CSPI04G10340 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G10340
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Acetate kinase
Location	Chr4 : 8432958 .. 8433574 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCACAACTCTATAAATGTGCAACTACCATCAGAACAAACCCTCAACAATTATAAAGCCTTGCTTAATTACCTTCGAATGAGTAATAATTCTGTTGCAACGGTAGTCCCTAATGATCGAGAAGATTGCAAACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAGCTCAGTTGTCTACTTTAGATGATGATGCACATGTTGCATTTTTCTTTATCTATGTCAAATATTATATGGGAATATCTAAAATAAAGGATGCTATATATATATGCTTAATCTATCTATGTCTTACTGTTCATTTTTCCACGTGTATTATAAATAAG

mRNA sequence

ATGAGTAATAATTCTGTTGCAACGGTAGTCCCTAATGATCGAGAAGATTGCAAACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAG

Coding sequence (CDS)

ATGAGTAATAATTCTGTTGCAACGGTAGTCCCTAATGATCGAGAAGATTGCAAACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAG

Homology

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BLAST of CSPI04G10340 vs. TrEMBL
Match: A0A0A0KW14_CUCSA (Acetate kinase OS=Cucumis sativus GN=Csa_4G151760 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.6e-68
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60
           MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC
Sbjct: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60

Query: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120
           SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP
Sbjct: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120

Query: 121 SIDYLDA 128
           SIDYLDA
Sbjct: 121 SIDYLDA 127

[Close]

BLAST of CSPI04G10340 vs. NCBI nr
Match: gi|700198662|gb|KGN53820.1| (Acetate kinase [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 5.2e-68
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


Query: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60
           MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC
Sbjct: 1   MSNNSVATVVPNDREDCKQISNVEYNEYLQAMGKFAVEEHTHNMSGIERKFISVGFAVVC 60

Query: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120
           SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP
Sbjct: 61  SVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPP 120

Query: 121 SIDYLDA 128
           SIDYLDA
Sbjct: 121 SIDYLDA 127

The following BLAST results are available for this feature:

BLAST of CSPI04G10340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G10340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW14_CUCSA	3.6e-68	100.00	Acetate kinase OS=Cucumis sativus GN=Csa_4G151760 PE=4 SV=1	[more]

BLAST of CSPI04G10340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI04G10340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198662\|gb\|KGN53820.1\|	5.2e-68	100.00	Acetate kinase [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G10340.1	CSPI04G10340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 20..114 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G10340	Csa4G151760	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G10340	ClCG04G000430	Watermelon (Charleston Gray)	cpiwcgB320
CSPI04G10340	CsaV3_4G010470	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G10340	Cla97C04G068800	Watermelon (97103) v2	cpiwmbB311
CSPI04G10340	Bhi03G002120	Wax gourd	cpiwgoB397
CSPI04G10340	Cucsa.038000	Cucumber (Gy14) v1	cgycpiB011
CSPI04G10340	CsGy4G010010	Cucumber (Gy14) v2	cgybcpiB168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G10340	Melon (DHL92) v3.5.1	cpimeB332