Cucsa.038000 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.038000
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Acetate kinase
Location	scaffold00493 : 13300 .. 13822 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAGCTCAGTTGTCTACTTTAGATGATGATGCACATGTTGCATTTTTCTTTATCTATGTCAAATATTATATGGGAATATCTAAAaTAAAGGATGCTATATATATATGCTTAATCTATCTATGTCTTATTGTTCATTTTTCCACGTGTATTATAAATAAGGTGCATCTATGAAATATTTTTGTTCAAGTTTCCTAA

mRNA sequence

AACAGATTTCAAATGTTGAGTATAATGAGTATTTGCAAGCAATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAGCTCAGTTGTCTACTTTAGATGATGATGCACATGTTGCATTTTTCTTTATCTATGTCAAATATTATATGGGAATATCTAAAATAAAGGATGCTATATATATATGCTTAATCTATCTATGTCTTATTGTTCATTTTTCCACGTGTATTATAAATAAGGTGCATCTATGAAATATTTTTGTTCAAGTTTCCTAA

Coding sequence (CDS)

ATGGGAAAGTTTGCAGTAGAGGAGCATACACATAACATGAGCGGAATAGAAAGAAAGTTCATCAGTGTGGGGTTTGCGGTGGTTTGTTCAGTGCCTGTGGGAGGAGATAAATATCACCTCCTAGTGAAGGTAGATGAATTTATATTGGCTCCATCATTCCCAAAGTATGAAAAGCTATATATGGCTACTGTGCTTCATAATAAAGTTAATCACTCGTGGGCACTCTTACGATTTGAAAATGTGGCACCTCCTACTGTTTACCCCCCGAGCATTGATTATCTTGATGCCTAG

Protein sequence

MGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFPKYEKLYMATVLHNKVNHSWALLRFENVAPPTVYPPSIDYLDA*

Homology

[Close]

BLAST of Cucsa.038000 vs. TrEMBL
Match: A0A0A0KW14_CUCSA (Acetate kinase OS=Cucumis sativus GN=Csa_4G151760 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 4.9e-49
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1   MGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFPKYEKLY 60
           MGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFPKYEKLY
Sbjct: 32  MGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFPKYEKLY 91

Query: 61  MATVLHNKVNHSWALLRFENVAPPTVYPPSIDYLDA 97
           MATVLHNKVNHSWALLRFENVAPPTVYPPSIDYLDA
Sbjct: 92  MATVLHNKVNHSWALLRFENVAPPTVYPPSIDYLDA 127

[Close]

BLAST of Cucsa.038000 vs. NCBI nr
Match: gi|700198662|gb|KGN53820.1| (Acetate kinase [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 7.0e-49
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1   MGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFPKYEKLY 60
           MGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFPKYEKLY
Sbjct: 32  MGKFAVEEHTHNMSGIERKFISVGFAVVCSVPVGGDKYHLLVKVDEFILAPSFPKYEKLY 91

Query: 61  MATVLHNKVNHSWALLRFENVAPPTVYPPSIDYLDA 97
           MATVLHNKVNHSWALLRFENVAPPTVYPPSIDYLDA
Sbjct: 92  MATVLHNKVNHSWALLRFENVAPPTVYPPSIDYLDA 127

The following BLAST results are available for this feature:

BLAST of Cucsa.038000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW14_CUCSA	4.9e-49	100.00	Acetate kinase OS=Cucumis sativus GN=Csa_4G151760 PE=4 SV=1	[more]

BLAST of Cucsa.038000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198662\|gb\|KGN53820.1\|	7.0e-49	100.00	Acetate kinase [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.038000.1	Cucsa.038000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	SSF54403	Cystatin/monellin	coord: 1..83 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.038000	Csa4G151760	Cucumber (Chinese Long) v2	cgycuB011
Cucsa.038000	CSPI04G10340	Wild cucumber (PI 183967)	cgycpiB011
Cucsa.038000	CsaV3_4G010470	Cucumber (Chinese Long) v3	cgycucB014
Cucsa.038000	Bhi03G002120	Wax gourd	cgywgoB013

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None