CsGy4G010010 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G010010
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Acetate kinase
Location	Chr4 : 8477046 .. 8477699 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCTACAAGTATATTGAAAACTATTCAGCTGTACTTTGAATCTACTACTTTAATTTTGAAAGGAAACATGGTTTGATTATAGCTGTAATTTTAATATTATTTTAAGAGAGGAATACGAACATCCAATCTAAACAAAGTATTAGGACTATATGAATTAAATTCCTCAATATCCACATTTACAGGAACCAATCCACAACTCTATAAATGTGCAACTACCATCAGAACAAACCCTCAACAATTATAAAGCCTTGCTTAATTACCTTCGAATGAGTAATAATTCTGTTGCAACGGTAGTCCCTAATGATCGAGAAGATTGCAAACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAG

mRNA sequence

ATGAGTCTACAAGAACCAATCCACAACTCTATAAATGTGCAACTACCATCAGAACAAACCCTCAACAATTATAAAGCCTTGCTTAATTACCTTCGAATGAGTAATAATTCTGTTGCAACGGTAGTCCCTAATGATCGAGAAGATTGCAAACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAG

Coding sequence (CDS)

ATGAGTCTACAAGAACCAATCCACAACTCTATAAATGTGCAACTACCATCAGAACAAACCCTCAACAATTATAAAGCCTTGCTTAATTACCTTCGAATGAGTAATAATTCTGTTGCAACGGTAGTCCCTAATGATCGAGAAGATTGCAAACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAG

Protein sequence

MSLQEPIHNSINVQLPSEQTLNNYKALLNYLRMSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPPSIDYLDA

Homology

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BLAST of CsGy4G010010 vs. NCBI nr
Match: KGN53820.1 (Acetate kinase [Cucumis sativus])

HSP 1 Score: 265.0 bits (676), Expect = 1.6e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 33  MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 92
           MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC
Sbjct: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60

Query: 93  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 152
           SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP
Sbjct: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120

Query: 153 SIDYLDA 160
           SIDYLDA
Sbjct: 121 SIDYLDA 127

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BLAST of CsGy4G010010 vs. NCBI nr
Match: XP_022132557.1 (cysteine proteinase inhibitor 6-like [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 52  ISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFI 111
           I N+  + Y+Q +G+FAV EHTHN+ G   +FI V      S  VGG KY L+++V E I
Sbjct: 28  IKNIN-DPYVQELGRFAVMEHTHNLCGASYEFIRVVSGE--SQVVGGKKYCLVIEVKETI 87

Query: 112 LAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAP 147
           + PS P   K + A +L      SWALL F    P
Sbjct: 88  IIPSMPSSIKFFKAIMLDKAWEKSWALLSFVPCEP 119

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BLAST of CsGy4G010010 vs. NCBI nr
Match: XP_022949716.1 (uncharacterized protein LOC111453027 [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-06
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 57  YNEYLQAMGKFAVEEHTHNMSGIERKFISV---GFAVVCSVPVGGDKYHLLVKVDEFILA 116
           +++Y+Q +G+FAV EH H + G+   FI V      +VC     G KY L+V+V E  + 
Sbjct: 29  HDQYVQELGRFAVMEHVHGLCGVGMTFICVVSGESKMVCE----GKKYSLVVEVKEVPVL 88

Query: 117 PSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYP 152
           P      KLY+A VL  +   SW LL F+    P + P
Sbjct: 89  PHACPAIKLYVADVLDKQCAKSWELLAFKPFCLPPMGP 122

[Close]

BLAST of CsGy4G010010 vs. NCBI nr
Match: XP_023543511.1 (cysteine proteinase inhibitor 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.8 bits (146), Expect = 4.7e-06
Identity = 35/98 (35.71%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 57  YNEYLQAMGKFAVEEHTHNMSGIERKFISV---GFAVVCSVPVGGDKYHLLVKVDEFILA 116
           ++ Y+Q +G+FAV EH H + G+   F+ V      +VC     G KY L+V+V E ++ 
Sbjct: 29  HDPYVQELGRFAVMEHVHGLCGVGMTFVRVVSGESKMVCE----GKKYSLVVEVKEVLVL 88

Query: 117 PSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYP 152
           P      KLY+A VL  +   SW LL F+    P + P
Sbjct: 89  PHQCPAIKLYVAEVLDKQCAKSWELLAFKPFCLPPMGP 122

[Close]

BLAST of CsGy4G010010 vs. TrEMBL
Match: tr|A0A0A0KW14|A0A0A0KW14_CUCSA (Acetate kinase OS=Cucumis sativus OX=3659 GN=Csa_4G151760 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.1e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 33  MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 92
           MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC
Sbjct: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60

Query: 93  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 152
           SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP
Sbjct: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120

Query: 153 SIDYLDA 160
           SIDYLDA
Sbjct: 121 SIDYLDA 127

The following BLAST results are available for this feature:

BLAST of CsGy4G010010 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53820.1	1.6e-67	100.00	Acetate kinase [Cucumis sativus]	[more]
XP_022132557.1	1.3e-08	42.11	cysteine proteinase inhibitor 6-like [Momordica charantia]	[more]
XP_022949716.1	4.7e-06	36.73	uncharacterized protein LOC111453027 [Cucurbita moschata]	[more]
XP_023543511.1	4.7e-06	35.71	cysteine proteinase inhibitor 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy4G010010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G010010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G010010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KW14\|A0A0A0KW14_CUCSA	1.1e-67	100.00	Acetate kinase OS=Cucumis sativus OX=3659 GN=Csa_4G151760 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G010010.1	CsGy4G010010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.450.10		coord: 47..148 e-value: 2.6E-6 score: 29.2
None	No IPR available	SUPERFAMILY	SSF54403	Cystatin/monellin	coord: 52..146

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G010010	Csa4G151760	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G010010	ClCG04G000430	Watermelon (Charleston Gray)	cgybwcgB286
CsGy4G010010	CSPI04G10340	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G010010	CsaV3_4G010470	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G010010	Cla97C04G068800	Watermelon (97103) v2	cgybwmbB286
CsGy4G010010	Bhi03G002120	Wax gourd	cgybwgoB376

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G010010	Bottle gourd (USVL1VR-Ls)	cgyblsiB245