Csa5G139330.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G139330.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 3499901 .. 3500685 (-)
Sequence length	240

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAACCCTTTGCTTCTTACAAATTACCCCTCTCTTTCTCTCAAGCTTCAACACAACACAATGTCCCTAAAAGTACTTAAATTCTTTCTCCTCTTTCTCCTTTCAATCTCCATTCCTTTCTCTTCAGGTAACGTTTGTTTAGTTTTGTAATCTCGTCCCCTTAATGAATAATGCTAATATATATATATATATACTCTTTTCGTTTAGGAATGGTGGTTGAACCACTTCGAGACGACATGATTGCATATAAGTCAATTTTCAAGGTAACTATAGTGTTTTTTGAAAAGAGAAGTAAACAAAGAAAATTCAAGAGCAAAGTTATATCCAATAAATTTCAAGATATTTCTTACCTAGTTTCAAGAAACTAAATGATTTGTCGTTCTTTTTCTTCTTCAACGTGAAAAGATGGGAGGCATCCAAATGAATGGAAGGAAGCTTATGACACTCGACCTACAAGACTACGATGAAACAAAAGCAAATAATAGACACGATCCGAAGAAGCCAGGAAATGGAAAGCCTTGAGTTAGCCTCTCTTTGCCCTCGTGGTTTAAATAACGTGAAAGCACTTCCTATCTTACTTTACCAAGATAATGAAAGTGGTATGGCTGTGGATCGAGAATGTATAGTGGCCTTCTAAGATGAGAAACCCTTTAGATATAGCAAGACCTTTGATTCTTTTTTTATCAATTTCAATTTCACTTCCTTCTTATGCGTCTAATGCTCTAGTGGCTTTGAATAACAAGGCCGAGTGCGAGCTTTGTGGTTATGTTTGAGCAGTTATTTAG

mRNA sequence

ATGTCCCTAAAAGTACTTAAATTCTTTCTCCTCTTTCTCCTTTCAATCTCCATTCCTTTCTCTTCAGGAATGGTGGTTGAACCACTTCGAGACGACATGATTGCATATAAGTCAATTTTCAAGATGGGAGGCATCCAAATGAATGGAAGGAAGCTTATGACACTCGACCTACAAGACTACGATGAAACAAAAGCAAATAATAGACACGATCCGAAGAAGCCAGGAAATGGAAAGCCTTGA

Coding sequence (CDS)

ATGTCCCTAAAAGTACTTAAATTCTTTCTCCTCTTTCTCCTTTCAATCTCCATTCCTTTCTCTTCAGGAATGGTGGTTGAACCACTTCGAGACGACATGATTGCATATAAGTCAATTTTCAAGATGGGAGGCATCCAAATGAATGGAAGGAAGCTTATGACACTCGACCTACAAGACTACGATGAAACAAAAGCAAATAATAGACACGATCCGAAGAAGCCAGGAAATGGAAAGCCTTGA

Protein sequence

MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDYDETKANNRHDPKKPGNGKP*

Homology

[Close]

BLAST of Csa5G139330.1 vs. TrEMBL
Match: A0A0A0KJF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139330 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60
          MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY
Sbjct: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60

Query: 61 DETKANNRHDPKKPGNGKP 80
          DETKANNRHDPKKPGNGKP
Sbjct: 61 DETKANNRHDPKKPGNGKP 79

[Close]

BLAST of Csa5G139330.1 vs. TrEMBL
Match: B9I1Y0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02450g PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60
          ++L ++K FLL  L +  P SSG V E   + M +Y S+ K  GIQ+N RKL+ +D  DY
Sbjct: 3  LTLGMIKTFLLVSLLLLAPLSSGFV-EGFDEGMNSYPSLHK-DGIQVNTRKLLLVDELDY 62

Query: 61 DETKANNRHDPK-KPGNG 78
          D+  AN RHDP+ +PG G
Sbjct: 63 DDAGANRRHDPRGRPGVG 78

[Close]

BLAST of Csa5G139330.1 vs. NCBI nr
Match: gi|700194678|gb|KGN49855.1| (hypothetical protein Csa_5G139330 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 6.6e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60
          MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY
Sbjct: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60

Query: 61 DETKANNRHDPKKPGNGKP 80
          DETKANNRHDPKKPGNGKP
Sbjct: 61 DETKANNRHDPKKPGNGKP 79

[Close]

BLAST of Csa5G139330.1 vs. NCBI nr
Match: gi|645258059|ref|XP_008234706.1| (PREDICTED: uncharacterized protein LOC103333614 isoform X1 [Prunus mume])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 1  MSLKVLKFFLL--FLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLD-- 60
          M+L++  F LL  FL  + IP SSG+V E  ++D I    +    GI MN RKL  LD  
Sbjct: 1  MALRINVFLLLLFFLSLLLIPLSSGIVNEGFKEDGIDPIHLLHKDGIVMNSRKLWMLDAT 60

Query: 61 LQDYDETKANNRHDP-KKPGNGK 79
          +QDYD+T AN +HDP +KPGNG+
Sbjct: 61 MQDYDDTGANQKHDPRRKPGNGR 83

[Close]

BLAST of Csa5G139330.1 vs. NCBI nr
Match: gi|224120858|ref|XP_002318436.1| (hypothetical protein POPTR_0012s02450g [Populus trichocarpa])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-06
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDY 60
          ++L ++K FLL  L +  P SSG V E   + M +Y S+ K  GIQ+N RKL+ +D  DY
Sbjct: 3  LTLGMIKTFLLVSLLLLAPLSSGFV-EGFDEGMNSYPSLHK-DGIQVNTRKLLLVDELDY 62

Query: 61 DETKANNRHDPK-KPGNG 78
          D+  AN RHDP+ +PG G
Sbjct: 63 DDAGANRRHDPRGRPGVG 78

[Close]

BLAST of Csa5G139330.1 vs. NCBI nr
Match: gi|1021548241|ref|XP_016165589.1| (PREDICTED: uncharacterized protein LOC107608260 [Arachis ipaensis])

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 1  MSLKVLKFFLLFLLSISIPFSSGMVVEPLRDDMI-AYKSIFKMGGIQMNGRKLMTLD-LQ 60
          M L  LK FLL LL +SIPFSSG+ VE  RD+M   +  ++K GG++M  RKL + + + 
Sbjct: 1  MPLINLKPFLLLLLFLSIPFSSGL-VEGFRDNMYPTHHVLYKDGGMKMKLRKLFSHEFVL 60

Query: 61 DYDETKANNRHDPKKPGNG 78
          DYDE  AN +H  KKPG G
Sbjct: 61 DYDEAGANPKH-TKKPGKG 77

[Close]

BLAST of Csa5G139330.1 vs. NCBI nr
Match: gi|645258061|ref|XP_008234707.1| (PREDICTED: uncharacterized protein LOC103333614 isoform X2 [Prunus mume])

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-06
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 1  MSLKVLKFFLL--FLLSISIPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLD-- 60
          M+L++  F LL  FL  + IP SSG      ++D I    +    GI MN RKL  LD  
Sbjct: 1  MALRINVFLLLLFFLSLLLIPLSSGF-----KEDGIDPIHLLHKDGIVMNSRKLWMLDAT 60

Query: 61 LQDYDETKANNRHDP-KKPGNGK 79
          +QDYD+T AN +HDP +KPGNG+
Sbjct: 61 MQDYDDTGANQKHDPRRKPGNGR 78

The following BLAST results are available for this feature:

BLAST of Csa5G139330.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJF2_CUCSA	4.6e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G139330 PE=4 SV=1	[more]
B9I1Y0_POPTR	1.4e-06	46.15	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s02450g PE=4 SV=1	[more]

BLAST of Csa5G139330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194678\|gb\|KGN49855.1\|	6.6e-37	100.00	hypothetical protein Csa_5G139330 [Cucumis sativus]	[more]
gi\|645258059\|ref\|XP_008234706.1\|	1.7e-08	48.19	PREDICTED: uncharacterized protein LOC103333614 isoform X1 [Prunus mume]	[more]
gi\|224120858\|ref\|XP_002318436.1\|	2.1e-06	46.15	hypothetical protein POPTR_0012s02450g [Populus trichocarpa]	[more]
gi\|1021548241\|ref\|XP_016165589.1\|	2.7e-06	50.63	PREDICTED: uncharacterized protein LOC107608260 [Arachis ipaensis]	[more]
gi\|645258061\|ref\|XP_008234707.1\|	4.6e-06	45.78	PREDICTED: uncharacterized protein LOC103333614 isoform X2 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G139330	Csa5G139330	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa5G139330.1	Csa5G139330.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa5G139330.1.utr3p1	Csa5G139330.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa5G139330.1.cds3	Csa5G139330.1.cds3	CDS
Csa5G139330.1.cds2	Csa5G139330.1.cds2	CDS
Csa5G139330.1.cds1	Csa5G139330.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa5G139330.1.utr5p1	Csa5G139330.1.utr5p1	five_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34467	FAMILY NOT NAMED	coord: 1..77 score: 1.1
None	No IPR available	PANTHER	PTHR34467:SF1	SUBFAMILY NOT NAMED	coord: 1..77 score: 1.1