Csa4G151760 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G151760
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 8178595 .. 8179184 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGAACAAACCCTCAACAATTATAAAGCCTTGCTTAATTACCTTCGAATGAGTAATAATTCTGTTGCAACGGTAGTCCCTAATGATCGAGAAGATTGCAAACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAGCTCAGTTGTCTACTTTAGATGATGATGCACATGTTGCATTTTTCTTTATCTATGTCAAATATTATATGGGAATATCTAAAATAAAGGATGCTATATATATATGCTTAATCTATCTATGTCTTATTGTTCATTTTTCCACGTGTATTATAAATAAGGTG

mRNA sequence

ATGAGTAATAATTCTGTTGCAACGGTAGTCCCTAATGATCGAGAAGATTGCAAACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAG

Coding sequence (CDS)

ATGAGTAATAATTCTGTTGCAACGGTAGTCCCTAATGATCGAGAAGATTGCAAACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAG

Protein sequence

MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPPSIDYLDA*

Homology

[Close]

BLAST of Csa4G151760 vs. TrEMBL
Match: A0A0A0KW14_CUCSA (Acetate kinase OS=Cucumis sativus GN=Csa_4G151760 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60
           MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC
Sbjct: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60

Query: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120
           SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP
Sbjct: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120

Query: 121 SIDYLDA 128
           SIDYLDA
Sbjct: 121 SIDYLDA 127

[Close]

BLAST of Csa4G151760 vs. NCBI nr
Match: gi|700198662|gb|KGN53820.1| (Acetate kinase [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60
           MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC
Sbjct: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60

Query: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120
           SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP
Sbjct: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120

Query: 121 SIDYLDA 128
           SIDYLDA
Sbjct: 121 SIDYLDA 127

The following BLAST results are available for this feature:

BLAST of Csa4G151760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW14_CUCSA	1.4e-67	100.00	Acetate kinase OS=Cucumis sativus GN=Csa_4G151760 PE=4 SV=1	[more]

BLAST of Csa4G151760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198662\|gb\|KGN53820.1\|	2.0e-67	100.00	Acetate kinase [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU170075	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa4G151760.1	Csa4G151760.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU170075	CU170075	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 20..114 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa4G151760	ClCG04G000430	Watermelon (Charleston Gray)	cuwcgB305
Csa4G151760	Cla97C04G068800	Watermelon (97103) v2	cuwmbB302
Csa4G151760	Bhi03G002120	Wax gourd	cuwgoB392
Csa4G151760	CSPI04G10340	Wild cucumber (PI 183967)	cpicuB182
Csa4G151760	Cucsa.038000	Cucumber (Gy14) v1	cgycuB011
Csa4G151760	CsGy4G010010	Cucumber (Gy14) v2	cgybcuB165

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa4G151760	Melon (DHL92) v3.5.1	cumeB331