Query: 61 DETKANNRHDPKKPGNGKP 80
          DETKANNRHDPKKPGNGKP
Sbjct: 61 DETKANNRHDPKKPGNGKP 79

[Close]

BLAST of Csa5G139330 vs. NCBI nr
Match: gi|645258059|ref|XP_008234706.1| (PREDICTED: uncharacterized protein LOC103333614 isoform X1 [Prunus mume])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 1  MSLKVLKFFLL--FLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLD-- 60
          M+L++  F LL  FL  + IP SSG+V E  ++D I    +    GI MN RKL  LD  
Sbjct: 1  MALRINVFLLLLFFLSLLLIPLSSGIVNEGFKEDGIDPIHLLHKDGIVMNSRKLWMLDAT 60

Query: 61 LQDYDETKANNRHDP-KKPGNGK 79
          +QDYD+T AN +HDP +KPGNG+
Sbjct: 61 MQDYDDTGANQKHDPRRKPGNGR 83

[Close]

BLAST of Csa5G139330 vs. NCBI nr
Match: gi|224120858|ref|XP_002318436.1| (hypothetical protein POPTR_0012s02450g [Populus trichocarpa])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-06
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60
          ++L ++K FLL  L +  P SSG V E   + M +Y S+ K  GIQ+N RKL+ +D  DY
Sbjct: 3  LTLGMIKTFLLVSLLLLAPLSSGFV-EGFDEGMNSYPSLHK-DGIQVNTRKLLLVDELDY 62

Query: 61 DETKANNRHDPK-KPGNG 78
          D+  AN RHDP+ +PG G
Sbjct: 63 DDAGANRRHDPRGRPGVG 78

[Close]

BLAST of Csa5G139330 vs. NCBI nr
Match: gi|1021548241|ref|XP_016165589.1| (PREDICTED: uncharacterized protein LOC107608260 [Arachis ipaensis])

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMI-AYKSIFKMGGIQMNGRKLMTLD-LQ 60
          M L  LK FLL LL +SIPFSSG+ VE  RD+M   +  ++K GG++M  RKL + + + 
Sbjct: 1  MPLINLKPFLLLLLFLSIPFSSGL-VEGFRDNMYPTHHVLYKDGGMKMKLRKLFSHEFVL 60

Query: 61 DYDETKANNRHDPKKPGNG 78
          DYDE  AN +H  KKPG G
Sbjct: 61 DYDEAGANPKH-TKKPGKG 77

[Close]

BLAST of Csa5G139330 vs. NCBI nr
Match: gi|645258061|ref|XP_008234707.1| (PREDICTED: uncharacterized protein LOC103333614 isoform X2 [Prunus mume])

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 1  MSLKVLKFFLL--FLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLD-- 60
          M+L++  F LL  FL  + IP SSG      ++D I    +    GI MN RKL  LD  
Sbjct: 1  MALRINVFLLLLFFLSLLLIPLSSGF-----KEDGIDPIHLLHKDGIVMNSRKLWMLDAT 60

Query: 61 LQDYDETKANNRHDP-KKPGNGK 79
          +QDYD+T AN +HDP +KPGNG+
Sbjct: 61 MQDYDDTGANQKHDPRRKPGNGR 78

The following BLAST results are available for this feature:

BLAST of Csa5G139330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJF2_CUCSA	4.6e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139330 PE=4 SV=1	[more]
B9I1Y0_POPTR	1.4e-06	46.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02450g PE=4 SV=1	[more]

BLAST of Csa5G139330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194678\|gb\|KGN49855.1\|	6.6e-37	100.00	hypothetical protein Csa_5G139330 [Cucumis sativus]	[more]
gi\|645258059\|ref\|XP_008234706.1\|	1.7e-08	48.19	PREDICTED: uncharacterized protein LOC103333614 isoform X1 [Prunus mume]	[more]
gi\|224120858\|ref\|XP_002318436.1\|	2.1e-06	46.15	hypothetical protein POPTR_0012s02450g [Populus trichocarpa]	[more]
gi\|1021548241\|ref\|XP_016165589.1\|	2.7e-06	50.63	PREDICTED: uncharacterized protein LOC107608260 [Arachis ipaensis]	[more]
gi\|645258061\|ref\|XP_008234707.1\|	4.6e-06	45.78	PREDICTED: uncharacterized protein LOC103333614 isoform X2 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU129813	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G139330.1	Csa5G139330.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU129813	CU129813	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34467	FAMILY NOT NAMED	coord: 1..77 score: 1.1
None	No IPR available	PANTHER	PTHR34467:SF1	SUBFAMILY NOT NAMED	coord: 1..77 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G139330	ClCG01G000350	Watermelon (Charleston Gray)	cuwcgB364
Csa5G139330	Cla97C01G000400	Watermelon (97103) v2	cuwmbB336
Csa5G139330	Bhi12G000568	Wax gourd	cuwgoB453
Csa5G139330	CmaCh02G011240	Cucurbita maxima (Rimu)	cmacuB612
Csa5G139330	CmaCh15G010230	Cucurbita maxima (Rimu)	cmacuB292
Csa5G139330	CmoCh02G011530	Cucurbita moschata (Rifu)	cmocuB603
Csa5G139330	CmoCh15G010860	Cucurbita moschata (Rifu)	cmocuB279
Csa5G139330	Cp4.1LG05g05950	Cucurbita pepo (Zucchini)	cpecuB730

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G139330	Watermelon (97103) v2	cuwmbB381
Csa5G139330	Watermelon (97103) v2	cuwmbB384
Csa5G139330	Wax gourd	cuwgoB481
Csa5G139330	Cucumber (Chinese Long) v2	cucuB095
Csa5G139330	Cucumber (Chinese Long) v2	cucuB098
Csa5G139330	Cucumber (Gy14) v1	cgycuB004
Csa5G139330	Cucumber (Gy14) v1	cgycuB309
Csa5G139330	Cucumber (Gy14) v1	cgycuB369
Csa5G139330	Cucurbita maxima (Rimu)	cmacuB342
Csa5G139330	Cucurbita maxima (Rimu)	cmacuB419
Csa5G139330	Cucurbita moschata (Rifu)	cmocuB251
Csa5G139330	Cucurbita moschata (Rifu)	cmocuB329
Csa5G139330	Cucurbita moschata (Rifu)	cmocuB409
Csa5G139330	Melon (DHL92) v3.5.1	cumeB357
Csa5G139330	Melon (DHL92) v3.5.1	cumeB402
Csa5G139330	Watermelon (Charleston Gray)	cuwcgB392
Csa5G139330	Watermelon (Charleston Gray)	cuwcgB395
Csa5G139330	Watermelon (97103) v1	cuwmB397
Csa5G139330	Watermelon (97103) v1	cuwmB402
Csa5G139330	Watermelon (97103) v1	cuwmB408
Csa5G139330	Cucurbita pepo (Zucchini)	cpecuB043
Csa5G139330	Cucurbita pepo (Zucchini)	cpecuB188
Csa5G139330	Cucurbita pepo (Zucchini)	cpecuB225
Csa5G139330	Cucurbita pepo (Zucchini)	cpecuB622
Csa5G139330	Bottle gourd (USVL1VR-Ls)	culsiB322
Csa5G139330	Bottle gourd (USVL1VR-Ls)	culsiB378
Csa5G139330	Bottle gourd (USVL1VR-Ls)	culsiB379
Csa5G139330	Cucumber (Gy14) v2	cgybcuB125
Csa5G139330	Cucumber (Gy14) v2	cgybcuB224
Csa5G139330	Melon (DHL92) v3.6.1	cumedB336
Csa5G139330	Melon (DHL92) v3.6.1	cumedB386
Csa5G139330	Melon (DHL92) v3.6.1	cumedB393
Csa5G139330	Silver-seed gourd	carcuB0301
Csa5G139330	Silver-seed gourd	carcuB0536
Csa5G139330	Silver-seed gourd	carcuB0570
Csa5G139330	Silver-seed gourd	carcuB1005