CmaCh15G010230 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh15G010230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr15 : 6322072 .. 6322769 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTCCCATGCCCTCCTACCCCTACCTTTGCTTTTACCTCGATACAATACAATGTCTCCGAGCCTTAAATTCTTTCTCCTTCTTCCTCTCCTCTTCTCGATCTCCGTTTCTTTCTCTTCGGGTAACCTACTTCTGCCTTCTTGTTAAGTTTCGTCATTTTGTCGTTTTGATCGATGCTAATGTATATCTATTTCTTTGTGTTAGGCATGGTTGAATCGGGTGGAGACGTCAAGGTTGCAAATAAAGCGATCTACATGGTATTAAGTAATGTTTAAAAGATGCGAGATTTAAAGTGTTGTTATCATGTAAGTAAATAGTTTTTTTTTTTTTTTTTGAATGTGAAGCTTGGTGGGGTCGGAATGAATGGAAGGAAGCTTATGAGACTCGACGTAGAGGACTACGATGATACGAAAGCGAATAATAGGCATGATCCGAAGAAGCCCGGAATTGGAAAGCCTTAAAAGAGGGTCTTTCTTTGGTGCTTATGGTTTAAATAACAAAACATAAAAACATAAAAAGAGTGTGTTTTATGGTTGAGTTGTGTATTGAGAAAGTATATTATTAGCGTTCTAAAATGAGAAACTCTATGGATTCTATTTTGAATTTCAGTTCTAAAATGAGAAGCTCTATGGATTCTATTTTGAATTTCACTTCATTCTTATTGCGTCTTTGTTATTGGCTTTGTGGTTATGTTTGAG

mRNA sequence

CACTCCCATGCCCTCCTACCCCTACCTTTGCTTTTACCTCGATACAATACAATGTCTCCGAGCCTTAAATTCTTTCTCCTTCTTCCTCTCCTCTTCTCGATCTCCGTTTCTTTCTCTTCGGGCATGGTTGAATCGGGTGGAGACGTCAAGGTTGCAAATAAAGCGATCTACATGCTTGGTGGGGTCGGAATGAATGGAAGGAAGCTTATGAGACTCGACGTAGAGGACTACGATGATACGAAAGCGAATAATAGGCATGATCCGAAGAAGCCCGGAATTGGAAAGCCTTAAAAGAGGGTCTTTCTTTGGTGCTTATGGTTTAAATAACAAAACATAAAAACATAAAAAGAGTGTGTTTTATGGTTGAGTTGTGTATTGAGAAAGTATATTATTAGCGTTCTAAAATGAGAAACTCTATGGATTCTATTTTGAATTTCAGTTCTAAAATGAGAAGCTCTATGGATTCTATTTTGAATTTCACTTCATTCTTATTGCGTCTTTGTTATTGGCTTTGTGGTTATGTTTGAG

Coding sequence (CDS)

ATGTCTCCGAGCCTTAAATTCTTTCTCCTTCTTCCTCTCCTCTTCTCGATCTCCGTTTCTTTCTCTTCGGGCATGGTTGAATCGGGTGGAGACGTCAAGGTTGCAAATAAAGCGATCTACATGCTTGGTGGGGTCGGAATGAATGGAAGGAAGCTTATGAGACTCGACGTAGAGGACTACGATGATACGAAAGCGAATAATAGGCATGATCCGAAGAAGCCCGGAATTGGAAAGCCTTAA

Protein sequence

MSPSLKFFLLLPLLFSISVSFSSGMVESGGDVKVANKAIYMLGGVGMNGRKLMRLDVEDYDDTKANNRHDPKKPGIGKP
Homology
[Close]
BLAST of CmaCh15G010230 vs. TrEMBL
Match: A0A0A0KJF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139330 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1 

Query: 5  LKFFLLLPLLFSISVSFSSGMV-ESGGDVKVANKAIYMLGGVGMNGRKLMRLDVEDYDDT 64
          LKFFLL   L SIS+ FSSGMV E   D  +A K+I+ +GG+ MNGRKLM LD++DYD+T
Sbjct: 6  LKFFLLF--LLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDYDET 65

Query: 65 KANNRHDPKKPGIGKP 80
          KANNRHDPKKPG GKP
Sbjct: 66 KANNRHDPKKPGNGKP 79

[Close]
BLAST of CmaCh15G010230 vs. NCBI nr
Match: gi|700194678|gb|KGN49855.1| (hypothetical protein Csa_5G139330 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-16
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1 

Query: 5  LKFFLLLPLLFSISVSFSSGMV-ESGGDVKVANKAIYMLGGVGMNGRKLMRLDVEDYDDT 64
          LKFFLL   L SIS+ FSSGMV E   D  +A K+I+ +GG+ MNGRKLM LD++DYD+T
Sbjct: 6  LKFFLLF--LLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDYDET 65

Query: 65 KANNRHDPKKPGIGKP 80
          KANNRHDPKKPG GKP
Sbjct: 66 KANNRHDPKKPGNGKP 79

The following BLAST results are available for this feature:
BLAST of CmaCh15G010230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh15G010230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJF2_CUCSA1.5e-1667.11Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139330 PE=4 SV=1[more]
BLAST of CmaCh15G010230 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh15G010230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194678|gb|KGN49855.1|2.2e-1667.11hypothetical protein Csa_5G139330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G010230.1CmaCh15G010230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh15G010230Csa5G139330Cucumber (Chinese Long) v2cmacuB292
CmaCh15G010230ClCG01G000350Watermelon (Charleston Gray)cmawcgB255
CmaCh15G010230CmoCh15G010860Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G010230CsaV3_5G000410Cucumber (Chinese Long) v3cmacucB0342
CmaCh15G010230Cla97C01G000400Watermelon (97103) v2cmawmbB284
CmaCh15G010230Bhi12G000568Wax gourdcmawgoB0377
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G010230Cucumber (Chinese Long) v3cmacucB0334
CmaCh15G010230Watermelon (97103) v2cmawmbB307
CmaCh15G010230Wax gourdcmawgoB0389
CmaCh15G010230Cucurbita maxima (Rimu)cmacmaB242
CmaCh15G010230Cucurbita maxima (Rimu)cmacmaB300
CmaCh15G010230Cucurbita maxima (Rimu)cmacmaB306
CmaCh15G010230Cucurbita maxima (Rimu)cmacmaB313
CmaCh15G010230Cucumber (Gy14) v1cgycmaB0006
CmaCh15G010230Cucumber (Gy14) v1cgycmaB0599
CmaCh15G010230Cucurbita moschata (Rifu)cmacmoB289
CmaCh15G010230Cucurbita moschata (Rifu)cmacmoB292
CmaCh15G010230Cucurbita moschata (Rifu)cmacmoB299
CmaCh15G010230Wild cucumber (PI 183967)cmacpiB289
CmaCh15G010230Wild cucumber (PI 183967)cmacpiB290
CmaCh15G010230Wild cucumber (PI 183967)cmacpiB298
CmaCh15G010230Cucumber (Chinese Long) v2cmacuB285
CmaCh15G010230Cucumber (Chinese Long) v2cmacuB286
CmaCh15G010230Melon (DHL92) v3.5.1cmameB257
CmaCh15G010230Melon (DHL92) v3.5.1cmameB280
CmaCh15G010230Watermelon (Charleston Gray)cmawcgB266
CmaCh15G010230Watermelon (97103) v1cmawmB269
CmaCh15G010230Watermelon (97103) v1cmawmB272
CmaCh15G010230Cucurbita pepo (Zucchini)cmacpeB301
CmaCh15G010230Cucurbita pepo (Zucchini)cmacpeB305
CmaCh15G010230Cucurbita pepo (Zucchini)cmacpeB307
CmaCh15G010230Cucurbita pepo (Zucchini)cmacpeB330
CmaCh15G010230Bottle gourd (USVL1VR-Ls)cmalsiB262
CmaCh15G010230Bottle gourd (USVL1VR-Ls)cmalsiB289
CmaCh15G010230Cucumber (Gy14) v2cgybcmaB602
CmaCh15G010230Melon (DHL92) v3.6.1cmamedB292
CmaCh15G010230Melon (DHL92) v3.6.1cmamedB321
CmaCh15G010230Silver-seed gourdcarcmaB0379
CmaCh15G010230Silver-seed gourdcarcmaB0712
CmaCh15G010230Silver-seed gourdcarcmaB0751
CmaCh15G010230Silver-seed gourdcarcmaB1365