Cp4.1LG05g05950 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG05g05950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 3608876 .. 3609714 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCTCTTGGAATATACGGATAAGAGCCTAACTCACCTTTTGCTTCCTACAAATTACCTCTCTATCTCTACAGAATTAACAAACCAAAATGGCTTCAAAACTCATCAAATCCTTTCTTCTTCTCCTCCTTTTGGTCTTTGTTGTTGGGTTGTTCTCTTCGGGTAACTTTTTACTTCTGTTTTGGTCTTTCATTCGAGTTGGTTGTGTCGGTGATGATGCTAACGATTTCTTTTTTCGTTTAGGAATGGTCGATCCACTCATGAACGTCAAGATTGCAAACAACTCTATCTTCAAGGTATTGCTAAGTATTACTGTATGCATGCGACTTTTATGATGACTCTATCTTCGAGGATGTCGTATATGAACTGTTCCTTCCAAACTAACTAAATGATTTGGTTTCTTTTCTTCCTCAAATTTGGAAAGGTTTCTAGCTTCCAAATGAAGGCGAGAAAACTGGCACTTGACGTTGATTATGATGACCCTAGAGCCAATAACCGGCATGACCGCAAGAAGCCCGGCAATGGAAAGCCTTGACATAGCCTCACCTAGGCTTATGAGCTCAATAATAACAATATCTTTTAGCTTTACTTTAGTTCAACACGTCTAATGAAAATACTTTAAGTAATTAAGTTATGTTTAGAATAACAAGTTTCCGTCATTACTAATATATTTGTTATGGAACGAGAATGTATATTAGCTTTATCAAATGGGATAGACCTTTTGTAATAAAGCCTAAATCAATGGATACAGTCATCTATCTAATGCTTGTGGCCTCACTGGGGGGAAGTTTGAGCATTTTTTGAATGTGAAATATGAATGATGAGCCAGAGTTTATGTCAG

mRNA sequence

TCCTCTTGGAATATACGGATAAGAGCCTAACTCACCTTTTGCTTCCTACAAATTACCTCTCTATCTCTACAGAATTAACAAACCAAAATGGCTTCAAAACTCATCAAATCCTTTCTTCTTCTCCTCCTTTTGGTCTTTGTTGTTGGGTTGTTCTCTTCGGGAATGGTCGATCCACTCATGAACGTCAAGATTGCAAACAACTCTATCTTCAAGGTTTCTAGCTTCCAAATGAAGGCGAGAAAACTGGCACTTGACGTTGATTATGATGACCCTAGAGCCAATAACCGGCATGACCGCAAGAAGCCCGGCAATGGAAAGCCTTGACATAGCCTCACCTAGGCTTATGAGCTCAATAATAACAATATCTTTTAGCTTTACTTTAGTTCAACACGTCTAATGAAAATACTTTAAGTAATTAAGTTATGTTTAGAATAACAAGTTTCCGTCATTACTAATATATTTGTTATGGAACGAGAATGTATATTAGCTTTATCAAATGGGATAGACCTTTTGTAATAAAGCCTAAATCAATGGATACAGTCATCTATCTAATGCTTGTGGCCTCACTGGGGGGAAGTTTGAGCATTTTTTGAATGTGAAATATGAATGATGAGCCAGAGTTTATGTCAG

Coding sequence (CDS)

ATGGCTTCAAAACTCATCAAATCCTTTCTTCTTCTCCTCCTTTTGGTCTTTGTTGTTGGGTTGTTCTCTTCGGGAATGGTCGATCCACTCATGAACGTCAAGATTGCAAACAACTCTATCTTCAAGGTTTCTAGCTTCCAAATGAAGGCGAGAAAACTGGCACTTGACGTTGATTATGATGACCCTAGAGCCAATAACCGGCATGACCGCAAGAAGCCCGGCAATGGAAAGCCTTGA

Protein sequence

MASKLIKSFLLLLLLVFVVGLFSSGMVDPLMNVKIANNSIFKVSSFQMKARKLALDVDYDDPRANNRHDRKKPGNGKP
Homology
[Close]
BLAST of Cp4.1LG05g05950 vs. TrEMBL
Match: A0A0A0KJF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139330 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.0e-09
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1 

Query: 1  MASKLIKSFLLLLLLVFVVGLFSSGMV-DPLMNVKIANNSIFKVSSFQMKARKL-ALDV- 60
          M+ K++K FLL LL + +   FSSGMV +PL +  IA  SIFK+   QM  RKL  LD+ 
Sbjct: 1  MSLKVLKFFLLFLLSISIP--FSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQ 60

Query: 61 DYDDPRANNRHDRKKPGNGKP 79
          DYD+ +ANNRHD KKPGNGKP
Sbjct: 61 DYDETKANNRHDPKKPGNGKP 79

[Close]
BLAST of Cp4.1LG05g05950 vs. NCBI nr
Match: gi|700194678|gb|KGN49855.1| (hypothetical protein Csa_5G139330 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-09
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1 

Query: 1  MASKLIKSFLLLLLLVFVVGLFSSGMV-DPLMNVKIANNSIFKVSSFQMKARKL-ALDV- 60
          M+ K++K FLL LL + +   FSSGMV +PL +  IA  SIFK+   QM  RKL  LD+ 
Sbjct: 1  MSLKVLKFFLLFLLSISIP--FSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQ 60

Query: 61 DYDDPRANNRHDRKKPGNGKP 79
          DYD+ +ANNRHD KKPGNGKP
Sbjct: 61 DYDETKANNRHDPKKPGNGKP 79

The following BLAST results are available for this feature:
BLAST of Cp4.1LG05g05950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g05950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJF2_CUCSA4.0e-0956.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139330 PE=4 SV=1[more]
BLAST of Cp4.1LG05g05950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG05g05950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194678|gb|KGN49855.1|5.7e-0956.79hypothetical protein Csa_5G139330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g05950.1Cp4.1LG05g05950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g05950CmaCh02G011240Cucurbita maxima (Rimu)cmacpeB646
Cp4.1LG05g05950CmoCh02G011530Cucurbita moschata (Rifu)cmocpeB595
Cp4.1LG05g05950Csa5G139330Cucumber (Chinese Long) v2cpecuB730
Cp4.1LG05g05950ClCG01G000350Watermelon (Charleston Gray)cpewcgB635
Cp4.1LG05g05950CsaV3_5G000410Cucumber (Chinese Long) v3cpecucB0910
Cp4.1LG05g05950Bhi12G000568Wax gourdcpewgoB0916
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG05g05950Cucurbita pepo (Zucchini)cpecpeB057
Cp4.1LG05g05950Cucurbita pepo (Zucchini)cpecpeB227
Cp4.1LG05g05950Cucurbita pepo (Zucchini)cpecpeB245
Cp4.1LG05g05950Cucurbita pepo (Zucchini)cpecpeB479
Cp4.1LG05g05950Cucumber (Gy14) v1cgycpeB0011
Cp4.1LG05g05950Cucumber (Gy14) v1cgycpeB0576
Cp4.1LG05g05950Cucumber (Gy14) v1cgycpeB0685
Cp4.1LG05g05950Cucurbita maxima (Rimu)cmacpeB291
Cp4.1LG05g05950Cucurbita maxima (Rimu)cmacpeB330
Cp4.1LG05g05950Cucurbita maxima (Rimu)cmacpeB358
Cp4.1LG05g05950Cucurbita maxima (Rimu)cmacpeB453
Cp4.1LG05g05950Cucurbita moschata (Rifu)cmocpeB293
Cp4.1LG05g05950Cucurbita moschata (Rifu)cmocpeB322
Cp4.1LG05g05950Cucurbita moschata (Rifu)cmocpeB414
Cp4.1LG05g05950Wild cucumber (PI 183967)cpecpiB722
Cp4.1LG05g05950Wild cucumber (PI 183967)cpecpiB723
Cp4.1LG05g05950Wild cucumber (PI 183967)cpecpiB733
Cp4.1LG05g05950Cucumber (Chinese Long) v2cpecuB720
Cp4.1LG05g05950Cucumber (Chinese Long) v2cpecuB722
Cp4.1LG05g05950Bottle gourd (USVL1VR-Ls)cpelsiB579
Cp4.1LG05g05950Bottle gourd (USVL1VR-Ls)cpelsiB622
Cp4.1LG05g05950Bottle gourd (USVL1VR-Ls)cpelsiB626
Cp4.1LG05g05950Watermelon (Charleston Gray)cpewcgB677
Cp4.1LG05g05950Watermelon (Charleston Gray)cpewcgB678
Cp4.1LG05g05950Watermelon (97103) v1cpewmB704
Cp4.1LG05g05950Watermelon (97103) v1cpewmB705
Cp4.1LG05g05950Watermelon (97103) v1cpewmB708
Cp4.1LG05g05950Melon (DHL92) v3.5.1cpemeB651
Cp4.1LG05g05950Melon (DHL92) v3.5.1cpemeB698
Cp4.1LG05g05950Melon (DHL92) v3.5.1cpemeB701
Cp4.1LG05g05950Cucumber (Gy14) v2cgybcpeB428
Cp4.1LG05g05950Cucumber (Gy14) v2cgybcpeB430
Cp4.1LG05g05950Cucumber (Gy14) v2cgybcpeB686
Cp4.1LG05g05950Melon (DHL92) v3.6.1cpemedB779
Cp4.1LG05g05950Melon (DHL92) v3.6.1cpemedB832
Cp4.1LG05g05950Melon (DHL92) v3.6.1cpemedB837
Cp4.1LG05g05950Silver-seed gourdcarcpeB0718
Cp4.1LG05g05950Silver-seed gourdcarcpeB0765
Cp4.1LG05g05950Silver-seed gourdcarcpeB1377
Cp4.1LG05g05950Cucumber (Chinese Long) v3cpecucB0899
Cp4.1LG05g05950Wax gourdcpewgoB0928